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Volumn 53, Issue 2, 2007, Pages 259-267

Transcriptional profiling of hematologic malignancies with a low-density DNA microarray

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MESSENGER RNA; OLIGONUCLEOTIDE;

EID: 33847395829     PISSN: 00099147     EISSN: None     Source Type: Journal    
DOI: 10.1373/clinchem.2006.075887     Document Type: Article
Times cited : (6)

References (35)
  • 2
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    • Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999;286:531-7.
    • (1999) Science , vol.286 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3    Huard, C.4    Gaasenbeek, M.5    Mesirov, J.P.6
  • 3
    • 0034598746 scopus 로고    scopus 로고
    • Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
    • Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 2000;403:503-11.
    • (2000) Nature , vol.403 , pp. 503-511
    • Alizadeh, A.A.1    Eisen, M.B.2    Davis, R.E.3    Ma, C.4    Lossos, I.S.5    Rosenwald, A.6
  • 4
    • 11144358111 scopus 로고    scopus 로고
    • Valk PJ, Verhaak RG, Beijen MA, Erpelinck CA, Barjesteh van Waalwijk van Doorn-Khosrovani S, Boer JM, et al. Prognostically useful gene-expression profiles in acute myeloid leukemia. N Engl J Med 2004;350:1617-28.
    • Valk PJ, Verhaak RG, Beijen MA, Erpelinck CA, Barjesteh van Waalwijk van Doorn-Khosrovani S, Boer JM, et al. Prognostically useful gene-expression profiles in acute myeloid leukemia. N Engl J Med 2004;350:1617-28.
  • 5
    • 0035803371 scopus 로고    scopus 로고
    • Relation of gene expression phenotype to immunoglobulin mutation genotype in B cell chronic lymphocytic leukemia
    • Rosenwald A, Alizadeh AA, Widhopf G, Simon R, Davis RE, Yu X, et al. Relation of gene expression phenotype to immunoglobulin mutation genotype in B cell chronic lymphocytic leukemia. J Exp Med 2001;194:1639-47.
    • (2001) J Exp Med , vol.194 , pp. 1639-1647
    • Rosenwald, A.1    Alizadeh, A.A.2    Widhopf, G.3    Simon, R.4    Davis, R.E.5    Yu, X.6
  • 7
    • 10744233751 scopus 로고    scopus 로고
    • Use of a low-density microarray for studying gene expression patterns induced by hepatotoxicants on primary cultures of rat hepatocytes
    • de Longueville F, Atienzar FA, Marcq L, Dufrane S, Evrard S, Wouters L, et al. Use of a low-density microarray for studying gene expression patterns induced by hepatotoxicants on primary cultures of rat hepatocytes. Toxicol Sci 2003;75:378-92.
    • (2003) Toxicol Sci , vol.75 , pp. 378-392
    • de Longueville, F.1    Atienzar, F.A.2    Marcq, L.3    Dufrane, S.4    Evrard, S.5    Wouters, L.6
  • 8
    • 10844235689 scopus 로고    scopus 로고
    • Microarray-based detection of multidrug resistance in human tumor cells by expression profiling of ATP-binding cassette transporter genes
    • Gillet JP, Efferth T, Steinbach D, Hamels J, de Longueville F, Bertholet V, et al. Microarray-based detection of multidrug resistance in human tumor cells by expression profiling of ATP-binding cassette transporter genes. Cancer Res 2004;64:8987-93.
    • (2004) Cancer Res , vol.64 , pp. 8987-8993
    • Gillet, J.P.1    Efferth, T.2    Steinbach, D.3    Hamels, J.4    de Longueville, F.5    Bertholet, V.6
  • 9
    • 11244346557 scopus 로고    scopus 로고
    • Variance stabilization applied to microarray data calibration and to the quantification of differential expression
    • Huber W, von Heydebreck A, Sultmann H, Poustka A, Vingron M. Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 2002;18(Suppl 1):96-104.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1 , pp. 96-104
    • Huber, W.1    von Heydebreck, A.2    Sultmann, H.3    Poustka, A.4    Vingron, M.5
  • 10
    • 0038048164 scopus 로고    scopus 로고
    • Statistical issues in cDNA microarray data analysis
    • Smyth GK, Yang YH, Speed T. Statistical issues in cDNA microarray data analysis. Methods Mol Biol 2003;224:111-36.
    • (2003) Methods Mol Biol , vol.224 , pp. 111-136
    • Smyth, G.K.1    Yang, Y.H.2    Speed, T.3
  • 12
    • 0037076272 scopus 로고    scopus 로고
    • Diagnosis of multiple cancer types by shrunken centroids of gene expression
    • Tibshirani R, Hastie T, Narasimhan B, Chu G. Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc Natl Acad Sci U S A 2002;99:6567-72.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 6567-6572
    • Tibshirani, R.1    Hastie, T.2    Narasimhan, B.3    Chu, G.4
  • 14
    • 0034730124 scopus 로고    scopus 로고
    • Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
    • Lee ML, Kuo FC, Whitmore GA, Sklar J. Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc Natl Acad Sci U S A 2000;97:9834-9.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 9834-9839
    • Lee, M.L.1    Kuo, F.C.2    Whitmore, G.A.3    Sklar, J.4
  • 15
    • 0035875553 scopus 로고    scopus 로고
    • Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
    • Tseng GC, Oh MK, Rohlin L, Liao JC, Wong WH. Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Res 2001;29:2549-57.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2549-2557
    • Tseng, G.C.1    Oh, M.K.2    Rohlin, L.3    Liao, J.C.4    Wong, W.H.5
  • 16
    • 33644844520 scopus 로고    scopus 로고
    • Microarray technology: Beyond transcript profiling and genotype analysis
    • Hoheisel JD. Microarray technology: beyond transcript profiling and genotype analysis. Nat Rev Genet 2006;7:200-10.
    • (2006) Nat Rev Genet , vol.7 , pp. 200-210
    • Hoheisel, J.D.1
  • 17
    • 0037076772 scopus 로고    scopus 로고
    • Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis
    • RESEARCH0033
    • Hoffmann R, Seidl T, Dugas M. Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis. Genome Biol 2002;3:RESEARCH0033.
    • (2002) Genome Biol , vol.3
    • Hoffmann, R.1    Seidl, T.2    Dugas, M.3
  • 18
    • 8144231112 scopus 로고    scopus 로고
    • The effect of normalization on microarray data analysis
    • Ding Y, Wilkins D. The effect of normalization on microarray data analysis. DNA Cell Biol 2004;23:635-42.
    • (2004) DNA Cell Biol , vol.23 , pp. 635-642
    • Ding, Y.1    Wilkins, D.2
  • 19
    • 0036356994 scopus 로고    scopus 로고
    • Assessment of the relationship between signal intensities and transcript concentration for Affymetrix GeneChip arrays
    • RESEARCH0005
    • Chudin E, Walker R, Kosaka A, Wu SX, Rabert D, Chang TK, et al. Assessment of the relationship between signal intensities and transcript concentration for Affymetrix GeneChip arrays. Genome Biol 2002;3:RESEARCH0005.
    • (2002) Genome Biol , vol.3
    • Chudin, E.1    Walker, R.2    Kosaka, A.3    Wu, S.X.4    Rabert, D.5    Chang, T.K.6
  • 22
    • 2942576225 scopus 로고    scopus 로고
    • Sources of variability and effect of experimental approach on expression profiling data interpretation
    • BaKay M, Chen YW, Borup R, Zhao P, Nagaraju K, Hoffman EP. Sources of variability and effect of experimental approach on expression profiling data interpretation. BMC Bioinformatics 2002;3:4.
    • (2002) BMC Bioinformatics , vol.3 , pp. 4
    • BaKay, M.1    Chen, Y.W.2    Borup, R.3    Zhao, P.4    Nagaraju, K.5    Hoffman, E.P.6
  • 25
    • 0022624829 scopus 로고
    • Cloning of a cDNA for a T cell-specific serine protease from a cytotoxic T lymphocyte
    • Gershenfeld HK, Weissman IL. Cloning of a cDNA for a T cell-specific serine protease from a cytotoxic T lymphocyte. Science 1986;232:854-8.
    • (1986) Science , vol.232 , pp. 854-858
    • Gershenfeld, H.K.1    Weissman, I.L.2
  • 27
    • 0021933901 scopus 로고
    • Close link between reduction of c-myc expression by interferon and, G0/G1 arrest
    • Einat M, Resnitzky D, Kimchi A. Close link between reduction of c-myc expression by interferon and, G0/G1 arrest. Nature 1985;313:597-600.
    • (1985) Nature , vol.313 , pp. 597-600
    • Einat, M.1    Resnitzky, D.2    Kimchi, A.3
  • 29
    • 0035866003 scopus 로고    scopus 로고
    • cDNA microarray gene expression analysis of B-cell chronic lymphocytic leukemia proposes potential new prognostic markers involved in lymphocyte trafficking
    • Stratowa C, Loffler G, Lichter P, Stilgenbauer S, Haberl P, Schweifer N, et al. cDNA microarray gene expression analysis of B-cell chronic lymphocytic leukemia proposes potential new prognostic markers involved in lymphocyte trafficking. Int J Cancer 2001;91:474-80.
    • (2001) Int J Cancer , vol.91 , pp. 474-480
    • Stratowa, C.1    Loffler, G.2    Lichter, P.3    Stilgenbauer, S.4    Haberl, P.5    Schweifer, N.6
  • 30
    • 0035803464 scopus 로고    scopus 로고
    • Gene expression profiling of B cell chronic lymphocytic leukemia reveals a homogeneous phenotype related to memory B cells
    • Klein U, Tu Y, Stolovitzky GA, Mattioli M, Cattoretti G, Husson H, et al. Gene expression profiling of B cell chronic lymphocytic leukemia reveals a homogeneous phenotype related to memory B cells. J Exp Med 2001;194:1625-38.
    • (2001) J Exp Med , vol.194 , pp. 1625-1638
    • Klein, U.1    Tu, Y.2    Stolovitzky, G.A.3    Mattioli, M.4    Cattoretti, G.5    Husson, H.6
  • 32
    • 0038203261 scopus 로고    scopus 로고
    • The distinct gene expression profiles of chronic lymphocytic leukemia and multiple myeloma suggest different anti-apoptotic mechanisms but predict only some differences in phenotype
    • Zent CS, Zhan F, Schichman SA, Bumm KH, Lin P, Chen JB, et al. The distinct gene expression profiles of chronic lymphocytic leukemia and multiple myeloma suggest different anti-apoptotic mechanisms but predict only some differences in phenotype. Leuk Res 2003;27:765-74.
    • (2003) Leuk Res , vol.27 , pp. 765-774
    • Zent, C.S.1    Zhan, F.2    Schichman, S.A.3    Bumm, K.H.4    Lin, P.5    Chen, J.B.6
  • 33
    • 0036936831 scopus 로고    scopus 로고
    • Expression profiling of B cell chronic lymphocytic leukemia suggests deficient GD1-mediated immunity, polarized cytokine response, altered adhesion and increased intracellular protein transport and processing of leukemic cells
    • Zheng Z, Venkatapathy S, Rao G, Harrington CA. Expression profiling of B cell chronic lymphocytic leukemia suggests deficient GD1-mediated immunity, polarized cytokine response, altered adhesion and increased intracellular protein transport and processing of leukemic cells. Leukemia 2002;16:2429-37.
    • (2002) Leukemia , vol.16 , pp. 2429-2437
    • Zheng, Z.1    Venkatapathy, S.2    Rao, G.3    Harrington, C.A.4
  • 35
    • 10244224128 scopus 로고    scopus 로고
    • Differences in gene expression between B-cell chronic lymphocytic leukemia and normal B cells: A meta-analysis of three microarray studies
    • Wang J, Coombes KR, Highsmith WE, Keating MJ, Abruzzo LV. Differences in gene expression between B-cell chronic lymphocytic leukemia and normal B cells: a meta-analysis of three microarray studies. Bioinformatics 2004;20:3166-78.
    • (2004) Bioinformatics , vol.20 , pp. 3166-3178
    • Wang, J.1    Coombes, K.R.2    Highsmith, W.E.3    Keating, M.J.4    Abruzzo, L.V.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.