Genetic changes possibly associated with progressive multifocal leukoencephalopathy

Brain and Nerve

Volumn 59, Issue 2, 2007, Pages 109-118

  Yogo, Yoshiaki ^a   Sugimoto, Chie ^b   Zheng, Huai Ying ^a   Kitamura, Tadaichi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b NATIONAL INSTITUTE OF BIOMEDICAL INNOVATION   (Japan)

Author keywords

Genetic changes; JC virus (JCV); Progressive multifocal leukoencephalopathy (PML); Regulatory region; VP 1 loop

Indexed keywords

DNA; PROTEIN VP1; CAPSID PROTEIN; UNCLASSIFIED DRUG; VIRUS DNA; VP1 PROTEIN, POLYOMAVIRUS;

ACQUIRED IMMUNE DEFICIENCY SYNDROME; ARTICLE; BRAIN; CEREBROSPINAL FLUID; DISEASE COURSE; HUMAN; IMMUNITY; JC VIRUS; PATHOGENESIS; PROGRESSIVE MULTIFOCAL LEUKOENCEPHALOPATHY; REGULATORY MECHANISM; AMINO ACID SUBSTITUTION; CHEMISTRY; GENE REARRANGEMENT; GENETICS; IMMUNE DEFICIENCY; LEUKOENCEPHALOPATHY; MUTATION; REVIEW; VIROLOGY; VIRUS GENE;

CAPSID PROTEINS; DISEASE PROGRESSION; DNA, VIRAL; GENE REARRANGEMENT; GENES, VIRAL; HUMANS; JC VIRUS; LEUKOENCEPHALOPATHY, PROGRESSIVE MULTIFOCAL; MUTATION; REGULATORY SEQUENCES, NUCLEIC ACID; ACQUIRED IMMUNODEFICIENCY SYNDROME; AMINO ACID SUBSTITUTION; BRAIN; IMMUNOCOMPROMISED HOST;

EID: 33847072607     PISSN: 00068969     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (31)

1. Japanese source
2. Padgett BL, Walker DL, ZuRhein GM, Eckroade RJ, Dessel BH: Cultivation of papova-like virus from human brain with progressive multifocal leucoencephalopathy. Lancet 1: 1257-1260, 1971
3. ) Martin JD, King DM, Slauch JM, Frisque RJ: Differences in regulatory sequences of naturally occurring JC virus variants. J Virol 53: 306-311, 1985
4. Yogo Y, Kitamura T, Sugimoto C, Ueki T, Aso Y, et al: Isolation of a possible archetypal JC virus DNA sequence from nonimmunocompromised individuals. J Virol 64: 3139-3143, 1990
5. Guo J, Kitamura T, Ebihara H, Sugimoto C, Kunitake T, et al: Geographical distribution of the human polyomavirus JC virus type A and B and isolation of a new type from Ghana. J Gen Virol 77: 919-927, 1996
6. Tominaga T, Yogo Y, Kitamura T, Aso Y: Persistence of archetypal JC virus DNA in normal renal tissue derived from tumor-bearing patients. Virology 186: 736-741, 1992
7. Kato A, Kitamura T, Takasaka T, Tominaga T, Ishikawa A, et al: Detection of the archetypal regulatory region of JC virus from the tonsil tissue of patients with tonsillitis and tonsilar hypertrophy. J Neurovirol 10: 244-249, 2004
8. Yogo Y, Sugimoto C: The archetype concept and regulatory region rearrangement. Human Polyomaviruses: Molecular and Clinical Perspectives, Khalili K, Stoner GL (ed), John Wiley & Sons, New York, 2001, pp127-148
9. Iida T, Kitamura T, Guo J, Taguchi F, Aso Y, et al: Origin of JC polyomavirus variants associated with progressive multifocal leukoencephalopathy. Proc Natl Acad Sci U S A 90: 5062-5065, 1993
10. Ault GS, Stoner GL: Human polyomavirus JC promoter/enhancer rearrangement patterns from progressive multifocal leukoencephalopathy brain are unique derivatives of a single archetypal structure. J Gen Virol 74: 1499-1507, 1993
11. Ault GS: Activity of JC virus archetype and PML-type regulatory regions in glial cells. J Gen Virol 78: 163-169, 1997
12. Sock E, Renner K, Feist D, Leger H, Wegner M: Functional comparison of PML-type and archetype strains of JC virus. J Virol 70: 1512-1520, 1996
13. Daniel AM, Swenson JJ, Mayreddy RP, Khalili K, Frisque RJ: Sequences within the early and late promoters of archetype JC virus restrict viral DNA replication and infectivity. Virology 216: 90-101, 1996
14. O'Neill FJ, Greenlee JE, Dörries K, Clawson SA, Carney H: Propagation of archetype and nonarchetype JC virus variants in human fetal brain cultures: demonstration of interference activity by arche-type JC virus. J Neurovirol 9: 567-765, 2003
15. Sugimoto C, Ito D, Tanaka K, Matsuda H, Saito H, et al: Amplification of JC virus regulatory DNA sequences from cerebrospinal fluid: diagnostic value for progressive multifocal leukoencephalopathy. Arch Virol 143: 249-262, 1998
16. Zheng HY, Takasaka T, Noda K, Kanazawa A, Mori H, et al: New sequence polymorphisms in the outer loops of the JC polyomavirus major capsid protein (VP1) possibly associated with progressive multifocal leukoencephalopathy. J Gen Virol 86: 2035-2045, 2005
17. Yogo Y, Sugimoto C, Zheng HY, Ikegaya H, Takasaka T, et al: JC virus genotyping offers a new paradigm in the study of human populations. Rev Med Virol 14: 179-191, 2004
18. Ikegaya H, Zheng HY, Saukko PJ, Varesmaa-Korhonen L, Hovi T, et al: Genetic diversity of JC virus in the Saami and the Finns: implications for their population history. Am J Phys Anthropol 128: 185-193, 2005
19. Zheng HY, Sugimoto C, Hasegawa M, Kobayashi N, Kanayama A, et al: Phylogenetic relationships among JC virus strains in Japanese/Koreans and Native Americans speaking Amerind or Na-Dene. J Mol Evol 56: 18-27, 2003
20. Zheng HY, Zhao P, Suganami H, Ohasi Y, Ikegaya H, et al: Regional distribution of two related Northeast Asian genotypes of JC virus, CY-a and -b: implications for the dispersal of Northeast Asians. Microbes Infect 6: 596-603, 2004
21. Liddington RC, Yan Y, Moulai J, Sahli R, Benjamin TL, et al: Structure of simian virus 40 at 3.8-A resolution. Nature 354: 278-284, 1991
22. Zheng HY, Ikegaya H, Takasaka T, Matsushima-Ohno T, Sakurai M, et al: Characterization of the VP1 loop mutations widespread among JC polyomavirus isolates associated with progressive multifocal leukoencephalopathy. Biochem Biophys Res Commun 333: 996-1002, 2005
23. Padgett BL, Walker L: Virologic and serologic studies of progressive multifocal leukoencephalopathy. Prog Clin Biol Res 105: 107-117, 1983
24. Weber T: Laboratory findings in progressive multifocal leukoencephalopathy. Human polyomaviruses: molecular and clinical perspectives, Khalili K, Stoner GL (ed), John Wiley & Sons, New York, 2001, pp337-358
25. Frisque RJ, Bream GL, Cannella MT: Human polyomavirus JC virus genome. J Virol 51: 458-469, 1984
26. Agostini HT, Ryschkewitsch CF, Singer EJ, Stoner GL: JC virus regulatory region rearrangements and genotypes in progressive multifocal leukoencephalopathy: two independent aspects of virus variation. J Gen Virol 78: 659-664, 1997
27. Kato K, Guo J, Taguchi F, Daimaru O, Tajima M, et al: Phylogenetic comparison between archetypal and disease-associated JC virus isolates in Japan. Jpn J Med Sci Biol 47: 167-178, 1994
28. Matsuda M, Jona M, Yasui K, Nagashima K: Genetic characterization of JC virus Tokyo-1 strain, a variant oncogenic in rodents. Virus Res 7: 159-168, 1987
29. Takahashi H, Yogo Y, Furuta Y, Takada A, Irie T, et al: Molecular characterization of a JC virus (Sap-1) clone derived from a cerebellar form of progressive multifocal leukoencephalopathy. Acta Neuropathol (Berl) 83: 105-112, 1992
30. Wakutani Y, Shimizu Y, Miura H, Nagashima K, Nakano T, et al: A case of brain-biopsy proven progressive multifocal leukoencephalopathy: pathological findings and analysis of JC virus regulatory region. Neuropathology 18: 347-351, 1998
31. Yogo Y, Guo J, Iida T, Satoh K, Taguchi F, et al: Occurrence of multiple JC virus variants with distinctive regulatory sequences in the brain of a single patient with progressive multifocal leukoencephalopathy. Virus Genes 8: 99-105, 1994