Genetic structure and diversity of Oryza sativa L. in Guizhou, China

Chinese Science Bulletin

Volumn 52, Issue 3, 2007, Pages 343-351

  Zhang, DongLing ^a   Zhang, HongLiang ^a   Wei, XingHua ^b   Qi, YongWen ^a   Wang, MeiXing ^a   Sun, JunLi ^a   Ding, Li ^c   Tang, ShengXiang ^b   Qiu, Zong'En ^c   Cao, YongSheng ^c   Wang, XiangKun ^a   Li, ZiChao ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b CHINA NATIONAL RICE RESEARCH INSTITUTE   (China)

^c INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Asian cultivated rice (Oryza sativa L.); Genetic diversity; Genetic structure; Guizhou Province; Microsatellites; Phenotypic characters

Indexed keywords

JAPONICA; ORYZA SATIVA;

EID: 33847247399     PISSN: 10016538     EISSN: 18619541     Source Type: Journal    
DOI: 10.1007/s11434-007-0063-x     Document Type: Article

References (40)

1. Zhang Z X. Rice Germplasm resources of Guizhou. In: Ying C S. ed. Rice Germplasm Resources of China (in Chinese). Beijing: China Agriculture Press, 1993. 201-222
2. Chen H C, Jin T Y, You J M, et al. Analysis and evaluation on quality characters of rice germplasm resources in Guizhou. Guizhou Agric Sci (in Chinese), 1998, 26(3): 527
3. Chen H C, Zhang Z X, Ruan R C, et al. Evaluation and identification of tolerance to cold and resistance to drought on Guizhou HE (Oryza sativa L.) germplasm resources. Guizhou Agric Sci (in Chinese), 1999, 27(6): 38-40
4. Wei X H, Zhang L H, Luo L J, et al. Multilocational evaluation of the elite rice germplasm collected in Guizhou. J Southwest Agric Univ (in Chinese), 1997, (19): 334-337
5. Jin T Y, Zhang Z X, Chen H C, et al. Screening and observation on poly-embryonic seedings in rice germplyasm resources of Guizhou. Guizhou Agric Sci (in Chinese), 1999, 27(6): 44-46
6. Ruan R C, Chen H C, Yang Y S, et al. Screening of rice (Oryza sativa L.) germplasm with restoring genes to CMS from locavarieties collected in Guizhou. Guizhou Agric Sci (in Chinese), 1999, 27(6): 34-37
7. Ruan R C, Chen H C, You J M, et al. Assessment, conversation and utilization on elite rice genetic resources in Guizhou. Acta Bot Yunnan (in Chinese), 2001, (Suppl. XIII): 11-17
8. Yu X Q, Jiang X H, Wu H B, et al. SSR genetic diversity of cold-tolerant native rice varieties in Guizhou. Southwest China J Agric Sci (in Chinese), 2005, 18 (1): 1-4
9. Ruan R C, Chen H C, Zhang Z X, et al. Progress and prospects of research and utilization on genetic diversity of rice germplasm resources in Guizhou. Acta Bot Yunnan (in Chinese), 2000, (Suppl XII): 134-138
10. Wu K S, Tanksley S D. Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol Gen Genet, 1993, 241: 225-235
11. Yang G P, Saghai Maroof M A, Xu C G, et al. Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars rice. Theor Appl Genet, 1994, 245: 187-194
12. Chen X, Temnykh S, Xu Y, et al. Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L). Theor Appl Genet, 1997, 95: 553-567
13. Zhao X P, Kochert G. Characterization and genetic mapping of a short, highly repeated, interspersed DNA sequence from rice (Oryza sativa L). Theor Appl Genet, 1992, 231: 353-359
14. Svetlana T, Genevieve D C, Angelika L, et al. Computational and experimental analysis of microsatellites in rice (Oryza sativa L): Frequency, length variation, transposon associations, and genetic marker potential. Genome Res, 2001, 11: 1441-1452
15. Davierwala A P, Chowdari K V, Kumar S, et al. Use of three different marker systems to estimate genetic diversity of Indian elite rice varieties. Genetica, 2000, 108: 269-284
16. Zhou H F, Xie Z W, Ge S. Microsatellite analysis of genetic diversity and population genetic structure of a wild rice (Oryza rufipogon Griff) in China. Theor Appl Genet, 2003, 107: 332-339
17. Olufowote J O, Xu Y, Chen X, et al. Comparative evaluation of within-cultivar variation of rice (Oryza sativa L) using microsatellite and RFLP markers. Genome, 1997, 40: 370-378
18. Garland S H, Lewin L, Abedinia M, et al. The use of microsatellite polymorphisms for the identification of Australian breeding lines of rice (Oryza sativa L). Euphytica, 1999, 108: 53-63
19. Liu X C, Wu J L. SSR heterogenic patterns of parents for marking and predicting heterosis in rice breeding. Mol Breed, 1998, 4: 263-268
20. Li Z C. Studies on sampling strategy for core ccollection of Chinese landrace rice and genetic diversity of phenotypes and isozymes (in Chinese). Dissertation for the Doctoral Degree. Beijing: China Agricultural University, 2001. 22-39
21. SaghiMaroof M A, Soliman K M, Jorgensen A R, et al. Ribisinal DNA space length polymorphism in barley: Mendelian inheritance, chromosomal location and population dynamics. Proc Natl Acad Sci USA, 1984, 81: 8014-8018
22. Panaud O, Chen X L, McCouch S R. Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L). Mol Gen Genet, 1996, 252: 597-607
23. Sheldon A L. Equitability indices: Dependence on the species count. Ecology, 1969, 50: 466-467
24. Nei M. Analysis of diversity in subdivided populations. Proc Natl Acad Sci USA, 1973, 70: 3321-3323
25. Pritchard J K, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics, 2000, 155: 945-959
26. Falush D, Stephens M, Pritchard J K. Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics, 2003, 164: 1567-1587
27. Liu K, Muse S. PowerMarker: New Genetic Data Analysis Software, Version 2.7 (http://www.powermarker.net), 2004
28. Nei, M, Tajima F A. Tateno. Accuracy of estimated phylc- genetic trees from molecular data. J Mol Evol, 1983, 19: 153-170
29. Takezaki N, Nei M. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics, 1996, 144: 389-399
30. Vigouroux Y, Matsuoka Y, Doebley J. Directional evolutionary for microsatellite size in maize. Mol Biol Evol, 2003, 20: 1480-1483
31. Weir B S, Cockerham C C. Estimating F-statistics for the analysis of population structure. Evolution, 1984, 38: 1358-1370
32. Yang C D. Regionalization of rice cropping in Guizhou. In: Min S K, Wu X Z. Regionalization of Rice Cropping in China (in Chinese). Hangzhou: Zhejiang Science Technology Press, 1989. 99-103
33. Glaszman J C. Isozymes and classification of Asian rice varieties. Theor Appl Genet, 1987, 74: 21-30
34. Oka H I. Origin of Cultivated Rice. Tokyo: Jnp Sci Soc Press, 1988
35. Tang S X, Jiang Y Z, Wei X H, et al. Genetic diversity of isozymes of cultivated rice in China. Acta Agron Sin (in Chinese), 2002, 28(3): 203-207
36. Ting Y. The origin and evolution of cultivated rice in China. Acta Agron Sin (in Chinese), 1957, 8(3): 243-260
37. Cheng K S. A statistical evaluation of classification of rice cultivars into hsien and keng subspecies. Rice Genet Newsl, 1985, 2: 46-48
38. Garris A J, Tai T H, Coburn J, et al. Genetic structure and diversity in Oryza sativa L. Genetics. 2005, 169: 1631-1638
39. Semon M, Nielsen R, Jones P M, et al. The population structure of African Cultivated rice Oryza glaberrima (Steud.): Evidence for elevated levels of linkage disequilibrium caused by admixture with O. sativa and ecological adaptation. Genetics. 2005, 169: 1639-1647
40. Lu H, Redus M A, Coburn J R, et al. Population structure and breeding patterns of 145 U.S. rice cultivars based on SSR marker analysis. Crop Sci, 2005, 45: 66-76