메뉴 건너뛰기




Volumn 45, Issue 1, 2007, Pages 6-14

Computational identification and phylogenetic analysis of the MAPK gene family in Oryza sativa

Author keywords

Domain; Duplication; MAP kinase; Phylogenetic analysis; Rice

Indexed keywords

MITOGEN ACTIVATED PROTEIN KINASE;

EID: 33847344344     PISSN: 09819428     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plaphy.2006.12.011     Document Type: Article
Times cited : (44)

References (39)
  • 2
    • 0034649566 scopus 로고    scopus 로고
    • Arabidopsis Genome Initiative, Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative, Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408 (2000) 796-815
    • (2000) Nature , vol.408 , pp. 796-815
  • 3
    • 0037954572 scopus 로고    scopus 로고
    • Signalling specificity of Ser/Thr protein kinases through docking-site-mediated interactions
    • Biondi R.M., and Nebreda A.R. Signalling specificity of Ser/Thr protein kinases through docking-site-mediated interactions. Biochem. J. 372 (2003) 1-13
    • (2003) Biochem. J. , vol.372 , pp. 1-13
    • Biondi, R.M.1    Nebreda, A.R.2
  • 4
    • 0037313579 scopus 로고    scopus 로고
    • A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
    • Blanc G., Hokamp K., and Wolfe K.H. A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res. 13 (2003) 137-144
    • (2003) Genome Res. , vol.13 , pp. 137-144
    • Blanc, G.1    Hokamp, K.2    Wolfe, K.H.3
  • 5
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • Bowers J.E., Chapman B.A., Rong J., and Paterson A.H. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422 (2003) 433-438
    • (2003) Nature , vol.422 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 6
    • 0036289349 scopus 로고    scopus 로고
    • Crystal structures of MAP kinases p38 complexed to the docking sites on its nuclear substrate MEF2A and activator MKK3b
    • Chang C., Xu B., Akella R., Cobb M.H., and Goldsmith E.J. Crystal structures of MAP kinases p38 complexed to the docking sites on its nuclear substrate MEF2A and activator MKK3b. Mol. Cell 9 (2002) 1241-1249
    • (2002) Mol. Cell , vol.9 , pp. 1241-1249
    • Chang, C.1    Xu, B.2    Akella, R.3    Cobb, M.H.4    Goldsmith, E.J.5
  • 7
    • 0029106463 scopus 로고
    • A homologue of the MAP/ERK family of protein kinase genes is expressed in vegetative and in female reproductive organs of Petunia hybrida
    • Decroocq-Ferrant V., Decroocq S., van Went J., Schmidt E., and Kreis M. A homologue of the MAP/ERK family of protein kinase genes is expressed in vegetative and in female reproductive organs of Petunia hybrida. Plant Mol. Biol. 27 (1995) 339-350
    • (1995) Plant Mol. Biol. , vol.27 , pp. 339-350
    • Decroocq-Ferrant, V.1    Decroocq, S.2    van Went, J.3    Schmidt, E.4    Kreis, M.5
  • 8
    • 0036672847 scopus 로고    scopus 로고
    • Transcriptional regulation of a rice mitogen-activated protein kinase gene, OsMAPK4, in response to environmental stresses
    • Fu S.F., Chou W.C., Huang D.D., and Huang H.J. Transcriptional regulation of a rice mitogen-activated protein kinase gene, OsMAPK4, in response to environmental stresses. Plant Cell Physiol. 43 (2002) 958-963
    • (2002) Plant Cell Physiol. , vol.43 , pp. 958-963
    • Fu, S.F.1    Chou, W.C.2    Huang, D.D.3    Huang, H.J.4
  • 10
    • 4143051590 scopus 로고    scopus 로고
    • Ancestral genome duplication in rice
    • Guyot R., and Keller B. Ancestral genome duplication in rice. Genome 47 (2004) 610-614
    • (2004) Genome , vol.47 , pp. 610-614
    • Guyot, R.1    Keller, B.2
  • 11
    • 0033485693 scopus 로고    scopus 로고
    • BWMK1, a novel MAP kinase induced by fungal infection and mechanical wounding in rice
    • He C., Fong S.H.T., Yang D., and Wang G.L. BWMK1, a novel MAP kinase induced by fungal infection and mechanical wounding in rice. Mol. Plant-Microb. Interact. 12 (1999) 1064-1073
    • (1999) Mol. Plant-Microb. Interact. , vol.12 , pp. 1064-1073
    • He, C.1    Fong, S.H.T.2    Yang, D.3    Wang, G.L.4
  • 12
    • 0033529034 scopus 로고    scopus 로고
    • Protein modification: docking sites for kinases
    • Holland P.M., and Cooper J.A. Protein modification: docking sites for kinases. Curr. Biol. 9 (1999) 329-331
    • (1999) Curr. Biol. , vol.9 , pp. 329-331
    • Holland, P.M.1    Cooper, J.A.2
  • 13
    • 0036241872 scopus 로고    scopus 로고
    • Expression of Oryza sativa MAP kinase gene is developmentally regulated and stress-responsive
    • Huang H.J., Fu S.F., Tai Y.H., Chou W.C., and Huang D.D. Expression of Oryza sativa MAP kinase gene is developmentally regulated and stress-responsive. Physiol. Plant. 114 (2002) 572-580
    • (2002) Physiol. Plant. , vol.114 , pp. 572-580
    • Huang, H.J.1    Fu, S.F.2    Tai, Y.H.3    Chou, W.C.4    Huang, D.D.5
  • 14
    • 0029257283 scopus 로고
    • Gibberellin-regulated expression in oat aleurone cells of two kinases that show homology to MAP kinase and a ribosomal protein kinase
    • Huttly A.K., and Phillips A.L. Gibberellin-regulated expression in oat aleurone cells of two kinases that show homology to MAP kinase and a ribosomal protein kinase. Plant Mol. Biol. 27 (1995) 1043-1052
    • (1995) Plant Mol. Biol. , vol.27 , pp. 1043-1052
    • Huttly, A.K.1    Phillips, A.L.2
  • 15
    • 0038714319 scopus 로고    scopus 로고
    • Mitogen-activated protein kinase cascades in plants: a new nomenclature
    • Ichimura K., Shinozaki K., Tina G., Sheen J., Henry Y., et al. Mitogen-activated protein kinase cascades in plants: a new nomenclature. Trends Plant Sci. 7 (2002) 301-308
    • (2002) Trends Plant Sci. , vol.7 , pp. 301-308
    • Ichimura, K.1    Shinozaki, K.2    Tina, G.3    Sheen, J.4    Henry, Y.5
  • 17
    • 0033055185 scopus 로고    scopus 로고
    • MAP kinases in plant signal transduction
    • Jonak C., Ligterink W., and Hirt H. MAP kinases in plant signal transduction. Cell Mol. Life Sci. 55 (1999) 204-213
    • (1999) Cell Mol. Life Sci. , vol.55 , pp. 204-213
    • Jonak, C.1    Ligterink, W.2    Hirt, H.3
  • 18
    • 0029810059 scopus 로고    scopus 로고
    • Abscisic acid induces mitogen-activated protein kinase activation in barley aleuron protoplasts
    • Knetsch M.L.W., Wang M., Snaar-Jagalska B.E., and Heimovaara-Dijkstra S. Abscisic acid induces mitogen-activated protein kinase activation in barley aleuron protoplasts. Plant Cell 8 (1996) 1061-1067
    • (1996) Plant Cell , vol.8 , pp. 1061-1067
    • Knetsch, M.L.W.1    Wang, M.2    Snaar-Jagalska, B.E.3    Heimovaara-Dijkstra, S.4
  • 20
    • 26444515408 scopus 로고    scopus 로고
    • A sphingolipid elicitor-inducible mitogen-activated protein kinase is regulated by the small GTPase OsRac1 and heterotrimeric G-protein in rice
    • Lieberherr D., Thao N.P., Nakashima A., Umemura K., Kawasaki T., and Shimamoto K. A sphingolipid elicitor-inducible mitogen-activated protein kinase is regulated by the small GTPase OsRac1 and heterotrimeric G-protein in rice. Plant Physiol. 138 (2005) 1644-1652
    • (2005) Plant Physiol. , vol.138 , pp. 1644-1652
    • Lieberherr, D.1    Thao, N.P.2    Nakashima, A.3    Umemura, K.4    Kawasaki, T.5    Shimamoto, K.6
  • 23
    • 0031013737 scopus 로고    scopus 로고
    • Environmental stress response in plants: the role of mitogen-activated protein kinase
    • Mizoguchi T., Irie K., and Shinozaki K. Environmental stress response in plants: the role of mitogen-activated protein kinase. Trends Biotechnol. 15 (1997) 15-19
    • (1997) Trends Biotechnol. , vol.15 , pp. 15-19
    • Mizoguchi, T.1    Irie, K.2    Shinozaki, K.3
  • 25
    • 0032935664 scopus 로고    scopus 로고
    • Mitogen-activated protein kinases: specific messages from ubiquitous messengers
    • Schaeffer H.J., and Weber M.J. Mitogen-activated protein kinases: specific messages from ubiquitous messengers. Mol. Cell Biol. 19 (1999) 2435-2444
    • (1999) Mol. Cell Biol. , vol.19 , pp. 2435-2444
    • Schaeffer, H.J.1    Weber, M.J.2
  • 26
    • 16444378057 scopus 로고    scopus 로고
    • Evolution of NIN-like proteins in Arabidopsis, rice and Lotus japonicus
    • Schauser L., Wieloch W., and Stougaard J. Evolution of NIN-like proteins in Arabidopsis, rice and Lotus japonicus. J. Mol. Evol. 60 (2005) 229-237
    • (2005) J. Mol. Evol. , vol.60 , pp. 229-237
    • Schauser, L.1    Wieloch, W.2    Stougaard, J.3
  • 27
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartet and parallel computing
    • Schmidt H.A., Strimmer K., Vingron M., and von Haeseler A. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartet and parallel computing. Bioinformatics 18 (2002) 502-504
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 28
    • 0034284131 scopus 로고    scopus 로고
    • Docking domains and substrate-specificity determination for MAP kinases
    • Sharrocks A.D., Yang S.H., and Galanis A. Docking domains and substrate-specificity determination for MAP kinases. Trends Biochem. Sci. 25 (2000) 448-453
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 448-453
    • Sharrocks, A.D.1    Yang, S.H.2    Galanis, A.3
  • 29
    • 0036944850 scopus 로고    scopus 로고
    • OsBIMK1, a rice MAP kinase gene involved in disease resistance responses
    • Song F., and Goodman R.M. OsBIMK1, a rice MAP kinase gene involved in disease resistance responses. Planta 215 (2002) 997-1005
    • (2002) Planta , vol.215 , pp. 997-1005
    • Song, F.1    Goodman, R.M.2
  • 30
    • 0033180382 scopus 로고    scopus 로고
    • Elicitor- and A23187-induced expression of WCK-1, a gene encoding mitogen-activated protein kinase in wheat
    • Takezawa D. Elicitor- and A23187-induced expression of WCK-1, a gene encoding mitogen-activated protein kinase in wheat. Plant Mol. Biol. 40 (1999) 921-933
    • (1999) Plant Mol. Biol. , vol.40 , pp. 921-933
    • Takezawa, D.1
  • 31
    • 0033788484 scopus 로고    scopus 로고
    • A conserved docking motif in MAP kinases common to substrates, activators and regulators
    • Tanoue T., Adachi M., Moriguchi T., and Nishida E. A conserved docking motif in MAP kinases common to substrates, activators and regulators. Nat. Cell Biol. 2 (2000) 110-116
    • (2000) Nat. Cell Biol. , vol.2 , pp. 110-116
    • Tanoue, T.1    Adachi, M.2    Moriguchi, T.3    Nishida, E.4
  • 32
    • 0035254671 scopus 로고    scopus 로고
    • Identification of a docking groove on ERK and p38 MAP kinases that regulates the specificity of docking interactions
    • Tanoue T., Maeda R., Adachi M., and Nishida E. Identification of a docking groove on ERK and p38 MAP kinases that regulates the specificity of docking interactions. EMBO J. 20 (2001) 466-479
    • (2001) EMBO J. , vol.20 , pp. 466-479
    • Tanoue, T.1    Maeda, R.2    Adachi, M.3    Nishida, E.4
  • 33
    • 14244250895 scopus 로고    scopus 로고
    • Duplication and DNA segmental loss in the rice genome: implications for diploidization
    • Wang X., Shi X., Hao B., Ge S., and Luo J. Duplication and DNA segmental loss in the rice genome: implications for diploidization. New Phytol. 165 (2005) 937-946
    • (2005) New Phytol. , vol.165 , pp. 937-946
    • Wang, X.1    Shi, X.2    Hao, B.3    Ge, S.4    Luo, J.5
  • 34
    • 0028853790 scopus 로고
    • Molecular cloning, functional expression in Escherichia coli, and characterization of multiple mitogen-activated protein kinases from tobacco
    • Wilson C., Anglmayer R., Vicente O., and Heberle-Bors E. Molecular cloning, functional expression in Escherichia coli, and characterization of multiple mitogen-activated protein kinases from tobacco. Eur. J. Biochem. 233 (1995) 249-257
    • (1995) Eur. J. Biochem. , vol.233 , pp. 249-257
    • Wilson, C.1    Anglmayer, R.2    Vicente, O.3    Heberle-Bors, E.4
  • 36
    • 18244374199 scopus 로고    scopus 로고
    • The WRKY family of transcription factors in rice and Arabidopsis and their origins
    • Wu K.L., Guo Z.J., Wang H.H., and Li J. The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res. 12 (2005) 9-26
    • (2005) DNA Res. , vol.12 , pp. 9-26
    • Wu, K.L.1    Guo, Z.J.2    Wang, H.H.3    Li, J.4
  • 38
    • 13744258122 scopus 로고    scopus 로고
    • Two ancient rounds of polyploidy in rice genome
    • Zhang Y., Xu G., Guo X., and Fan L. Two ancient rounds of polyploidy in rice genome. J. Zhejiang Univ. SCI. 6B 2 (2005) 87-90
    • (2005) J. Zhejiang Univ. SCI. , vol.6 B , Issue.2 , pp. 87-90
    • Zhang, Y.1    Xu, G.2    Guo, X.3    Fan, L.4
  • 39
    • 33645850714 scopus 로고    scopus 로고
    • Molecular cloning and characterization of a novel MAP kinase gene in Chorispora bungeana
    • Zhang T., Liu Y., Xue L., Xu S., Chen T., Yang T., Zhang L., and An L. Molecular cloning and characterization of a novel MAP kinase gene in Chorispora bungeana. Plant Physiol. Biochem. 44 (2006) 78-84
    • (2006) Plant Physiol. Biochem. , vol.44 , pp. 78-84
    • Zhang, T.1    Liu, Y.2    Xue, L.3    Xu, S.4    Chen, T.5    Yang, T.6    Zhang, L.7    An, L.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.