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Volumn 64, Issue 3, 2007, Pages 285-298

Evolution of Pleopsidium (Lichenized Ascomycota) S943 group I introns and the phylogeography of an intron-encoded putative homing endonuclease

Author keywords

Ancestral state reconstruction; Group I intron mobility; Homing endonuclease gene (HEG); Lichen forming fungus Pleopsidium; Phylogeography; Ribosomal RNA

Indexed keywords

AMINO ACID; ENDONUCLEASE; NUCLEAR RNA;

EID: 33847669230     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-005-0179-z     Document Type: Article
Times cited : (11)

References (86)
  • 1
    • 0030750528 scopus 로고    scopus 로고
    • Profile of the DNA recognition site of the archaeal homing endonuclease I-DmoI
    • Aagaard C, Awayez MJ, Garrett RA (1997) Profile of the DNA recognition site of the archaeal homing endonuclease I-DmoI. Nucleic Acids Res 25:1523-1530
    • (1997) Nucleic Acids Res , vol.25 , pp. 1523-1530
    • Aagaard, C.1    Awayez, M.J.2    Garrett, R.A.3
  • 2
    • 3042848954 scopus 로고    scopus 로고
    • Crystal structure of a self-splicing group I intron with both exons
    • Adams PL, Stahley MR, Kosek AB, Wang J, Strobel SA (2004) Crystal structure of a self-splicing group I intron with both exons. Nature 430:45-50
    • (2004) Nature , vol.430 , pp. 45-50
    • Adams, P.L.1    Stahley, M.R.2    Kosek, A.B.3    Wang, J.4    Strobel, S.A.5
  • 3
    • 0032540751 scopus 로고    scopus 로고
    • I-PpoI and I-CreI homing site sequence degeneracy determined by random mutagenesis and sequential in vitro enrichment
    • Argast GM, Stephens KM, Edmond MJ, Monnat RJ Jr (1998) I-PpoI and I-CreI homing site sequence degeneracy determined by random mutagenesis and sequential in vitro enrichment. J Mol Biol 280:345-353
    • (1998) J Mol Biol , vol.280 , pp. 345-353
    • Argast, G.M.1    Stephens, K.M.2    Edmond, M.J.3    Monnat Jr, R.J.4
  • 4
    • 0029616336 scopus 로고
    • Mechanisms of intron mobility
    • Belfort M, Perlman P (1995) Mechanisms of intron mobility. J Biol Chem 270:30237-30240
    • (1995) J Biol Chem , vol.270 , pp. 30237-30240
    • Belfort, M.1    Perlman, P.2
  • 5
    • 0030812487 scopus 로고    scopus 로고
    • Homing endonucleases: Keeping the house in order
    • Belfort M, Roberts RJ (1997) Homing endonucleases: keeping the house in order. Nucleic Acids Res 25:3379-3388
    • (1997) Nucleic Acids Res , vol.25 , pp. 3379-3388
    • Belfort, M.1    Roberts, R.J.2
  • 6
    • 0031855248 scopus 로고    scopus 로고
    • The origin and evolution of protist group I introns
    • Bhattacharya D (1998) The origin and evolution of protist group I introns. Protist 149:113-122
    • (1998) Protist , vol.149 , pp. 113-122
    • Bhattacharya, D.1
  • 7
    • 0028061443 scopus 로고
    • Group I introns are inherited through common ancestry in the nuclear-encoded rRNA of Zygnematales (Charophyceae)
    • Bhattacharya D, Surek B, Rusing M, Damberger S, Melkonian M (1994) Group I introns are inherited through common ancestry in the nuclear-encoded rRNA of Zygnematales (Charophyceae). Proc Natl Acad Sci USA 91:9916-9920
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 9916-9920
    • Bhattacharya, D.1    Surek, B.2    Rusing, M.3    Damberger, S.4    Melkonian, M.5
  • 8
    • 0029792519 scopus 로고    scopus 로고
    • Nuclear encoded rDNA group I introns: Origin and phylogenetic relationships of insertion site lineages in green algae
    • Bhattacharya D, Friedl T, Damberger S (1996) Nuclear encoded rDNA group I introns: origin and phylogenetic relationships of insertion site lineages in green algae. Mol Biol Evol 13:978-989
    • (1996) Mol Biol Evol , vol.13 , pp. 978-989
    • Bhattacharya, D.1    Friedl, T.2    Damberger, S.3
  • 9
    • 0036017384 scopus 로고    scopus 로고
    • Vertical evolution and intragenic spread of lichen-fungal group I introns
    • Bhattacharya D, Friedl T, Helms G (2002) Vertical evolution and intragenic spread of lichen-fungal group I introns. J Mol Evol 55:74-84
    • (2002) J Mol Evol , vol.55 , pp. 74-84
    • Bhattacharya, D.1    Friedl, T.2    Helms, G.3
  • 10
    • 0027207339 scopus 로고
    • The td intron endonuclease I-TevI makes extensive sequence-tolerant contacts across the minor groove of its DNA target
    • Bryk M, Quirk SM, Mueller JE, Loizos N, Lawrence C, Belfort M (1993) The td intron endonuclease I-TevI makes extensive sequence-tolerant contacts across the minor groove of its DNA target. EMBO J 12:4040-4041
    • (1993) EMBO J , vol.12 , pp. 4040-4041
    • Bryk, M.1    Quirk, S.M.2    Mueller, J.E.3    Loizos, N.4    Lawrence, C.5    Belfort, M.6
  • 11
    • 0028943142 scopus 로고
    • Selection of a remote cleavage site by I-TevI, the td intron-encoded endonuclease
    • Bryk M, Belisle M, Mueller JE, Belfort M (1995) Selection of a remote cleavage site by I-TevI, the td intron-encoded endonuclease. J Mol Biol 247:197-210
    • (1995) J Mol Biol , vol.247 , pp. 197-210
    • Bryk, M.1    Belisle, M.2    Mueller, J.E.3    Belfort, M.4
  • 13
    • 8644255915 scopus 로고    scopus 로고
    • Homing endonuclease genes: The rise and fall and rise again of a selfish element
    • Burt A, Koufopanou V (2004) Homing endonuclease genes: the rise and fall and rise again of a selfish element. Curr Opin Genet Dev 14:609-615
    • (2004) Curr Opin Genet Dev , vol.14 , pp. 609-615
    • Burt, A.1    Koufopanou, V.2
  • 14
    • 33846454863 scopus 로고    scopus 로고
    • Group I introns and their maturases: Uninvited, but welcome guests
    • Belfort M, Stoddard BL, Wood DW, Derbyshire V eds, Springer, Berlin, Heidelberg, pp
    • Caprara MG, Waring RB (2005) Group I introns and their maturases: uninvited, but welcome guests. In: Belfort M, Stoddard BL, Wood DW, Derbyshire V (eds) Homing endonucleases and inteins. Springer, Berlin, Heidelberg, pp 103-119
    • (2005) Homing endonucleases and inteins , pp. 103-119
    • Caprara, M.G.1    Waring, R.B.2
  • 16
    • 0021895324 scopus 로고
    • Self-splicing RNA: Implications for evolution
    • Cech TR (1985) Self-splicing RNA: implications for evolution. Int Rev Cytol 93:3-22
    • (1985) Int Rev Cytol , vol.93 , pp. 3-22
    • Cech, T.R.1
  • 17
    • 0035883706 scopus 로고    scopus 로고
    • Homing endonucleases: Structure and functional insight into the catalysts of intron/intein mobility
    • Chevalier BS, Stoddard BL (2001) Homing endonucleases: structure and functional insight into the catalysts of intron/intein mobility. Nucleic Acids Res 29:3757-3774
    • (2001) Nucleic Acids Res , vol.29 , pp. 3757-3774
    • Chevalier, B.S.1    Stoddard, B.L.2
  • 18
    • 0032564449 scopus 로고    scopus 로고
    • Explosive invasion of plant mitochondria by a group I intron
    • Cho Y, Qiu Y-L, Kuhlman P, Palmer JD (1998) Explosive invasion of plant mitochondria by a group I intron. Proc Natl Acad Sci USA 95:14238-14243
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14238-14243
    • Cho, Y.1    Qiu, Y.-L.2    Kuhlman, P.3    Palmer, J.D.4
  • 19
    • 0034720157 scopus 로고    scopus 로고
    • Retrotransposition of a bacterial group II intron
    • Cousineau B, Lawrence S, Smith D, Belfort M (2000) Retrotransposition of a bacterial group II intron. Nature 404:1018-1021
    • (2000) Nature , vol.404 , pp. 1018-1021
    • Cousineau, B.1    Lawrence, S.2    Smith, D.3    Belfort, M.4
  • 21
    • 0027999532 scopus 로고
    • Purification and characterization of two forms of I-DmoI, a thermophilic site-specific endonuclease encoded by an archaeal intron
    • Dalgaard JZ, Garrett RA, Belfort M (1994) Purification and characterization of two forms of I-DmoI, a thermophilic site-specific endonuclease encoded by an archaeal intron. J Biol Chem 269:28885-28892
    • (1994) J Biol Chem , vol.269 , pp. 28885-28892
    • Dalgaard, J.Z.1    Garrett, R.A.2    Belfort, M.3
  • 22
    • 9444278151 scopus 로고
    • Numerous group I introns with a variable distribution in the ribosomal DNA of a lichen fungus
    • DePriest PT, Been MD (1992) Numerous group I introns with a variable distribution in the ribosomal DNA of a lichen fungus. J Mol Biol 288:67-71
    • (1992) J Mol Biol , vol.288 , pp. 67-71
    • DePriest, P.T.1    Been, M.D.2
  • 23
    • 0024446859 scopus 로고
    • Group I introns as mobile genetic elements: Facts and mechanistic speculations - a review
    • Dujon B (1989) Group I introns as mobile genetic elements: facts and mechanistic speculations - a review. Gene 82:91-114
    • (1989) Gene , vol.82 , pp. 91-114
    • Dujon, B.1
  • 25
    • 0033806414 scopus 로고    scopus 로고
    • Barriers to intron promiscuity in bacteria
    • Edgell DR, Belfort M, Shub DA (2000) Barriers to intron promiscuity in bacteria. J Bacteriol 182:5281-5289
    • (2000) J Bacteriol , vol.182 , pp. 5281-5289
    • Edgell, D.R.1    Belfort, M.2    Shub, D.A.3
  • 26
    • 0034071813 scopus 로고    scopus 로고
    • The distribution of group I introns in lichen algae suggests that lichenization facilitates intron lateral transfer
    • Friedl T, Besendahl A, Pfeiffer P, Bhattacharya D (2000) The distribution of group I introns in lichen algae suggests that lichenization facilitates intron lateral transfer. Mol Phylogenet Evol 14:342-352
    • (2000) Mol Phylogenet Evol , vol.14 , pp. 342-352
    • Friedl, T.1    Besendahl, A.2    Pfeiffer, P.3    Bhattacharya, D.4
  • 27
    • 33644782864 scopus 로고    scopus 로고
    • His-Cys box homing endonucleases
    • Belfort M, Stoddard BL, Wood DW, Derbyshire V eds, Springer, Berlin, Heidelberg, pp
    • Galburt EA, Jurica MS (2005) His-Cys box homing endonucleases. In: Belfort M, Stoddard BL, Wood DW, Derbyshire V (eds) Homing endonucleases and inteins. Springer, Berlin, Heidelberg, pp 85-102
    • (2005) Homing endonucleases and inteins , pp. 85-102
    • Galburt, E.A.1    Jurica, M.S.2
  • 28
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts
    • Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol Ecol 2:113-118
    • (1993) Mol Ecol , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 29
    • 0001485434 scopus 로고
    • Polymerase chain reaction (PCR) primers for amplifying and sequencing nuclear 18S rDNA from lichenized fungi
    • Gargas A, Taylor JW (1992) Polymerase chain reaction (PCR) primers for amplifying and sequencing nuclear 18S rDNA from lichenized fungi. Mycologia 84:589-592
    • (1992) Mycologia , vol.84 , pp. 589-592
    • Gargas, A.1    Taylor, J.W.2
  • 30
    • 0028928940 scopus 로고
    • Positions of multiple insertions in SSU rDNA of lichen-forming fungi
    • Gargas A, DePriest PT, Taylor JW (1995) Positions of multiple insertions in SSU rDNA of lichen-forming fungi. Mol Biol Evol 12:208-218
    • (1995) Mol Biol Evol , vol.12 , pp. 208-218
    • Gargas, A.1    DePriest, P.T.2    Taylor, J.W.3
  • 31
    • 14144250580 scopus 로고    scopus 로고
    • Origin, divergence, and phylogeny of epichloë endophytes of native Argentine grasses
    • Gentile A, Rossi MS, Cabral D, Craven KD, Schardl CL (2005) Origin, divergence, and phylogeny of epichloë endophytes of native Argentine grasses. Mol Phylogenet Evol 35:196-208
    • (2005) Mol Phylogenet Evol , vol.35 , pp. 196-208
    • Gentile, A.1    Rossi, M.S.2    Cabral, D.3    Craven, K.D.4    Schardl, C.L.5
  • 33
    • 0033598755 scopus 로고    scopus 로고
    • Recurrent invasion and extinction of a selfish gene
    • Goddard MR, Burt A (1999) Recurrent invasion and extinction of a selfish gene. Proc Natl Acad Sci. USA 96:13880-13885
    • (1999) Proc Natl Acad Sci. USA , vol.96 , pp. 13880-13885
    • Goddard, M.R.1    Burt, A.2
  • 34
    • 0032998403 scopus 로고    scopus 로고
    • Grube M, Gutmann B, Arup U, de los Rios A, Mattsson J-E, Wedin M (1999) An exceptional group-I intron-like insertion in the SSU rDNA of lichen mycobionts. Curr Genet 35:536-541
    • Grube M, Gutmann B, Arup U, de los Rios A, Mattsson J-E, Wedin M (1999) An exceptional group-I intron-like insertion in the SSU rDNA of lichen mycobionts. Curr Genet 35:536-541
  • 35
    • 0000708299 scopus 로고
    • Acarospora und Pleopsidium - zwei lichenisierte Ascomycetengattungen (Lecanorales) mit zahlreichen Konvergenzen
    • Hafellner J (1993) Acarospora und Pleopsidium - zwei lichenisierte Ascomycetengattungen (Lecanorales) mit zahlreichen Konvergenzen. Nova Hedwigia 56:281-305
    • (1993) Nova Hedwigia , vol.56 , pp. 281-305
    • Hafellner, J.1
  • 36
    • 1242352078 scopus 로고    scopus 로고
    • The evolution of homing endonuclease genes and group I introns in nuclear rDNA
    • Haugen P, Reeb V, Lutzoni F, Bhattacharya D (2004) The evolution of homing endonuclease genes and group I introns in nuclear rDNA. Mol Biol Evol 21:129-140
    • (2004) Mol Biol Evol , vol.21 , pp. 129-140
    • Haugen, P.1    Reeb, V.2    Lutzoni, F.3    Bhattacharya, D.4
  • 39
    • 0029836453 scopus 로고    scopus 로고
    • Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi
    • Hibbett DS (1996) Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi. Mol Biol Evol 13:903-917
    • (1996) Mol Biol Evol , vol.13 , pp. 903-917
    • Hibbett, D.S.1
  • 40
    • 0032960288 scopus 로고    scopus 로고
    • Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic fungi
    • Holst-Jensen A, Vaage M, Schumacher T, Johansen S (1999) Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic fungi. Mol Biol Evol 16:114-126
    • (1999) Mol Biol Evol , vol.16 , pp. 114-126
    • Holst-Jensen, A.1    Vaage, M.2    Schumacher, T.3    Johansen, S.4
  • 41
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogenetic trees
    • available at
    • Huelsenbeck JP, Ronquist F (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755 (available at: http://www.morphbank.ebc.uu.se/mrbayes3/info.php)
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 42
    • 33847615388 scopus 로고    scopus 로고
    • Jackson VK (2004) StochChar.Lasrdisc: a Mesquite module for performing ancestral state reconstructions as in the program LASRDisc. Version 1.00; available at
    • Jackson VK (2004) StochChar.Lasrdisc: a Mesquite module for performing ancestral state reconstructions as in the program LASRDisc. Version 1.00; available at: http://www.ceb.csit.fsu.edu/lasrdisc/
  • 43
    • 33847666190 scopus 로고    scopus 로고
    • Jahns HM (1972) Individualitat und Variabilitat in der Flechtengattung Cladina Nyl. Herzogia 2:277-290
    • Jahns HM (1972) Individualitat und Variabilitat in der Flechtengattung Cladina Nyl. Herzogia 2:277-290
  • 44
    • 0026713654 scopus 로고
    • Structure and evolution of myxomycete nuclear group I introns: A model for horizontal transfer by intron homing
    • Johansen S, Johansen T, Haugli F (1992) Structure and evolution of myxomycete nuclear group I introns: a model for horizontal transfer by intron homing. Curr Genet 22:297-304
    • (1992) Curr Genet , vol.22 , pp. 297-304
    • Johansen, S.1    Johansen, T.2    Haugli, F.3
  • 45
    • 0033567272 scopus 로고    scopus 로고
    • Homing endonucleases: Structure, function, and evolution
    • Jurica MS, Stoddard BL (1999) Homing endonucleases: structure, function, and evolution. Cell Mol Life Sci 55:1304-1326
    • (1999) Cell Mol Life Sci , vol.55 , pp. 1304-1326
    • Jurica, M.S.1    Stoddard, B.L.2
  • 46
    • 0036184347 scopus 로고    scopus 로고
    • Adaptation for horizontal transfer in a homing endonuclease
    • Koufopanou V, Goddard MR, Burt A (2002) Adaptation for horizontal transfer in a homing endonuclease. Mol Biol Evol 19:239-246
    • (2002) Mol Biol Evol , vol.19 , pp. 239-246
    • Koufopanou, V.1    Goddard, M.R.2    Burt, A.3
  • 47
    • 0036440550 scopus 로고    scopus 로고
    • Characterization of the homing endonucleases
    • Kowalski JC, Derbyshire V (2002) Characterization of the homing endonucleases. Methods 28:365-373
    • (2002) Methods , vol.28 , pp. 365-373
    • Kowalski, J.C.1    Derbyshire, V.2
  • 48
  • 49
    • 0031684421 scopus 로고    scopus 로고
    • I-PpoI, the endonuclease encoded by the group I intron PpLSU3, is expressed from an RNA polymerase I transcript
    • Lin J, Vogt VM (1998) I-PpoI, the endonuclease encoded by the group I intron PpLSU3, is expressed from an RNA polymerase I transcript. Mol Cell Biol 18:5809-5817
    • (1998) Mol Cell Biol , vol.18 , pp. 5809-5817
    • Lin, J.1    Vogt, V.M.2
  • 50
    • 0032750944 scopus 로고    scopus 로고
    • Phylogenetic relationships among Ascomycetes: Evidence from an RNA polymerase II subunit
    • Liu YJ, Whelen S, Hall BD (1999) Phylogenetic relationships among Ascomycetes: evidence from an RNA polymerase II subunit. Mol Biol Evol 16:1799-1808
    • (1999) Mol Biol Evol , vol.16 , pp. 1799-1808
    • Liu, Y.J.1    Whelen, S.2    Hall, B.D.3
  • 51
    • 0027973379 scopus 로고
    • Evolution of mobile group I introns: Recognition of intron sequences by an intron-encoded endonuclease
    • Loizos N, Tillier E, Belfort M (1994) Evolution of mobile group I introns: recognition of intron sequences by an intron-encoded endonuclease. Proc Natl Acad Sci USA 91:11983-11987
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11983-11987
    • Loizos, N.1    Tillier, E.2    Belfort, M.3
  • 52
    • 0034351388 scopus 로고    scopus 로고
    • Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology
    • available at
    • Lutzoni F, Wagner P, Reeb V, Zoller S (2000) Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. Syst Biol 49:628-651 (available at: http://www.lutzonilab. net/pages/download.shtml)
    • (2000) Syst Biol , vol.49 , pp. 628-651
    • Lutzoni, F.1    Wagner, P.2    Reeb, V.3    Zoller, S.4
  • 53
    • 0035927638 scopus 로고    scopus 로고
    • Major fungal lineages are derived from lichen symbiotic ancestors
    • Lutzoni F, Pagel M, Reeb V (2001) Major fungal lineages are derived from lichen symbiotic ancestors. Nature 411:937-940
    • (2001) Nature , vol.411 , pp. 937-940
    • Lutzoni, F.1    Pagel, M.2    Reeb, V.3
  • 54
    • 33847681602 scopus 로고    scopus 로고
    • Maddison WP, Maddison DR (2003) MacClade: analysis of phylogeny and character evolution. Version 4.06. Sinauer Associates, Sunderland, MA
    • Maddison WP, Maddison DR (2003) MacClade: analysis of phylogeny and character evolution. Version 4.06. Sinauer Associates, Sunderland, MA
  • 55
    • 33847657721 scopus 로고    scopus 로고
    • Maddison WP, Maddison DR (2004a) Mesquite: a modular system for evolutionary analysis. Version 1.05; available at
    • Maddison WP, Maddison DR (2004a) Mesquite: a modular system for evolutionary analysis. Version 1.05; available at: http://www.mesquiteproject. org
  • 56
    • 33847663097 scopus 로고    scopus 로고
    • Maddison WP, Maddison DR (2004b) StochChar: A package of Mesquite modules for stochastic models of character evolution. Version 1.05; available at
    • Maddison WP, Maddison DR (2004b) StochChar: A package of Mesquite modules for stochastic models of character evolution. Version 1.05; available at http://www.mesquiteproject.org
  • 58
    • 17844367344 scopus 로고    scopus 로고
    • Hybridization as an invasion of the genome
    • Mallet J (2005) Hybridization as an invasion of the genome. Trends Eco Evol 20:229-237
    • (2005) Trends Eco Evol , vol.20 , pp. 229-237
    • Mallet, J.1
  • 59
    • 0242320928 scopus 로고    scopus 로고
    • Structural features and evolutionary considerations of group IB introns in SSU rDNA of the lichen fungus Teloschistes
    • Martín MP, Coucheron DH, Johansen S (2003) Structural features and evolutionary considerations of group IB introns in SSU rDNA of the lichen fungus Teloschistes. Fungal Genet Biol 40:252-260
    • (2003) Fungal Genet Biol , vol.40 , pp. 252-260
    • Martín, M.P.1    Coucheron, D.H.2    Johansen, S.3
  • 61
    • 0025678737 scopus 로고
    • Modeling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • Michel F, Westhof E (1990) Modeling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol 216:585-610
    • (1990) J Mol Biol , vol.216 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 62
    • 0036326019 scopus 로고    scopus 로고
    • The evolutionary origins of three new Neotyphodium endophyte species from grasses indigenous to the Southern Hemisphere
    • Moon CD, Miles CO, Jarlfors U, Schardl CL (2002) The evolutionary origins of three new Neotyphodium endophyte species from grasses indigenous to the Southern Hemisphere. Mycologia 94:694-711
    • (2002) Mycologia , vol.94 , pp. 694-711
    • Moon, C.D.1    Miles, C.O.2    Jarlfors, U.3    Schardl, C.L.4
  • 63
    • 0034882882 scopus 로고    scopus 로고
    • A structural and phylogenetic analysis of the group IC1 introns in the order Bangiales (Rhodophyta)
    • Müller KM, Cannone JJ, Gutell RR, Sheath RG (2001) A structural and phylogenetic analysis of the group IC1 introns in the order Bangiales (Rhodophyta). Mol Biol Evol 18:1654-1667
    • (2001) Mol Biol Evol , vol.18 , pp. 1654-1667
    • Müller, K.M.1    Cannone, J.J.2    Gutell, R.R.3    Sheath, R.G.4
  • 65
  • 66
    • 0030447619 scopus 로고    scopus 로고
    • Pleopsidium discurrens, comb. nova, newly discovered in southern Tibet
    • Obermayer W (1996) Pleopsidium discurrens, comb. nova, newly discovered in southern Tibet. Ann Bot Fennici 33:231-236
    • (1996) Ann Bot Fennici , vol.33 , pp. 231-236
    • Obermayer, W.1
  • 67
    • 4644295715 scopus 로고    scopus 로고
    • Group I intron-like insertions in SSU rDNA of Cladonia gracilis and C. rangiferina
    • Piercey-Normore MD, Hausner G, Gibb EA (2004) Group I intron-like insertions in SSU rDNA of Cladonia gracilis and C. rangiferina. Lichenologist 36:365-380
    • (2004) Lichenologist , vol.36 , pp. 365-380
    • Piercey-Normore, M.D.1    Hausner, G.2    Gibb, E.A.3
  • 68
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 69
    • 3843090640 scopus 로고    scopus 로고
    • Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory
    • Reeb V, Lutzoni F, Roux C (2004) Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory. Mol Phylogenet Evol 32:1036-1060
    • (2004) Mol Phylogenet Evol , vol.32 , pp. 1036-1060
    • Reeb, V.1    Lutzoni, F.2    Roux, C.3
  • 70
    • 0037389511 scopus 로고    scopus 로고
    • Roberts RJ, Belfort M, Bestor T, Bhagwat AS, Bickle TA, Bitinaite J, Blumenthal RM, Degtyarev SK, Dryden DTF, Dybvig K, Firman K, Gromova ES, Gumport RI, Halford SE, Hattman S, Heitman J, Hornby DP, Janulaitis A, Jeltsch A, Josephsen J, Kiss A, Klaenhammer TR., Kobayashi I, Kong H, Krüger DH, Lacks S, Marinus MG, Miyahara M, Morgan RD, Murray NE, Nagaraja V, Piekarowicz A, Pingoud A, Raleigh E, Rao DN, Reich N, Repin VE, Selker EU, Shaw P-C, Stein DC, Stoddard BL, Szybalski W, Trautner TA, Van Etten JL, Vitor JMB, Wilson GG, Xu S-Y (2003) A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res 31:1805-1812
    • Roberts RJ, Belfort M, Bestor T, Bhagwat AS, Bickle TA, Bitinaite J, Blumenthal RM, Degtyarev SK, Dryden DTF, Dybvig K, Firman K, Gromova ES, Gumport RI, Halford SE, Hattman S, Heitman J, Hornby DP, Janulaitis A, Jeltsch A, Josephsen J, Kiss A, Klaenhammer TR., Kobayashi I, Kong H, Krüger DH, Lacks S, Marinus MG, Miyahara M, Morgan RD, Murray NE, Nagaraja V, Piekarowicz A, Pingoud A, Raleigh E, Rao DN, Reich N, Repin VE, Selker EU, Shaw P-C, Stein DC, Stoddard BL, Szybalski W, Trautner TA, Van Etten JL, Vitor JMB, Wilson GG, Xu S-Y (2003) A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res 31:1805-1812
  • 71
    • 0029330798 scopus 로고
    • Reverse splicing of the Tetrahymena IVS: Evidence for multiple reaction sites in the 23S rRNA
    • Roman J, Woodson SA (1995) Reverse splicing of the Tetrahymena IVS: evidence for multiple reaction sites in the 23S rRNA. RNA 1:478-490
    • (1995) RNA , vol.1 , pp. 478-490
    • Roman, J.1    Woodson, S.A.2
  • 72
    • 0032478206 scopus 로고    scopus 로고
    • Integration of the Tetrahymena group I intron into bacterial rRNA by reverse splicing in vivo
    • Roman J, Woodson SA (1998) Integration of the Tetrahymena group I intron into bacterial rRNA by reverse splicing in vivo. Proc Natl Acad Sci USA 95:2134-2139
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 2134-2139
    • Roman, J.1    Woodson, S.A.2
  • 73
    • 0032899118 scopus 로고    scopus 로고
    • Sequence specificity of in vivo reverse splicing of the Tetrahymena group I intron
    • Roman J, Rubin MN, Woodson SA (1999) Sequence specificity of in vivo reverse splicing of the Tetrahymena group I intron. RNA 5:1-13
    • (1999) RNA , vol.5 , pp. 1-13
    • Roman, J.1    Rubin, M.N.2    Woodson, S.A.3
  • 74
    • 2542455477 scopus 로고    scopus 로고
    • Distribution, sequence homology, and homing of group I introns among T-even-like bacteriophages
    • Sandegren L, Sjöberg B-M (2004) Distribution, sequence homology, and homing of group I introns among T-even-like bacteriophages. J Biol Chem 279:22218-22227
    • (2004) J Biol Chem , vol.279 , pp. 22218-22227
    • Sandegren, L.1    Sjöberg, B.-M.2
  • 75
    • 0242540589 scopus 로고    scopus 로고
    • Interspecific hybridization in plant-associated fungi and oomycetes: A review
    • Schardel CL, Craven KD (2003) Interspecific hybridization in plant-associated fungi and oomycetes: a review. Mol Ecol 12:2861-2873
    • (2003) Mol Ecol , vol.12 , pp. 2861-2873
    • Schardel, C.L.1    Craven, K.D.2
  • 76
    • 0022209462 scopus 로고
    • Artificial cultures of lichens in the natural environment
    • Schuster G, Ott S, Jahns HM (1985) Artificial cultures of lichens in the natural environment. Lichenologist 17:247-253
    • (1985) Lichenologist , vol.17 , pp. 247-253
    • Schuster, G.1    Ott, S.2    Jahns, H.M.3
  • 77
    • 19944381549 scopus 로고    scopus 로고
    • Divergent histories of rDNA group I introns in the lichen family Physciaceae
    • Simon D, Moline J, Helms G, Friedl T, Bhattacharya D (2005) Divergent histories of rDNA group I introns in the lichen family Physciaceae. J Mol Evol 60:434-446
    • (2005) J Mol Evol , vol.60 , pp. 434-446
    • Simon, D.1    Moline, J.2    Helms, G.3    Friedl, T.4    Bhattacharya, D.5
  • 78
    • 0031938454 scopus 로고    scopus 로고
    • Small insertions at a shared position in the SSU rDNA of Lecanorales (lichen-forming Ascomycetes)
    • Stenroos S, DePriest PT (1998) Small insertions at a shared position in the SSU rDNA of Lecanorales (lichen-forming Ascomycetes). Curr Genet 33:124-130
    • (1998) Curr Genet , vol.33 , pp. 124-130
    • Stenroos, S.1    DePriest, P.T.2
  • 79
    • 33847633188 scopus 로고    scopus 로고
    • Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony *and other methods, Version 4. Sinauer Associates, Sunderland, MA
    • Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland, MA
  • 80
    • 33846045586 scopus 로고    scopus 로고
    • American Arctic lichens
    • University of Wisconsin Press, Madison, WI
    • Thomson JW (1997) American Arctic lichens. 2. The microlichens University of Wisconsin Press, Madison, WI
    • (1997) The microlichens , vol.2
    • Thomson, J.W.1
  • 81
    • 0028807582 scopus 로고
    • Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric CoxI gene of peperomia
    • Vaughn JC, Mason MT, Sper-Whitis GL, Kuhlman P, Palmer JD (1995) Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric CoxI gene of peperomia. J Mol Evol 41:563-572
    • (1995) J Mol Evol , vol.41 , pp. 563-572
    • Vaughn, J.C.1    Mason, M.T.2    Sper-Whitis, G.L.3    Kuhlman, P.4    Palmer, J.D.5
  • 82
    • 0242579617 scopus 로고    scopus 로고
    • Nuclear large subunit rDNA group I intron distribution in a population of Beauveria bassiana strains: Phylogenetic implications
    • Wang C, Li Z, Typas MA, Butt TM (2003) Nuclear large subunit rDNA group I intron distribution in a population of Beauveria bassiana strains: phylogenetic implications. Mycol Res 107:1189-1200
    • (2003) Mycol Res , vol.107 , pp. 1189-1200
    • Wang, C.1    Li, Z.2    Typas, M.A.3    Butt, T.M.4
  • 83
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis MA, Gelfand DH, Sninsky JJ, White TJ eds, Academic Press, San Diego, CA, pp
    • White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, San Diego, CA, pp 315-322
    • (1990) PCR protocols: A guide to methods and applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 85
    • 0032484598 scopus 로고    scopus 로고
    • Degenerate DNA recognition by I-Ppo endonuclease
    • Wittmayer PK, McKenzie JL, Raines RT (1998) Degenerate DNA recognition by I-Ppo endonuclease. Gene 206:11-21
    • (1998) Gene , vol.206 , pp. 11-21
    • Wittmayer, P.K.1    McKenzie, J.L.2    Raines, R.T.3
  • 86
    • 0024975570 scopus 로고
    • Reverse self-splicing of the Tetrahymena group I intron: Implication for the directionality of splicing and for intron transposition
    • Woodson SA, Cech TR (1989) Reverse self-splicing of the Tetrahymena group I intron: implication for the directionality of splicing and for intron transposition. Cell 57:335-345
    • (1989) Cell , vol.57 , pp. 335-345
    • Woodson, S.A.1    Cech, T.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.