메뉴 건너뛰기




Volumn 86, Issue 7, 2005, Pages 2035-2045

New sequence polymorphisms in the outer loops of the JC polyomavirus major capsid protein (VP1) possibly associated with progressive multifocal leukoencephalopathy

Author keywords

[No Author keywords available]

Indexed keywords

AZATHIOPRINE; CAPSID PROTEIN; CYTARABINE; IMMUNOGLOBULIN; INTERLEUKIN 2; PREDNISOLONE; STEROID;

EID: 20744440962     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.80863-0     Document Type: Article
Times cited : (36)

References (51)
  • 1
  • 2
    • 0031902469 scopus 로고    scopus 로고
    • JC virus type 1 has multiple subtypes: Three new complete genomes
    • Agostini, H. T., Ryschkewitsch, C. F. & Stoner, G. L. (1998a). JC virus type 1 has multiple subtypes: three new complete genomes. J Gen Virol 79, 801-805.
    • (1998) J. Gen. Virol. , vol.79 , pp. 801-805
    • Agostini, H.T.1    Ryschkewitsch, C.F.2    Stoner, G.L.3
  • 3
    • 0032057595 scopus 로고    scopus 로고
    • Complete genome of a JC virus genotype type 6 from the brain of an African American with progressive multifocal leukoencephalopathy
    • Agostini, H. T., Ryschkewitsch, C. F. & Stoner, G. L. (1998b). Complete genome of a JC virus genotype type 6 from the brain of an African American with progressive multifocal leukoencephalopathy. J Hum Virol 1, 267-272.
    • (1998) J. Hum. Virol. , vol.1 , pp. 267-272
    • Agostini, H.T.1    Ryschkewitsch, C.F.2    Stoner, G.L.3
  • 5
    • 0034996988 scopus 로고    scopus 로고
    • Genotypes of JC virus in East, Central and Southwest Europe
    • 7 other authors
    • Agostini, H. T., Deckhut, A., Jobes, D. V. & 7 other authors (2001). Genotypes of JC virus in East, Central and Southwest Europe. J Gen Virol 82, 1221-1231.
    • (2001) J. Gen. Virol. , vol.82 , pp. 1221-1231
    • Agostini, H.T.1    Deckhut, A.2    Jobes, D.V.3
  • 6
    • 0033025060 scopus 로고    scopus 로고
    • Immunohistochemical detection of JC virus in nontumorous renal tissue of a patient with renal cancer but without progressive multifocal leukoencephalopathy
    • Aoki, N., Kitamura, T., Tominaga, T., Fukumori, N., Sakamoto, Y., Kato, K. & Mori, M. (1999). Immunohistochemical detection of JC virus in nontumorous renal tissue of a patient with renal cancer but without progressive multifocal leukoencephalopathy. J Clin Microbiol 37, 1165-1167.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 1165-1167
    • Aoki, N.1    Kitamura, T.2    Tominaga, T.3    Fukumori, N.4    Sakamoto, Y.5    Kato, K.6    Mori, M.7
  • 7
    • 0031023677 scopus 로고    scopus 로고
    • Activity of JC virus archetype and PML-type regulatory regions in glial cells
    • Ault, G. S. (1997). Activity of JC virus archetype and PML-type regulatory regions in glial cells. J Gen Virol 78, 163-169.
    • (1997) J. Gen. Virol. , vol.78 , pp. 163-169
    • Ault, G.S.1
  • 8
    • 0346364657 scopus 로고    scopus 로고
    • Amino acid properties and consequences of substitutions
    • Edited by M. R. Barnes & I. C. Gray. New York: Wiley
    • Betts, M. J. & Russell, R. B. (2003). Amino acid properties and consequences of substitutions. In Bioinformatics for Geneticists. Edited by M. R. Barnes & I. C. Gray. New York: Wiley.
    • (2003) Bioinformatics for Geneticists
    • Betts, M.J.1    Russell, R.B.2
  • 10
    • 0020611190 scopus 로고
    • Persistence of DNA sequences of BK virus and JC virus in normal human tissues and in diseased tissues
    • Chesters, P. M., Heritage, J. & McCance, D. J. (1983). Persistence of DNA sequences of BK virus and JC virus in normal human tissues and in diseased tissues. J Infect Dis 147, 676-684.
    • (1983) J. Infect. Dis. , vol.147 , pp. 676-684
    • Chesters, P.M.1    Heritage, J.2    McCance, D.J.3
  • 11
    • 2342601791 scopus 로고    scopus 로고
    • Chinese strains (type 7) of JC virus are Afro-Asiatic in origin but are phylogenetically distinct from the Mongolian and Indian strains (type 2D) and the Korean and Japanese strains (type 2A)
    • Cui, X., Wang, J. C., Deckhut, A., Joseph, B. C., Eberwein, P., Cubitt, C. L., Ryschkewitsch, C. F., Agostini, H. T. & Stoner, G. L. (2004). Chinese strains (type 7) of JC virus are Afro-Asiatic in origin but are phylogenetically distinct from the Mongolian and Indian strains (type 2D) and the Korean and Japanese strains (type 2A). J Mol Evol 58, 568-583.
    • (2004) J. Mol. Evol. , vol.58 , pp. 568-583
    • Cui, X.1    Wang, J.C.2    Deckhut, A.3    Joseph, B.C.4    Eberwein, P.5    Cubitt, C.L.6    Ryschkewitsch, C.F.7    Agostini, H.T.8    Stoner, G.L.9
  • 12
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 13
  • 14
    • 0030716946 scopus 로고    scopus 로고
    • Review: JC virus infection of lymphocytes - Revisited
    • Gallia, G. L., Houff, S. A., Major, E. O. & Khalili, K. (1997). Review: JC virus infection of lymphocytes - revisited. J Infect Dis 176, 1603-1609.
    • (1997) J. Infect. Dis. , vol.176 , pp. 1603-1609
    • Gallia, G.L.1    Houff, S.A.2    Major, E.O.3    Khalili, K.4
  • 15
    • 10344256189 scopus 로고    scopus 로고
    • Modeling a sialic acid binding pocket in the external loops of JC virus VP1
    • Gee, G. V., Tsomaia, N., Mierke, D. F. & Atwood, W. J. (2004). Modeling a sialic acid binding pocket in the external loops of JC virus VP1. J Biol Chem 279, 49172-49176.
    • (2004) J. Biol. Chem. , vol.279 , pp. 49172-49176
    • Gee, G.V.1    Tsomaia, N.2    Mierke, D.F.3    Atwood, W.J.4
  • 16
    • 0025890363 scopus 로고
    • Pathological features of virus infections of the central nervous system (CNS) in the acquired immunodeficiency syndrome (AIDS)
    • Hall, W. W., Farmer, P. M., Takahashi, H., Tanaka, S., Furuta, Y. & Nagashima, K. (1991). Pathological features of virus infections of the central nervous system (CNS) in the acquired immunodeficiency syndrome (AIDS). Acta Pathol Jpn 41, 172-181.
    • (1991) Acta Pathol. Jpn. , vol.41 , pp. 172-181
    • Hall, W.W.1    Farmer, P.M.2    Takahashi, H.3    Tanaka, S.4    Furuta, Y.5    Nagashima, K.6
  • 18
    • 2942746609 scopus 로고    scopus 로고
    • Detection of identical JC virus DNA sequences in both human kidneys
    • Ikegaya, H., Iwase, H. & Yogo, Y. (2004). Detection of identical JC virus DNA sequences in both human kidneys. Arch Viral 149, 1215-1220.
    • (2004) Arch. Viral. , vol.149 , pp. 1215-1220
    • Ikegaya, H.1    Iwase, H.2    Yogo, Y.3
  • 19
    • 21444460295 scopus 로고    scopus 로고
    • Genetic diversity of JC virus in the Saami and the Finns: Implications for their population history
    • 9 other authors (in press)
    • Ikegaya, H., Zheng, H.-Y., Saukko, P. J. & 9 other authors (2005). Genetic diversity of JC virus in the Saami and the Finns: implications for their population history. Am J Phys Anthropol (in press).
    • (2005) Am. J. Phys. Anthropol.
    • Ikegaya, H.1    Zheng, H.-Y.2    Saukko, P.J.3
  • 20
    • 0033752414 scopus 로고    scopus 로고
    • Lack of disease-specific amino acid changes in the viral proteins of JC virus isolates from the brain with progressive multifocal leukoencephalopathy
    • Kato, A., Sugimoto, C., Zheng, H.-Y., Kitamura, T. & Yogo, Y. (2000). Lack of disease-specific amino acid changes in the viral proteins of JC virus isolates from the brain with progressive multifocal leukoencephalopathy. Arch Virol 145, 2173-2182.
    • (2000) Arch. Virol. , vol.145 , pp. 2173-2182
    • Kato, A.1    Sugimoto, C.2    Zheng, H.-Y.3    Kitamura, T.4    Yogo, Y.5
  • 21
    • 4344610328 scopus 로고    scopus 로고
    • Detection of the archetypal regulatory region of JC virus from the tonsil tissue of patients with tonsillitis and tonsilar hypertrophy
    • Kato, A., Kitamura, T., Takasaka, T., Tominaga, T., Ishikawa, A., Zheng, H.-Y. & Yogo, Y. (2004). Detection of the archetypal regulatory region of JC virus from the tonsil tissue of patients with tonsillitis and tonsilar hypertrophy. J Neurovirol 10, 244-249.
    • (2004) J. Neurovirol. , vol.10 , pp. 244-249
    • Kato, A.1    Kitamura, T.2    Takasaka, T.3    Tominaga, T.4    Ishikawa, A.5    Zheng, H.-Y.6    Yogo, Y.7
  • 22
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 25
    • 0023876678 scopus 로고
    • DNA rearrangements in organ-specific variants of polyomavirus JC strain GS
    • Loeber, G. & Dörries, K. (1988). DNA rearrangements in organ-specific variants of polyomavirus JC strain GS. J Virol 62, 1730-1735.
    • (1988) J. Virol. , vol.62 , pp. 1730-1735
    • Loeber, G.1    Dörries, K.2
  • 26
    • 0142106298 scopus 로고    scopus 로고
    • Propagation of archetype and nonarchetype JC virus variants in human fetal brain cultures: Demonstration of interference activity by archetype JC virus
    • O'Neill, F. J., Greenlee, J. E., Dörries, K., Clawson, S. A. & Carney, H. (2003). Propagation of archetype and nonarchetype JC virus variants in human fetal brain cultures: demonstration of interference activity by archetype JC virus. J Neurovirol 9, 567-576.
    • (2003) J. Neurovirol. , vol.9 , pp. 567-576
    • O'Neill, F.J.1    Greenlee, J.E.2    Dörries, K.3    Clawson, S.A.4    Carney, H.5
  • 27
    • 0015611076 scopus 로고
    • Prevalence of antibodies in human sera against JC virus, an isolate from a case of progressive multifocal leukoencephalopathy
    • Padgett, B. L. & Walker, D. L. (1973). Prevalence of antibodies in human sera against JC virus, an isolate from a case of progressive multifocal leukoencephalopathy. J Infect Dis 127, 467-470.
    • (1973) J. Infect. Dis. , vol.127 , pp. 467-470
    • Padgett, B.L.1    Walker, D.L.2
  • 28
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page, R. D. M. (1996). TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 29
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 30
    • 0036661985 scopus 로고    scopus 로고
    • Peopling of Myanmar as demonstrated by genotyping of urinary JC virus DNA
    • & 7 other authors
    • Saruwatari, L., Zheng, H.-Y., Takasaka, T. & 7 other authors (2002). Peopling of Myanmar as demonstrated by genotyping of urinary JC virus DNA. Anthropol Sci 110, 235-249.
    • (2002) Anthropol. Sci. , vol.110 , pp. 235-249
    • Saruwatari, L.1    Zheng, H.-Y.2    Takasaka, T.3
  • 31
    • 4444328217 scopus 로고    scopus 로고
    • Synthesis and assembly of polyomavirus virions
    • Edited by K. Khalili & G. L. Stoner. New York: Wiley
    • Shishido-Hara, Y. & Nagashima, K. (2001). Synthesis and assembly of polyomavirus virions. In Human Polyomaviruses: Molecular and Clinical Perspectives, pp. 149-177. Edited by K. Khalili & G. L. Stoner. New York: Wiley.
    • (2001) Human Polyomaviruses: Molecular and Clinical Perspectives , pp. 149-177
    • Shishido-Hara, Y.1    Nagashima, K.2
  • 32
    • 0030025529 scopus 로고    scopus 로고
    • Functional comparison of PML-type and archetype strains of JC virus
    • Sock, E., Renner, K., Feist, D., Leger, H. & Wegner, M. (1996). Functional comparison of PML-type and archetype strains of JC virus. J Virol 70, 1512-1520.
    • (1996) J. Virol. , vol.70 , pp. 1512-1520
    • Sock, E.1    Renner, K.2    Feist, D.3    Leger, H.4    Wegner, M.5
  • 34
    • 0037008842 scopus 로고    scopus 로고
    • JC virus strains indigenous to northeastern Siberians and Canadian Inuits are unique but evolutionally related to those distributed throughout Europe and Mediterranean areas
    • & 14 other authors
    • Sugimoto, C., Hasegawa, M., Zheng, H.-Y. & 14 other authors (2002b). JC virus strains indigenous to northeastern Siberians and Canadian Inuits are unique but evolutionally related to those distributed throughout Europe and Mediterranean areas. J Mol Evol 55, 322-335.
    • (2002) J. Mol. Evol. , vol.55 , pp. 322-335
    • Sugimoto, C.1    Hasegawa, M.2    Zheng, H.-Y.3
  • 36
    • 33144458391 scopus 로고    scopus 로고
    • Phylogenetic analysis of the major African genotype (Af2) of JC virus: Implications for the origin and dispersals of modern Africans
    • (in press)
    • Takasaka, T., Kitamura, T., Sugimoto, C., Guo, J., Zheng, H.-Y. & Yogo, Y. (2005). Phylogenetic analysis of the major African genotype (Af2) of JC virus: Implications for the origin and dispersals of modern Africans. Am J Phys Anthropol (in press).
    • (2005) Am. J. Phys. Anthropol.
    • Takasaka, T.1    Kitamura, T.2    Sugimoto, C.3    Guo, J.4    Zheng, H.-Y.5    Yogo, Y.6
  • 37
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 38
    • 0026540524 scopus 로고
    • Persistence of archetypal JC virus DNA in normal renal tissue derived from tumor-bearing patients
    • Tominaga, T., Yogo, Y., Kitamura, T. & Aso, Y. (1992). Persistence of archetypal JC virus DNA in normal renal tissue derived from tumor-bearing patients. Virology 186, 736-741.
    • (1992) Virology , vol.186 , pp. 736-741
    • Tominaga, T.1    Yogo, Y.2    Kitamura, T.3    Aso, Y.4
  • 39
    • 4043092770 scopus 로고    scopus 로고
    • Phylogenetic evidence of widespread distribution of genotype 3 JC virus in Africa and identification of a type 7 isolate in an African AIDS patient
    • Venter, M., Smit, S. B., Leman, P. & Swanepoel, R. (2004). Phylogenetic evidence of widespread distribution of genotype 3 JC virus in Africa and identification of a type 7 isolate in an African AIDS patient. J Gen Virol 85, 2215-2219.
    • (2004) J. Gen. Virol. , vol.85 , pp. 2215-2219
    • Venter, M.1    Smit, S.B.2    Leman, P.3    Swanepoel, R.4
  • 40
    • 0000288084 scopus 로고
    • Progressive multifocal leukoencephalopathy
    • Edited by P. J. Vinken, G. W. Bruyn, H. L. Klawans & J. C. Koetsier. Amsterdam: Elsevier
    • Walker, D. L. (1985). Progressive multifocal leukoencephalopathy. In Handbook of Clinical Neurology Demyelinating Diseases, vol. 3 (47), pp. 503-524. Edited by P. J. Vinken, G. W. Bruyn, H. L. Klawans & J. C. Koetsier. Amsterdam: Elsevier.
    • (1985) Handbook of Clinical Neurology Demyelinating Diseases , vol.3 , Issue.47 , pp. 503-524
    • Walker, D.L.1
  • 41
    • 0001878361 scopus 로고    scopus 로고
    • The archetype concept and regulatory region rearrangement
    • Edited by K. Khalili & G. L. Stoner. New York: Wiley
    • Yogo, Y. & Sugimoto, C. (2001). The archetype concept and regulatory region rearrangement. In Human Polyomaviruses: Molecular and Clinical Perspectives, pp. 127-148. Edited by K. Khalili & G. L. Stoner. New York: Wiley.
    • (2001) Human Polyomaviruses: Molecular and Clinical Perspectives , pp. 127-148
    • Yogo, Y.1    Sugimoto, C.2
  • 42
    • 0025302980 scopus 로고
    • Isolation of a possible archetypal JC virus DNA sequence from nonimmunocompromised individuals
    • Yogo, Y., Kitamura, T., Sugimoto, C., Ueki, T., Aso, Y., Hara, K. & Taguchi, F. (1990). Isolation of a possible archetypal JC virus DNA sequence from nonimmunocompromised individuals. J Virol 64, 3139-3143.
    • (1990) J. Virol. , vol.64 , pp. 3139-3143
    • Yogo, Y.1    Kitamura, T.2    Sugimoto, C.3    Ueki, T.4    Aso, Y.5    Hara, K.6    Taguchi, F.7
  • 43
    • 0026018182 scopus 로고
    • Typing of human polyomavirus JC virus on the basis of restriction fragment length polymorphisms
    • Yogo, Y., Iida, T., Taguchi, F., Kitamura, T. & Aso, Y. (1991a). Typing of human polyomavirus JC virus on the basis of restriction fragment length polymorphisms. J Clin Microbiol 29, 2130-2138.
    • (1991) J. Clin. Microbiol. , vol.29 , pp. 2130-2138
    • Yogo, Y.1    Iida, T.2    Taguchi, F.3    Kitamura, T.4    Aso, Y.5
  • 44
    • 0025873580 scopus 로고
    • Sequence rearrangement in JC virus DNAs molecularly cloned from immunosuppressed renal transplant patients
    • Yogo, Y., Kitamura, T., Sugimoto, C., Hara, K., Iida, T., Taguchi, F., Tajima, A., Kawabe, K. & Aso, Y. (1991b). Sequence rearrangement in JC virus DNAs molecularly cloned from immunosuppressed renal transplant patients. J Virol 65, 2422-2428.
    • (1991) J. Virol. , vol.65 , pp. 2422-2428
    • Yogo, Y.1    Kitamura, T.2    Sugimoto, C.3    Hara, K.4    Iida, T.5    Taguchi, F.6    Tajima, A.7    Kawabe, K.8    Aso, Y.9
  • 45
    • 0028197505 scopus 로고
    • Occurrence of multiple JC virus variants with distinctive regulatory sequences in the brain of a single patient with progressive multifocal leukoencephalopathy
    • Yogo, Y., Guo, J., Iida, T., Satoh, K., Taguchi, F., Takahashi, H., Hall, W. W. & Nagashima, K. (1994). Occurrence of multiple JC virus variants with distinctive regulatory sequences in the brain of a single patient with progressive multifocal leukoencephalopathy. Virus Genes 8, 99-105.
    • (1994) Virus Genes , vol.8 , pp. 99-105
    • Yogo, Y.1    Guo, J.2    Iida, T.3    Satoh, K.4    Taguchi, F.5    Takahashi, H.6    Hall, W.W.7    Nagashima, K.8
  • 48
    • 0037225466 scopus 로고    scopus 로고
    • Phylogenetic relationships among JC virus strains in Japanese/Koreans and Native Americans speaking Amerind or Na-Dene
    • 8 other authors
    • Zheng, H.-Y., Sugimoto, C., Hasegawa, M. & 8 other authors (2003). Phylogenetic relationships among JC virus strains in Japanese/Koreans and Native Americans speaking Amerind or Na-Dene. J Mol Evol 56, 18-27.
    • (2003) J. Mol. Evol. , vol.56 , pp. 18-27
    • Zheng, H.-Y.1    Sugimoto, C.2    Hasegawa, M.3
  • 49
    • 1042279146 scopus 로고    scopus 로고
    • Unambiguous identification of JC polyomavirus strains transmitted from parents to children
    • Zheng, H.-Y., Kitamura, T., Takasaka, T., Chen, Q. & Yogo, Y. (2004a). Unambiguous identification of JC polyomavirus strains transmitted from parents to children. Arch Virol 149, 261-273.
    • (2004) Arch. Virol. , vol.149 , pp. 261-273
    • Zheng, H.-Y.1    Kitamura, T.2    Takasaka, T.3    Chen, Q.4    Yogo, Y.5
  • 50
    • 1542314277 scopus 로고    scopus 로고
    • Stability of JC virus coding sequences in a case of progressive multifocal leukoencephalopathy in which the viral control region was rearranged markedly
    • Zheng, H.-Y., Yasuda, Y., Kato, S., Kitamura, T. & Yogo, Y. (2004b). Stability of JC virus coding sequences in a case of progressive multifocal leukoencephalopathy in which the viral control region was rearranged markedly. Arch Pathol Lab Med 128, 275-278.
    • (2004) Arch. Pathol. Lab. Med. , vol.128 , pp. 275-278
    • Zheng, H.-Y.1    Yasuda, Y.2    Kato, S.3    Kitamura, T.4    Yogo, Y.5
  • 51
    • 2542506557 scopus 로고    scopus 로고
    • Regional distribution of two related Northeast Asian genotypes of JC virus, CY-a and -b: Implications for the dispersal of Northeast Asians
    • & 7 other authors
    • Zheng, H.-Y., Zhao, P., Suganami, H. & 7 other authors (2004c). Regional distribution of two related Northeast Asian genotypes of JC virus, CY-a and -b: implications for the dispersal of Northeast Asians. Microbes Infect 6, 596-603.
    • (2004) Microbes Infect. , vol.6 , pp. 596-603
    • Zheng, H.-Y.1    Zhao, P.2    Suganami, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.