Comprehensive peptidome analysis of mouse livers by size exclusion chromatography prefractionation and nanoLC-MS/MS identification

Journal of Proteome Research

Volumn 6, Issue 2, 2007, Pages 801-808

  Hu, Lianghai ^a   Li, Xin ^a   Jiang, Xinning ^a   Zhou, Houjiang ^a   Jiang, Xiaogang ^a   Kong, Liang ^a   Ye, Mingliang ^a   Zou, Hanfa ^a  

^a DALIAN INSTITUTE OF CHEMICAL PHYSICS   (China)

Author keywords

Mass spectrometry; Mouse liver; Peptidomics; Proteomics; Size exclusion chromatography

Indexed keywords

ANIMAL TISSUE; ARTICLE; FEMALE; FRACTIONATION; GEL PERMEATION CHROMATOGRAPHY; LIQUID CHROMATOGRAPHY; LIVER; MOLECULAR WEIGHT; MOUSE; NONHUMAN; PEPTIDOMICS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; TANDEM MASS SPECTROMETRY;

AMINO ACID SEQUENCE; ANIMALS; FEMALE; FREEZE DRYING; LIVER; MASS SPECTROMETRY; MICE; MICE, INBRED C57BL; MOLECULAR SEQUENCE DATA; NANOSTRUCTURES; PEPTIDE FRAGMENTS; PEPTIDES; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 33847397401     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr060469e     Document Type: Article

References (38)

1. Washburn, M. P.; Wolters, D.; Yates, J. R. Nat. Biotechnol. 2001, 19, 242-247.
2. Aebersold, R.; Mann, M. Nature 2003, 422, 198-207.
3. Ludwig, J. A.; Weinstein, J. N. Nat. Rev. Cancer 2005, 5, 845-856.
4. Novak, K. Nat. Rev. Cancer 2006, 6, 92-92.
5. Soloviev, M.; Finch, P. Proteomics 2006, 6, 744-747.
6. Adermann, K.; John, H.; Standker, L.; Forssmann, W. G. Curr. Opin. Biotechnol. 2004, 15, 599-606.
7. Geho, D. H.; Liotta, L. A.; Petricoin, E. F.; Zhao, W. D.; Araujo, R. P. Curr. Opin. Chem. Biol. 2006, 10, 50-55.
8. Schulz-Knappe, P.; Zucht, H. D.; Heine, C.; Jurgens, M.; Hess, R.; Schrader, M. Comb. Chem. High Throughput Screening 2001, 4, 207-217.
9. Schrader, M.; Schulz-Knappe, P. Trends Biotechnol. 2001, 19, S55-S60.
10. Baggerman, G.; Verleyen, P.; Clynen, E.; Huybrechts, J.; De Loof, A.; Schoofs, L. J. Chromatogr., B 2004, 803, 3-16.
11. Svensson, M.; Skold, K.; Svenningsson, P.; Andren, P. E. J. Proteome Res. 2003, 2, 213-219.
12. Falth, M.; Skold, K.; Norrman, M.; Svensson, M.; Fenyo, D.; Andren, P. E. Mol. Cell. Proteomics 2006, 5, 998-1005.
13. Yewdell, J. W. Science 2003, 301, 1334-1335.
14. Petricoin, E. F.; Ardekani, A. M.; Hitt, B. A.; Levine, P. J.; Fusaro, V. A.; Steinberg, S. M.; Mills, G. B.; Simone, C.; Fishman, D. A.; Kohn, E. C.; Liotta, L. A. Lancet 2002, 359, 572-577.
15. Villanueva, J.; Philip, J.; Entenberg, D.; Chaparro, C. A.; Tanwar, M. K.; Holland, E. C.; Tempst, P. Anal. Chem. 2004, 76, 1560-1570.
16. Skold, K.; Svensson, M.; Kaplan, A.; Bjorkesten, L.; Astrom, J.; Andren, P. E. Proteomics 2002, 2, 447-454.
17. Clynen, E.; Baggerman, G.; Veelaert, D.; Cerstiaens, A.; Van der Horst, D.; Harthoorn, L.; Derua, R.; Waelkens, E.; De Loof, A.; Schoofs, L. Eur. J. Biochem. 2001, 268, 1929-1939.
18. Fricker, L. D.; Lim, J. Y.; Pan, H.; Che, F. Y. Mass Spectrom. Rev. 2006, 25, 327-344.
19. Minamino, N.; Tanaka, J.; Kuwahara, H.; Kihara, T.; Satomi, Y.; Matsubae, M.; Takao, T. J. Chromatogr., B 2003, 792, 33-48.
20. Fricker, L. D. AAPS J. 2005, 7, E449-E455.
21. Liotta, L. A.; Petricoin, E. F. J. Clin. Invest. 2006, 116, 26-30.
22. Villanueva, J.; Shaffer, D. R.; Philip, J.; Chaparro, C. A.; Erdjument-Bromage, H.; Olshen, A. B.; Fleisher, M.; Lilja, H.; Brogi, E.; Boyd, J.; Sanchez-Carbayo, M.; Holland, E. C.; Cordon-Cardo, C.; Scher, H. I.; Tempst, P. J. Clin. Invest. 2006, 116, 271-284.
23. Villanueva, J.; Martorella, A. J.; Lawlor, K.; Philip, J.; Fleisher, M.; Robbins, R. J.; Tempst, P. Mol. Cell. Proteomics 2006, 5, 1840-1852.
24. Mian, S.; Ugurel, S.; Parkinson, E.; Schlenzka, I.; Dryden, I.; Lancashire, L.; Ball, G.; Creaser, C.; Rees, R.; Schadendorf, D. J. Clin. Oncol. 2005, 23, 5088-5093.
25. Robbins, R. J.; Villanueva, J.; Tempst, P. J. Clin. Oncol. 2005, 23, 4835-4837.
26. Cottingham, K. J. Proteome Res. 2006, 5, 1047-1048.
27. Traub, F.; Jost, M.; Hess, R.; Schorn, K.; Menzel, C.; Budde, P.; Schulz-Knappek, P.; Lamping, N.; Pich, A.; Kreipe, H.; Tammen, H. Lab. Invest. 2006, 86, 246-253.
28. Schulte, L.; Tammen, H.; Selle, H.; Schulz-Knappe, P. Expert Rev. Mol. Diagn. 2005, 5, 145-157.
29. He, F. C. Mol. Cell. Proteomics 2005, 4, 1841-1848.
30. Zheng, X. Y.; Baker, H.; Hancock, W. S. J. Chromatogr., A 2006, 1120, 173-184.
31. Tirumalai, R. S.; Chan, K. C.; Prieto, D. A.; Issaq, H. J.; Conrads, T. P.; Veenstra, T. D. Mol. Cell. Proteomics 2003, 2, 1096-1103.
32. Koomen, J. M.; Li, D. H.; Xiao, L. C.; Liu, T. C.; Coombes, K. R.; Abbruzzese, J.; Kobayashi, R. J. Proteome Res. 2005, 4, 972-981.
33. Diamandis, E. P. J. Proteome Res. 2006, 5, 2079-2082.
34. Matrisian, L. M.; Sledge, G. W.; Mohla, S. Cancer Res. 2003, 63, 6105-6109.
35. Boire, A.; Covic, L.; Agarwal, A.; Jacques, S.; Sherifl, S.; Kuliopulos, A. Cell 2005, 120, 303-313.
36. Zhang, Z.; Bast, R. C.; Yu, Y. H.; Li, J. N.; Sokoll, L. J.; Rai, A. J.; Rosenzweig, J. M.; Cameron, B.; Wang, Y. Y.; Meng, X. Y.; Berchuck, A.; van Haaften-Day, C.; Hacker, N. F.; de Bruijn, H. W. A.; van der Zee, A. G. J.; Jacobs, I. J.; Fung, E. T.; Chan, D. W. Cancer Res. 2004, 64, 5882-5890.
37. Peng, J. M.; Elias, J. E.; Thoreen, C. C.; Licklider, L. J.; Gygi, S. P. J. Proteome Res. 2003, 2, 43-50.
38. Xie, H.; Bandhakavi, S.; Griffin, T. J. Anal. Chem. 2005, 77, 3198-3207.