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Volumn 388, Issue 3, 2007, Pages 253-264

Evolutionary selection pressure and family relationships among connexin genes

Author keywords

Gap junctions; Gene family; Genome databases; Species specific genes

Indexed keywords

GAP JUNCTION PROTEIN;

EID: 33847626398     PISSN: 14316730     EISSN: 14374315     Source Type: Journal    
DOI: 10.1515/BC.2007.028     Document Type: Article
Times cited : (49)

References (60)
  • 2
    • 0038204408 scopus 로고    scopus 로고
    • Phylogeny for the faint of heart: A tutorial
    • Baldauf, S.L. (2003). Phylogeny for the faint of heart: a tutorial. Trends Genet. 19, 345-351.
    • (2003) Trends Genet , vol.19 , pp. 345-351
    • Baldauf, S.L.1
  • 3
    • 1342291195 scopus 로고    scopus 로고
    • Electrical coupling and neuronal synchronization in the mammalian brain
    • Bennett, M.V., and Zukin, R.S. (2004). Electrical coupling and neuronal synchronization in the mammalian brain. Neuron 41, 495-511.
    • (2004) Neuron , vol.41 , pp. 495-511
    • Bennett, M.V.1    Zukin, R.S.2
  • 6
    • 0346991738 scopus 로고    scopus 로고
    • The problem of counting sites in the estimation of the synonymous and nonsynonymous substitution rates: Implications for the correlation between the synonymous substitution rate and codon usage bias
    • Bierne, N., and Eyre-Walker, A. (2003). The problem of counting sites in the estimation of the synonymous and nonsynonymous substitution rates: implications for the correlation between the synonymous substitution rate and codon usage bias. Genetics 165, 1587-1597.
    • (2003) Genetics , vol.165 , pp. 1587-1597
    • Bierne, N.1    Eyre-Walker, A.2
  • 8
    • 0035031279 scopus 로고    scopus 로고
    • Methylation matters
    • Costello, J.F., and Plass, C. (2001). Methylation matters. J. Med. Genet. 38, 285-303.
    • (2001) J. Med. Genet , vol.38 , pp. 285-303
    • Costello, J.F.1    Plass, C.2
  • 9
    • 0036872373 scopus 로고    scopus 로고
    • Connexins, gap junctional intercellular communication and kinases
    • Cruciani, V., and Mikalsen, S.-O. (2002). Connexins, gap junctional intercellular communication and kinases. Biol. Cell 94, 433-443.
    • (2002) Biol. Cell , vol.94 , pp. 433-443
    • Cruciani, V.1    Mikalsen, S.-O.2
  • 10
    • 25144478470 scopus 로고    scopus 로고
    • The connexin gene family in mammals
    • Cruciani, V., and Mikalsen, S.-O. (2005). The connexin gene family in mammals. Biol. Chem. 386, 325-332.
    • (2005) Biol. Chem , vol.386 , pp. 325-332
    • Cruciani, V.1    Mikalsen, S.-O.2
  • 11
    • 33745313131 scopus 로고    scopus 로고
    • The vertebrate connexin family
    • Cruciani, V., and Mikalsen, S.O. (2006). The vertebrate connexin family. Cell Mol. Life Sci. 63, 1125-1140.
    • (2006) Cell Mol. Life Sci , vol.63 , pp. 1125-1140
    • Cruciani, V.1    Mikalsen, S.O.2
  • 12
    • 27544470247 scopus 로고    scopus 로고
    • The detection of hamster connexins: A comparison of expression profiles with wild-type mouse and the cancer-prone Min mouse
    • Cruciani, V., Heintz, K.-M., Husøy, T., Hovig, E., Warren, D.J., and Mikalsen, S.-O. (2004). The detection of hamster connexins: a comparison of expression profiles with wild-type mouse and the cancer-prone Min mouse. Cell Commun. Adhes. 11, 155-171.
    • (2004) Cell Commun. Adhes , vol.11 , pp. 155-171
    • Cruciani, V.1    Heintz, K.-M.2    Husøy, T.3    Hovig, E.4    Warren, D.J.5    Mikalsen, S.-O.6
  • 13
    • 0033620627 scopus 로고    scopus 로고
    • Drosophila has several genes for gap junction proteins
    • Curtin, K.D., Zhang, Z., and Wyman, R.J. (1999). Drosophila has several genes for gap junction proteins. Gene 232, 191-201.
    • (1999) Gene , vol.232 , pp. 191-201
    • Curtin, K.D.1    Zhang, Z.2    Wyman, R.J.3
  • 14
    • 33644832569 scopus 로고    scopus 로고
    • Xenopus connexins: How frogs bridge the gap
    • de Boer, T.P. and Van der Heyden, M.A.G. (2005). Xenopus connexins: how frogs bridge the gap. Differentiation 73, 330-340.
    • (2005) Differentiation , vol.73 , pp. 330-340
    • de Boer, T.P.1    Van der Heyden, M.A.G.2
  • 15
    • 33644536713 scopus 로고    scopus 로고
    • Tunicates and not cephalochordates are the closest living relatives of vertebrates
    • Delsuc, F., Brinkmann, H., Chourrout, D., and Philippe, H. (2006). Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 439, 965-968.
    • (2006) Nature , vol.439 , pp. 965-968
    • Delsuc, F.1    Brinkmann, H.2    Chourrout, D.3    Philippe, H.4
  • 16
    • 7444237566 scopus 로고    scopus 로고
    • The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils?
    • Douzery, E.J., Snell, E.A., Bapteste, E., Delsuc, F., and Philippe, H. (2004). The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils? Proc. Natl. Acad. Sci. USA 101, 15386-15391.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 15386-15391
    • Douzery, E.J.1    Snell, E.A.2    Bapteste, E.3    Delsuc, F.4    Philippe, H.5
  • 17
    • 0033977618 scopus 로고    scopus 로고
    • Determinants of substitution rates in mammalian genes: Expression pattern affects selection intensity but not mutation rate
    • Duret, L., and Mouchiroud, D. (2000). Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate. Mol. Biol. Evol. 17, 68-74.
    • (2000) Mol. Biol. Evol , vol.17 , pp. 68-74
    • Duret, L.1    Mouchiroud, D.2
  • 18
    • 30944460666 scopus 로고    scopus 로고
    • Phylogenetic analysis of three complete gap junction gene families reveals lineage-specific duplications and highly supported gene classes
    • Eastman, S.D., Chen, T.H., Falk, M.M., Mendelson, T.C., and Iovine, M.K. (2006). Phylogenetic analysis of three complete gap junction gene families reveals lineage-specific duplications and highly supported gene classes. Genomics 87, 265-274.
    • (2006) Genomics , vol.87 , pp. 265-274
    • Eastman, S.D.1    Chen, T.H.2    Falk, M.M.3    Mendelson, T.C.4    Iovine, M.K.5
  • 19
    • 0014800108 scopus 로고
    • Distinguishing homologous from analogous proteins
    • Fitch, W.M. (1970). Distinguishing homologous from analogous proteins. Syst. Zool. 19, 99-113.
    • (1970) Syst. Zool , vol.19 , pp. 99-113
    • Fitch, W.M.1
  • 20
    • 0034178257 scopus 로고    scopus 로고
    • Homology. A personal view on some of the problems
    • Fitch, W.M. (2000). Homology. A personal view on some of the problems. Trends Genet. 16, 227-231.
    • (2000) Trends Genet , vol.16 , pp. 227-231
    • Fitch, W.M.1
  • 21
    • 0023269077 scopus 로고
    • Selective disruption of gap junctional communication interferes with a patterning process in Hydra
    • Fraser, S.E., Green, C.R., Bode, H.R., and Gilula, N.B. (1987). Selective disruption of gap junctional communication interferes with a patterning process in Hydra. Science 237, 49-55.
    • (1987) Science , vol.237 , pp. 49-55
    • Fraser, S.E.1    Green, C.R.2    Bode, H.R.3    Gilula, N.B.4
  • 22
    • 0033863396 scopus 로고    scopus 로고
    • The X chromosome and the rate of deleterious mutations in humans
    • Giannelli, F. and Green, P.M. (2000). The X chromosome and the rate of deleterious mutations in humans. Am. J. Hum. Genet. 67, 515-517.
    • (2000) Am. J. Hum. Genet , vol.67 , pp. 515-517
    • Giannelli, F.1    Green, P.M.2
  • 23
    • 0025342561 scopus 로고
    • Differential regulation of the levels of three gap junction mRNAs in Xenopus embryos
    • Gimlich, R.L., Kumar, N.M., and Gilula, N.B. (1990). Differential regulation of the levels of three gap junction mRNAs in Xenopus embryos. J. Cell Biol. 110, 597-605.
    • (1990) J. Cell Biol , vol.110 , pp. 597-605
    • Gimlich, R.L.1    Kumar, N.M.2    Gilula, N.B.3
  • 24
    • 0036613509 scopus 로고    scopus 로고
    • Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution
    • Gu, X., Wang, Y., and Gu, J. (2002). Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution. Nat. Genet. 31, 205-209.
    • (2002) Nat. Genet , vol.31 , pp. 205-209
    • Gu, X.1    Wang, Y.2    Gu, J.3
  • 25
    • 0000084234 scopus 로고
    • A framework for the quantitative study of evolutionary trees
    • Hendy, M.D., and Penny, D. (1989). A framework for the quantitative study of evolutionary trees. Syst. Zool. 38, 297-309.
    • (1989) Syst. Zool , vol.38 , pp. 297-309
    • Hendy, M.D.1    Penny, D.2
  • 27
    • 0042386241 scopus 로고    scopus 로고
    • Sequence and phylogenetic analyses of 4 TMS junctional proteins of animals: Connexins, innexins, claudins and occludins
    • Hua, V.B., Chang, A.B., Tchieu, J.H., Kumar, N.M., Nielsen, P.A., and Saier, M.H., Jr. (2003). Sequence and phylogenetic analyses of 4 TMS junctional proteins of animals: connexins, innexins, claudins and occludins. J. Membr. Biol. 194, 59-76.
    • (2003) J. Membr. Biol , vol.194 , pp. 59-76
    • Hua, V.B.1    Chang, A.B.2    Tchieu, J.H.3    Kumar, N.M.4    Nielsen, P.A.5    Saier Jr., M.H.6
  • 28
    • 0036720020 scopus 로고    scopus 로고
    • s ratio: Diagnosing the form of sequence evolution
    • s ratio: diagnosing the form of sequence evolution. Trends Genet. 18, 486-487.
    • (2002) Trends Genet , vol.18 , pp. 486-487
    • Hurst, L.D.1
  • 29
    • 6044224907 scopus 로고    scopus 로고
    • Migratory neural crest-like cells form body pigmentation in a urochordate embryo
    • Jeffery, W.R., Strickler, A.G., and Yamamoto, Y. (2004). Migratory neural crest-like cells form body pigmentation in a urochordate embryo. Nature 431, 696-699.
    • (2004) Nature , vol.431 , pp. 696-699
    • Jeffery, W.R.1    Strickler, A.G.2    Yamamoto, Y.3
  • 30
    • 0000210747 scopus 로고
    • Intercellular diffusion
    • Kanno, L., and Loewenstein, W.R. (1964). Intercellular diffusion. Science 143, 959-960.
    • (1964) Science , vol.143 , pp. 959-960
    • Kanno, L.1    Loewenstein, W.R.2
  • 31
    • 0026813055 scopus 로고
    • Molecular biology and genetics of gap junction channels
    • Kumar, N.M., and Gilula, N.B. (1992). Molecular biology and genetics of gap junction channels. Semin. Cell Biol. 3, 3-16.
    • (1992) Semin. Cell Biol , vol.3 , pp. 3-16
    • Kumar, N.M.1    Gilula, N.B.2
  • 32
    • 0032580152 scopus 로고    scopus 로고
    • A molecular timescale for vertebrate evolution
    • Kumar, S., and Hedges, S.B. (1998). A molecular timescale for vertebrate evolution. Nature 392, 917-920.
    • (1998) Nature , vol.392 , pp. 917-920
    • Kumar, S.1    Hedges, S.B.2
  • 33
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar, S., Tamura, K., and Nei, M. (2004). MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5, 150-163.
    • (2004) Brief. Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 35
    • 0018382741 scopus 로고
    • Junctional intercellular communication and the control of growth
    • Loewenstein, W.R. (1979). Junctional intercellular communication and the control of growth. Biochim. Biophys. Acta 560, 1-65.
    • (1979) Biochim. Biophys. Acta , vol.560 , pp. 1-65
    • Loewenstein, W.R.1
  • 36
    • 0036873006 scopus 로고    scopus 로고
    • Connexins and cancer
    • Mesnil, M. (2002). Connexins and cancer. Biol. Cell 94, 493-500.
    • (2002) Biol. Cell , vol.94 , pp. 493-500
    • Mesnil, M.1
  • 37
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Mouse Genome Sequencing Consortium
    • Mouse Genome Sequencing Consortium (2002). Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520-562.
    • (2002) Nature , vol.420 , pp. 520-562
  • 39
    • 0035253804 scopus 로고    scopus 로고
    • Transmembrane α-helices in the gap junction membrane channel: Systematic search of packing models based on the pair potential function
    • Nunn, R.S., Macke, T.J., Olson, A.J., and Yeager, M. (2001). Transmembrane α-helices in the gap junction membrane channel: systematic search of packing models based on the pair potential function. Microsc. Res. Tech. 52, 344-351.
    • (2001) Microsc. Res. Tech , vol.52 , pp. 344-351
    • Nunn, R.S.1    Macke, T.J.2    Olson, A.J.3    Yeager, M.4
  • 40
    • 0030022029 scopus 로고    scopus 로고
    • Connexin 35: A gap-junctional protein expressed preferentially in the skate retina
    • O'Brien, J., Al-Ubaidi, M.R., and Ripps, H. (1996). Connexin 35: a gap-junctional protein expressed preferentially in the skate retina. Mol. Biol. Cell 7, 233-243.
    • (1996) Mol. Biol. Cell , vol.7 , pp. 233-243
    • O'Brien, J.1    Al-Ubaidi, M.R.2    Ripps, H.3
  • 42
    • 0038817812 scopus 로고    scopus 로고
    • New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes
    • Panopoulou, G., Hennig, S., Groth, D., Krause, A., Poustka, A.J., Herwig, R., Vingron, M., and Lehrach, H. (2003). New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes. Genome Res. 13, 1056-1066.
    • (2003) Genome Res , vol.13 , pp. 1056-1066
    • Panopoulou, G.1    Hennig, S.2    Groth, D.3    Krause, A.4    Poustka, A.J.5    Herwig, R.6    Vingron, M.7    Lehrach, H.8
  • 43
    • 0035012765 scopus 로고    scopus 로고
    • Innexins get into the gap
    • Phelan, P., and Starich, T.A. (2001). Innexins get into the gap. BioEssays 23, 388-396.
    • (2001) BioEssays , vol.23 , pp. 388-396
    • Phelan, P.1    Starich, T.A.2
  • 44
    • 0025034641 scopus 로고
    • Modulation of gap junction transcript and protein expression during pregnancy in the rat
    • Risek, B., Guthrie, S., Kumar, N., and Gilula, N.B. (1990). Modulation of gap junction transcript and protein expression during pregnancy in the rat. J. Cell Biol. 110, 269-282.
    • (1990) J. Cell Biol , vol.110 , pp. 269-282
    • Risek, B.1    Guthrie, S.2    Kumar, N.3    Gilula, N.B.4
  • 45
    • 17344390158 scopus 로고    scopus 로고
    • Plasma membrane channels formed by connexins: Their regulation and functions
    • Sáez, J.C., Berthoud, V.M., Brañes, M.C., Martínez, A.D., and Beyer, E.C. (2003). Plasma membrane channels formed by connexins: their regulation and functions. Physiol. Rev. 83, 1359-1400.
    • (2003) Physiol. Rev , vol.83 , pp. 1359-1400
    • Sáez, J.C.1    Berthoud, V.M.2    Brañes, M.C.3    Martínez, A.D.4    Beyer, E.C.5
  • 46
    • 0038303289 scopus 로고    scopus 로고
    • A genome-wide survey of developmentally relevant genes in Ciona intestinalis. X. Genes for cell junctions and extracellular matrix
    • Sasakura, Y., Shoguchi, E., Takatori, N., Wada, S., Meinertzhagen, I.A., Satou, Y., and Satoh, N. (2003). A genome-wide survey of developmentally relevant genes in Ciona intestinalis. X. Genes for cell junctions and extracellular matrix. Dev. Genes Evol. 213, 303-313.
    • (2003) Dev. Genes Evol , vol.213 , pp. 303-313
    • Sasakura, Y.1    Shoguchi, E.2    Takatori, N.3    Wada, S.4    Meinertzhagen, I.A.5    Satou, Y.6    Satoh, N.7
  • 47
    • 0028985519 scopus 로고
    • Interior-branch and bootstrap tests of phylogenetic trees
    • Sitnikova, T., Rzhetsky, A., and Nei, M. (1995). Interior-branch and bootstrap tests of phylogenetic trees. Mol. Biol. Evol. 12, 319-333.
    • (1995) Mol. Biol. Evol , vol.12 , pp. 319-333
    • Sitnikova, T.1    Rzhetsky, A.2    Nei, M.3
  • 48
    • 0347126503 scopus 로고    scopus 로고
    • An update on connexin genes and their nomenclature in mouse and man
    • Söhl, G., and Willecke, K. (2003). An update on connexin genes and their nomenclature in mouse and man. Cell Commun. Adhes. 10, 173-180.
    • (2003) Cell Commun. Adhes , vol.10 , pp. 173-180
    • Söhl, G.1    Willecke, K.2
  • 49
    • 0014127962 scopus 로고
    • Transfer of growth inhibition between normal and virus-transformed cells: Autoradiographic studies using marked cells
    • Stoker, M.G.P. (1967). Transfer of growth inhibition between normal and virus-transformed cells: autoradiographic studies using marked cells. J. Cell Sci. 2, 293-304.
    • (1967) J. Cell Sci , vol.2 , pp. 293-304
    • Stoker, M.G.P.1
  • 50
    • 0025299347 scopus 로고
    • The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model
    • Sved, J., and Bird, A. (1990). The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model. Proc. Natl. Acad. Sci. USA 87, 4692-4696.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4692-4696
    • Sved, J.1    Bird, A.2
  • 51
    • 0036790028 scopus 로고    scopus 로고
    • Evolutionary distance estimation under heterogeneous substitution pattern among lineages
    • Tamura, K., and Kumar, S. (2002). Evolutionary distance estimation under heterogeneous substitution pattern among lineages. Mol. Biol. Evol. 19, 1727-1736.
    • (2002) Mol. Biol. Evol , vol.19 , pp. 1727-1736
    • Tamura, K.1    Kumar, S.2
  • 52
    • 0037351989 scopus 로고    scopus 로고
    • Genome duplication, a trait shared by 22000 species of ray-finned fish
    • Taylor, J.S., Braasch, I., Frickey, T., Meyer, A., and Van de Peer, Y. (2003). Genome duplication, a trait shared by 22000 species of ray-finned fish. Genome Res. 13, 382-390.
    • (2003) Genome Res , vol.13 , pp. 382-390
    • Taylor, J.S.1    Braasch, I.2    Frickey, T.3    Meyer, A.4    Van de Peer, Y.5
  • 53
    • 0037075039 scopus 로고    scopus 로고
    • Secret life of genes
    • Theissen, G. (2002). Secret life of genes. Nature 415, 741.
    • (2002) Nature , vol.415 , pp. 741
    • Theissen, G.1
  • 54
    • 1242274629 scopus 로고    scopus 로고
    • Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates
    • Vandepoele, K., De Vos, W., Taylor, J.S., Meyer, A., and Van de Peer, Y. (2004). Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc. Natl. Acad. Sci. USA 101, 1638-1643.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 1638-1643
    • Vandepoele, K.1    De Vos, W.2    Taylor, J.S.3    Meyer, A.4    Van de Peer, Y.5
  • 55
    • 8444245596 scopus 로고    scopus 로고
    • Connexins and cell signaling in development and disease
    • Wei, C.-J., Xu, X., and Lo, C.W. (2004). Connexins and cell signaling in development and disease. Annu. Rev. Cell Dev. Biol. 20, 811-838.
    • (2004) Annu. Rev. Cell Dev. Biol , vol.20 , pp. 811-838
    • Wei, C.-J.1    Xu, X.2    Lo, C.W.3
  • 56
    • 7544239811 scopus 로고    scopus 로고
    • Cloning and functional expression of invertebrate connexins from Halocynthia pyriformis
    • White, T.W., Wang, H., Mui, R., Litteral, J., and Brink, P.R. (2004). Cloning and functional expression of invertebrate connexins from Halocynthia pyriformis. FEBS Lett. 577, 42-48.
    • (2004) FEBS Lett , vol.577 , pp. 42-48
    • White, T.W.1    Wang, H.2    Mui, R.3    Litteral, J.4    Brink, P.R.5
  • 58
    • 0028129661 scopus 로고
    • Connexin messenger ribonucleic acids in the ovary of Atlantic croaker: Molecular cloning and characterization, hormonal control, and correlation with appearance of oocyte maturational competence
    • Yoshizaki, G., Patiño, R., and Thomas, P. (1994). Connexin messenger ribonucleic acids in the ovary of Atlantic croaker: molecular cloning and characterization, hormonal control, and correlation with appearance of oocyte maturational competence. Biol. Reprod. 51, 493-503.
    • (1994) Biol. Reprod , vol.51 , pp. 493-503
    • Yoshizaki, G.1    Patiño, R.2    Thomas, P.3
  • 59
    • 0037500141 scopus 로고    scopus 로고
    • Evolution by gene duplication: An update
    • Zhang, J. (2003). Evolution by gene duplication: an update. Trends Ecol. Evol. 18, 292-298.
    • (2003) Trends Ecol. Evol , vol.18 , pp. 292-298
    • Zhang, J.1
  • 60
    • 1542286776 scopus 로고    scopus 로고
    • Mammalian housekeeping genes evolve more slowly than tissue-specific genes
    • Zhang, L., and Li, W.H. (2004). Mammalian housekeeping genes evolve more slowly than tissue-specific genes. Mol. Biol. Evol. 21, 236-239.
    • (2004) Mol. Biol. Evol , vol.21 , pp. 236-239
    • Zhang, L.1    Li, W.H.2


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