Sequences within the early and late promoters of archetype JC virus restrict viral DNA replication and infectivity

Virology

Volumn 216, Issue 1, 1996, Pages 90-101

  Daniel, Ann Marie ^a   Swenson, Jennifer J ^a   Mayreddy, Ravi P Reddy ^b   Khalili, Kamel ^b   Frisque, Richard J ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

^b THOMAS JEFFERSON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHLORAMPHENICOL ACETYLTRANSFERASE; VIRUS DNA;

ADULT; ARTICLE; BIOSYNTHESIS; CELL CULTURE; CELL LINE; CYTOLOGY; DNA REPLICATION; GENE EXPRESSION REGULATION; GENETIC RECOMBINATION; GENETICS; GLIA; HUMAN; JC VIRUS; KIDNEY PROXIMAL TUBULE; MUTATION; PATHOGENICITY; PROMOTER REGION; VIRION; VIRUS GENOME; VIRUS REPLICATION; CONTROLLED STUDY; HUMAN CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; VIRUS INFECTIVITY;

ADULT; CELL LINE; CELL LINE, TRANSFORMED; CHLORAMPHENICOL O-ACETYLTRANSFERASE; DNA REPLICATION; DNA, VIRAL; GENE EXPRESSION REGULATION, VIRAL; GENOME, VIRAL; HUMANS; JC VIRUS; KIDNEY TUBULES, PROXIMAL; MUTATION; NEUROGLIA; PROMOTER REGIONS (GENETICS); RECOMBINATION, GENETIC; TUMOR CELLS, CULTURED; VIRION; VIRUS REPLICATION;

EID: 0029669993     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1996.0037     Document Type: Article

References (69)

1. Amirhaeri, S., Wohlrab, F., Major, E. O., and Wells, R. (1988). Unusual DNA structure in the regulatory region of the human papovavirus JC virus. J. Virol. 62, 922-931.
2. Atencio, I. A., Shadan, F. F., Zhou, X. J., Vaziri, N. D., and Villarreal, L. P. (1993). Adult mouse kidneys become permissive to acute polyomavirus infection and reactivate persistent infections in response to cellular damage and regeneration. J. Virol. 67, 1424-1432.
3. Atwood, W. J., Wang, L., Durham, L. C., Amemiya, K., Traub, R. G., and Major, E. O. (1995). Evaluation of the role of cytokine activation in the multiplication of JC virus (JCV) in human fetal glial cells. J. Neuro-Virol. 1, 40-49.
4. Ault, G. S., and Stoner, G. L. (1993). Human polyomavirus JC promoter/ enhancer rearrangement patterns from progressive multifocal leukoencephalopathy brain are unique derivatives of a single archetypal structure. J. Gen. Virol. 74, 1499-1507.
5. Berger, J. R., Kasovitz, B., Donovan Post, M. J., and Dickinson, G. (1987). Progressive multifocal leukoencephalopathy associated with human immunodeficiency virus infection. Ann. Intern. Med. 107, 78-87.
6. Bollag, B., Chuke, W.-F., and Frisque, R. J. (1989). Hybrid genomes of the polyomaviruses JC virus, BK virus, and simian virus 40: Identification of sequences important for efficient transformation. J. Virol. 63, 863-872.
7. Chang, C. F., Tada, H., and Khalili, K. (1994). The role of a pentanucleotide repeat sequence, AGGGAAGGGA, in the regulation of JC virus DNA replication. Gene 148, 309-314.
8. Chen, N. N., Chang, C.-F., Gallia, G. L., Kerr, D. A., Johnson, E. M., Krachmarov, C. P., Barr, S. M., Frisque, R. J., Bollag, B., and Khalili, K. (1995). Cooperative action of cellular proteins YB-1 and Pur alpha with the tumor antigen of the human JC polyomavirus determines their interaction with the viral lytic control element. Proc. Natl. Acad. Sci. USA 92, 1087-1091.
9. Dörries, K., and ter Meulen, V. (1983). Progressive multifocal leucoencephalopathy: Detection of papovavirus JC in kidney tissue. J. Med. Virol. 11, 307-317.
10. Dörries, K., Vogel, E., Günther, S., and Czub, S. (1994). Infection of human polyomaviruses JC and BK in peripheral blood leukocytes from immunocompetent individuals. Virology 198, 59-70.
11. Elsner, C., and Dörries, K. (1992). Evidence of human polyomavirus-BK and polyomavirus-JC infection in normal brain tissue. Virology 191, 72-80.
12. Feigenbaum, L., Khalili, K., Major, E., and Khoury, G. (1987). Regulation of the host range of human papovavirus JCV. Proc. Natl. Acad. Sci. USA 84, 3695-3698.
13. Frisque, R. J. (1983). Nucleotide sequence of the region encompassing the JC virus origin of DNA replication. J. Virol. 46, 170-176.
14. Frisque, R. J., and White, F. A., III (1992). The molecular biology of JC virus, causative agent of progressive multifocal leukoencephalopathy. In "Molecular Neurovirology" (R. Roos, Ed.), pp. 25-158. Humana Press, Totowa, NJ.
15. Frisque, R. J., Bream, G. L., and Cannella, M. T. (1984). Human polyomavirus JC virus genome. J. Virol. 51, 458-469.
16. Gorman, C. M., Moffat, L. F., and Howard, B. H. (1982). Recombinant genomes which express chloramphenicol acetyltransferase in mammalian cells. Mol. Cell. Biol. 2, 1044-1051.
17. Graham, F. L., and van der Eb, A. J. (1973). A new technique for the assay of infectivity of human adenovirus 5 DNA. Virology 52, 456-467.
18. Greenlee, J. E., Phelps, R. C., and Stroop, W. G. (1991). The major site of murine K-papovavirus persistence and reactivation is the renal tubular epithelium. Microb. Pathog. 11, 237-247.
19. Grinnell, B. W., Padgett, B. L., and Walker, D. L. (1983). Comparison of infectious JC virus DNAs cloned from human brain. J. Virol. 45, 299-308.
20. Grinnell, B. W., Berg, D. T., and Walls, J. D. (1988). Negative regulation of the human polyomavirus BK enhancer involves cell-specific interaction with a nuclear repressor. Mol. Cell. Biol. 8, 3448-3457.
21. Hara, K., Oya, Y., Kinoshita, H., Taguchi, F., and Yogo, Y. (1986). Sequence reiteration required for the efficient growth of BK virus. J. Gen. Virol. 67, 2555-2559.
22. Henson, J. W. (1994). Regulation of the glial-specific JC virus early promoter by the transcription factor-Sp1. J. Biol. Chem. 269, 1046-1050.
23. Hirt, B. (1967). Selective extraction of polyoma DNA from infected mouse cell cultures. J. Mol. Biol. 26, 365-369.
24. Hogan, T. F., Padgett, B. L., Walker, D. L., Borden, E. C., and McBain, J. A. (1980). Rapid detection and identification of JC virus and BK virus in human urine by using immunofluorescence microscopy. J. Clin. Microbiol. 11, 178-183.
25. Iida, T., Kitamura, T., Guo, J., Taguchi, F., Aso, Y., Nagashima, K., and Yogo, Y. (1993). Origin of JC polyomavirus variants associated with progressive multifocal leukoencephalopathy. Proc. Natl. Acad. Sci. USA 90, 5062-5065.
26. Ilyinskii, P. O., Daniel, M. D., Horvath, C. J., and Desrosiers, R. C. (1992). Genetic analysis of simian virus 40 from brains and kidneys of macaque monkeys. J. Virol. 66, 6353-6360.
27. Johnsen, J. I., Seternes, O. M., Johansen, T., Moens, U., Mäntyjärvi, R., and Traavik, T. (1995). Subpopulations of non-coding region variants within a cell culture-passaged stock of BK virus: Sequence comparisons and biological characteristics. J. Gen. Virol. 76, 1571-1581.
28. Kenney, S., Natarajan, V., Strike, D., Khoury, G., and Salzman, N. P. (1984). JC virus enhancer-promoter active in human brain cells. Science 226, 1337-1339.
29. Kerr, D., Chang, C. F., Chen, N. C., Gallia, G., Raj, G., Schwartz, B., and Khalili, K. (1994). Transcription of a human neurotropic virus promoter in glial cells: Effect of YB-1 on expression of the JC virus late gene. J. Virol. 68, 7637-7643.
30. Kitamura, T., Kunitake, T., Guo, J., Tominaga, T., Kawabe, K., and Yogo, Y. (1994). Transmission of the human polyomavirus JC virus occurs both within the family and outside the family. J. Clin. Microbiol. 32, 2359-2363.
31. Krupp, L. B., Lipton, R. B., Swerdlow, M. L., Leeds, N. E., and Llena, J. (1985). Progressive multifocal leukoencephalopathy: Clinical and radiographic features. Ann. Neurol. 17, 344-349.
32. Kumar, G., Srivastava, D. K., and Tefera, W. (1994). A 70- to 80-kDa glial cell protein interacts with the AGGGAAGGGA domain of the JC virus early promoter only in the presence of the neighboring cis DNA elements. Virology 203, 116-124.
33. Lednicky, J. A., Wong, C., and Butel, J. S. (1995). Artificial modification of the viral regulatory region improves tissue culture growth of SV40 strain 776. Virus Res. 35, 143-153.
34. Li, J. J., and Kelly, T. J. (1985). Simian virus 40 DNA replication in vitro: Specificity of initiation and evidence for bidirectional replication. Mol. Cell. Biol. 5, 1238-1246.
35. Loeber, G., and Dörries, K. (1988). DNA rearrangements in organ-specific variants of polyomavirus JC strain GS. J. Virol. 62, 1730-1735.
36. Luckow, B., and Schutz, G. (1987). CAT constructions with multiple unique restriction sites for the functional analysis of eucaryotic promoters and regulatory elements. Nucleic Acids Res. 15, 5490.
37. Lynch, K. J., and Frisque, R. J. (1990). Identification of critical elements within the JC virus DNA replication origin. J. Virol. 64, 5812-5822.
38. Major, E. O., Amemiya, K., Tornatore, C. S., Houff, S. A., and Berger, J. R. (1992). Pathogenesis and molecular biology of progressive multifocal leukoencephalopathy, the JC virus-induced demyelinating disease of the human brain. Clin. Microbiol. Rev. 5, 49-73.
39. Mandl, C., Walker, D. L., and Frisque, R. J. (1987). Derivation and characterization of POJcells, transformed human fetal glial cells that retain their permissivity for JC virus. J. Virol. 61, 755-763.
40. Markowitz, R.-B., Tolbert, S., and Dynan, W. S. (1990). Promoter evolution in BK virus: Functional elements are created at sequence junctions. J. Virol. 64, 2411-2415.
41. Markowitz, R.-B., Eaton, B. A., Kubik, M. F., Latorra, D., McGregor, J. A., and Dynan, W. S. (1991). BKvirus and JC virus shed during pregnancy have predominantly archetypal regulatory regions. J. Virol. 65, 4515-4519.
42. Martin, J. D., King, D. M., Sauch, J. M., and Frisque, R. J. (1985). Differences in regulatory sequences of naturally occurring JC virus variants. J. Virol. 53, 306-311.
43. Miyamura, T., Furuno, A., and Yoshiike, K. (1985). DNA rearrangement in the control region for early transcription in a human polyomavirus JC host range mutant capable of growing in human embryonic kidney cells. J. Virol. 54, 750-756.
44. Mori, M., Aoki, N., Shimada, H., Tajima, M., and Kato, K. (1992). Detection of JC virus in the brains of aged patients without progressive multifocal leukoencephalopathy by the polymerase chain reaction and Southern hybridization analysis. Neurosci. Lett. 141, 151-155.
45. Myers, C., Frisque, R. J., and Arthur, R. R. (1989). Direct isolation and characterization of JC virus from urine samples of renal and bone marrow transplant patients. J. Virol. 63, 4445-4449.
46. Negrini, M., Sabbioni, S., Arthur, R. R., Castagnoli, A., and Barbanti-Brodano, G. (1991). Prevalence of the archetypal regulatory region and sequence polymorphisms in nonpassaged BK virus variants. J. Virol. 65, 5092-5095.
47. Padgett, B. L., Walker, D. L., Zu Rhein, G. M., Eckroade, R. J., and Dessel, B. H. (1971). Cultivation of a papova-like virus from human brain with progressive multifocal leukoencephalopathy. Lancet i, 1257-1260.
48. Padgett, B. L., Rogers, C. M., and Walker, D. L. (1977). JC virus, a human polyoma virus associated with progressive multifocal leukoencephalopathy: Additional biological characteristics and antigenic relationships. Infect. Immun. 15, 656-662.
49. Peden, K. W. C., Pipas, J. M., Pearson-White, S., and Nathans, D. (1980). Isolation of mutants of an animal virus in bacteria. Science 209, 1392-1396.
50. Quinlivan, E. B., Norris, M., Bouldin, T. W., Suzuki, K., Meeker, R., Smith, M. S., Hall, C., and Kenney, S. (1992). Subclinical central nervous system infection with JC virus in patients with AIDS. J. Infect. Dis. 166, 80-85.
51. Raj, G. V., and Khalili, K. (1994). Identification and characterization of a novel GGA/C-binding protein, GBP-i that is rapidly inducible by cytokines. Mol. Cell. Biol. 14, 7770-7781.
52. Raj, G. V., and Khalili, K. (1995). Transcriptional regulation: Lessons from the human neurotropic polyomavirus, JCV. Virology 213, 283-291.
53. Ranganathan, P. N., and Khalili, K. (1993). The transcriptional enhancer element, kappa-B, regulates promoter activity of the human neurotropic virus, JCV, in cells derived from the CNS. Nucleic Acids Res. 21, 1959-1964.
54. Rubinstein, R., Pare, N., and Harley, E. H. (1987). Structure and function of the transcriptional control region of nonpassaged BK virus. J. Virol. 61, 1747-1750.
55. Rubinstein, R., Schoonakker, B. C. A., and Harley, E. H. (1991). Recurring theme of changes in the transcriptional control region of BK-virus during adaptation to cell culture. J. Virol. 65, 1600-1604.
56. Sock, E., Wegner, M., and Grummt, F. (1991). DNA replication of human polyomavirus-JC is stimulated by NF-I in vivo. Virology 182, 298-308.
57. Sompayrac, L. M., and Danna, K. J. (1981). Efficient infection of monkey cells with DNA of simian virus 40. Proc. Natl. Acad. Sci. USA 78, 7575-7578.
58. Sundsfjord, A., Spein, A. R., Lucht, E., Flaegstad, T., Seternes, O. M., and Traavik, T. (1994). Detection of BK virus DNA in nasopharyngeal aspirates from children with respiratory infections but not in saliva from immunodeficient and immunocompetent adult patients. J. Clin. Microbiol. 32, 1390-1394.
59. Tada, H., and Khalili, K. (1992). A novel sequence-specific DNA-binding protein, LCP-1, interacts with single-stranded DNA and differentially regulates early gene expression of the human neurotropic JC virus. J. Virol. 66, 6885-6892.
60. L promoter function: Evidence that a pentanucleotide "silencer" repeat sequence AGGGAAGGGA down-regulates transcription of the JC virus late promoter. Virology 180, 327-338.
61. Todd, J. H., McMartin, K., and Sens, D. A. (1995). Enzymatic isolation and serum-free culture of human renal cells retaining properties of proximal tubule cells. In "Methods in Molecular Biology" (J. Walker and G. E. Jones, Eds.), Vol. XX, in press. Humana Press, Totowa, NJ.
62. Tooze, J. (1981). "Molecular Biology of Tumor Viruses," Part 2, "DNA Tumor Viruses." Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
63. Tornatore, C., Berger, J. R., Houff, S. A., Curfman, B., Meyers, K., Winfield, D., and Major, E. O. (1992). Detection of JC virus DNA in peripheral lymphocytes from patients with and without progressive multifocal leukoencephalopathy. Ann. Neurol. 31, 454-462.
64. Tornatore, C., Amemiya, K., Atwood, W., Conant, K., Major, E. O., and Berger, J. (1994). JC virus: Current concepts and controversies in the molecular virology and pathogenesis of progressive multifocal leucoencephalopathy. Rev. Med. Virol. 4, 197-219.
65. Walker, D. L., and Frisque, R. J. (1986). The biology and molecular biology of JC virus. In "The Papovaviridae, the Polyomaviruses" (N. Salzman, Ed.), Vol. I, pp. 327-377. Plenum, New York.
66. Watanabe, S., and Yoshiike, K. (1986). Evolutionary changes of transcriptional control region in a minute-plaque viable deletion mutant of BK virus. J. Virol. 59, 260-266.
67. White, F. A., III, Ishaq, M., Stoner, G. L., and Frisque, R. J. (1992). JC virus DNA is present in many human brain samples from patients without progressive multifocal leukoencephalopathy. J. Virol. 66, 5726-5734.
68. Yogo, Y., Kitamura, T., Sugimoto, C., Ueki, T., Aso, Y., Hara, K., and Taguchi, F. (1990). Isolation of a possible archetypical JC virus DNA sequence from nonimmunocompromised individuals. J. Virol. 64, 3139-3143.
69. Yogo, Y., Kitamura, T., Sugimoto, C., Hara, K., Iida, T., Taguchi, F., Tajima, A., Kawabe, K., and Aso, Y. (1991). Sequence rearrangement in JC virus DNAs molecularly cloned from immunosuppressed renal transplant patients. J. Virol. 65, 2422-2428.