Chloroplast phosphoglycerate kinase, a gluconeogenetic enzyme, is required for efficient accumulation of Bamboo mosaic virus

Nucleic Acids Research

Volumn 35, Issue 2, 2007, Pages 424-432

  Lin, Jen Wen ^a   Ding, Min Pey ^a   Hsu, Yau Heiu ^a   Tsai, Ching Hsiu ^a  

^a NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

COAT PROTEIN; PHOSPHOGLYCERATE KINASE; POLYADENYLIC ACID; PROTEIN P43; PROTEIN P51; RNA BINDING PROTEIN; RNA DIRECTED RNA POLYMERASE; VIRUS PROTEIN;

3' UNTRANSLATED REGION; ARTICLE; CHLOROPLAST; CONTROLLED STUDY; ENZYME ACTIVITY; GEL MOBILITY SHIFT ASSAY; GENE SILENCING; GLUCONEOGENESIS; NONHUMAN; PLANT VIRUS; PRIORITY JOURNAL; PROTEIN CROSS LINKING; PROTEIN PROTEIN INTERACTION; PROTEIN RNA BINDING; RNA SYNTHESIS; VIRAL PLANT DISEASE; VIRUS VIRULENCE;

3' UNTRANSLATED REGIONS; BASE SEQUENCE; BINDING SITES; CHLOROPLASTS; GENE SILENCING; GLUCONEOGENESIS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHOSPHOGLYCERATE KINASE; PLANT PROTEINS; POLY(A)-BINDING PROTEINS; POTEXVIRUS; RNA, VIRAL;

BAMBOO MOSAIC VIRUS;

EID: 33846928207     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl1061     Document Type: Article

References (60)

1. Lai,M.M. (1998) Cellular factors in the transcription and replication of viral RNA genomes: A parallel to DNA-dependent RNA transcription. Virology, 244, 1-12.
2. Ahlquist,P., Noueiry,A.O., Lee,W.M., Kushner,D.B. and Dye,B.T. (2003) Host factors in positive-strand RNA virus genome replication. J. Virol., 77, 8181-8186.
3. Blumenthal,T. and Carmichael,G.G. (1979) RNA replication: Function and structure of Qb-replicase. Annu. Rev. Biochem., 48, 435-548.
4. Barrera,I., Schuppli,D., Sogo,J.M. and Weber,H. (1993) Different mechanisms of recognition of bacteriophage Qb plus and minus strand RNAs by Qβ replicase. J. Mol. Biol., 232, 512-431.
5. Blackwell,J.L. and Brinton,M.A. (1997) Translation elongation factor-1 alpha interacts with the 30 stem-loop region of West Nile virus genomic RNA. J. Virol., 71, 6433-6444.
6. Zeenko,V.V., Ryabova,A., Apirin,A.S., Rothnie,H.M., Hess,D., Browning,K.S. and Hohn,T. (2002) Eukaryotic elongation factor 1A interacts with the upstream pseudoknot domain in the 3′-untranslated region of tobacco mosaic virus RNA. J. Virol., 76, 5678-5691.
7. Matsuda,D., Yoshinari,S. and Dreher,T.W. (2004) eEF1A binding to aminoacylated viral RNA represses minus strand synthesis by TYMV RNA-dependent RNA polymerase. Virology, 321, 47-56.
8. Hellen,C.U.T., Witherell,G.W., Schmid,M., Shin,S.H., Pestova,T.V., Gil,A. and Wimmer,E. (1993) A cytoplasmic 57 kDa protein that is required for translation of picornavirus RNA by internal ribosomal entry is identical to the nuclear pyrimidine tract-binding protein. Proc. Natl Acad. Sci. USA, 90, 7642-7646.
9. Meerovitch,K., Svitkin,Y.V., Lee,H.S., Lejbkowicz,F., Kenan,D.J., Chan,E.K., Agol,V.I., Keene,J.D. and Sonenberg,N. (1993) La autoantigen enhances and corrects aberrant translation of poliovirus RNA in reticulocyte lysate. J. Virol., 67, 3798-3807.
10. Chang,Y.N., Kenan,D.J., Keene,J.D., Gatignol,A. and Jeang,K.T. (1994) Direct interactions between autoantigen La and human immunodeficiency virus leader RNA. J. Virol., 68, 7008-7020.
11. Svitkin,Y.V., Pause,A. and Sonenberg,N. (1994) La autoantigen alleviates translational repression by the 50 leader sequence of the human immunodeficiency virus type 1 mRNA. J. Virol., 68, 7001-7007.
12. Black,A.C., Luo,J., Chun,S., Bakker,A., Faser,J.K. and Rosenblatt,J.D. (1996) Specific binding of polypyrimidine tract binding protein and hnRNP A1 to HIV-1 CRS elements. Virus Genes, 12, 275-285.
13. Hu,J. and Seeger,C. (1996) Hsp90 is required for the activity of a hepatitis B virus reverse transcriptase. Proc. Natl Acad. Sci. USA, 93, 1051-1064.
14. McBride,A.E., Schlegel,A. and Kirkegaard,K. (1996) Human protein Sam68 relocalization and interaction with poliovirus RNA polymerase in infected cells. Proc. Natl Acad. Sci. USA, 93, 2296-2301.
15. Ali,N. and Siddiqui,A. (1997) The La antigen binds 5′ noncoding region of the hepatitis C virus RNA in the context of the initiator AUG codon and stimulates internal ribosome entry site-mediated translation. Proc. Natl Acad. Sci. USA, 94, 2249-2254.
16. Tsuchihara,K., Tanaka,T., Hijikata,M., Kuge,S., Toyoda,H., Nomoto,A., Yamamoto,N. and Shimotohno,K. (1997) Specific interaction of polypyrimidine tract-binding protein with the extreme 3′-terminal structure of the hepatitis C virus genome, the 3′X. J. Virol., 71, 6720-6726.
17. Das,T., Mathur,M., Gupta,A.K., Janssen,G.M.C. and Banerjee,A.K. (1998) RNA polymerase of vesicular stomatitis virus specifically associates with translation elongation factor-1 αβγ or its activity. Proc. Natl Acad. Sci. USA, 95, 1451-1465.
18. Serva,S. and Nagy,P.D. (2006) Proteomic analysis of the tombusvirus replicase: Hsp70 molecular chaperone is associated with the replicase and enhances viral RNA replication. J. Virol., 80, 2162-2169.
19. Harris,K.S., Xiang,W., Alexander,L., Lane,W.S., Paul,A.V. and Wimmer,E. (1994) Interaction of poliovirus polypeptide 3CDpro with the 5′ and 3′ termini of the poliovirus genome: Identification of viral and cellular cofactors needed for efficient binding. J. Biol. Chem., 269, 27004-27014.
20. Blyn,L.B., Towner,J.S., Semler,B.L. and Ehrenfeld,E. (1997) Requirement of poly(rC) binding protein 2 for translation of poliovirus RNA. J. Virol., 71, 6243-6246.
21. Diez,J., Ishikawa,M., Kaido,M. and Ahlquist,P. (2000) Identification and characterization of a host protein required for efficient template selection in viral RNA replication. Proc. Natl Acad. Sci. USA, 97, 3913-3918.
22. Walter,B.L., Parsley,T.B., Ehrenfeld,E. and Semler,B.L. (2002) Distinct poly(rC) binding protein KH domain determinants for poliovirus translation initiation and viral RNA replication. J. Virol., 76, 12008-12022.
23. Lin,H.X. and White,K.A. (2004) A complex network of RNA-RNA interactions controls subgenomic mRNA transcription in a tombusvirus. EMBO J., 23, 3365-3374.
24. Lin,M.T., Kitajima,E.W., Cupertino,F.P. and Costa,C.L. (1977) Partial purification and some properties of bamboo mosaic virus. Phytopathology, 67, 1439-1443.
25. Lin,N.S., Lin,B.Y., Lo,N.W., Hu,C.C., Chow,T.Y. and Hsu,Y.H. (1994) Nucleotide sequence of the genomic RNA of bamboo mosaic potexvirus. J. Gen. Virol., 75, 2513-2518.
26. Li,Y.I., Chen,Y.J., Hsu,Y.H. and Meng,M. (2001) Characterization of the AdoMet-dependent guanylyltransferase activity that is associated with the N terminus of bamboo mosaic virus replicase. J. Virol., 75, 782-788.
27. 7GMP-enzyme intermediate in the capping enzyme domain of bamboo mosaic virus. J. Virol., 78, 1271-1280.
28. Li,Y.I., Cheng,Y.M., Huang,Y.L., Tsai,C.H., Hsu,Y.H. and Meng,M. (1998) Identification and characterization of the Escherichia coli-expressed RNA-dependent RNA polymerase of bamboo mosaic virus. J. Virol., 72, 10093-10099.
29. Li,Y.I., Shih,T.W., Hsu,Y.H., Han,Y.T., Huang,Y.L. and Meng,M. (2001b) The helicase-like domain of plant potexvirus replicase participates in formation of RNA 50 cap structure by exhibiting RNA 5′-triphosphatase activity. J. Virol., 75, 12114-12120.
30. Liou,D.Y., Hsu,Y.H., Wung,C.H., Wang,W.H., Lin,N.S. and Chang,B.Y. (2000) Functional analyses and identification of two arginine residues essential to the ATP-utilizing activity of the triple gene block protein 1 of bamboo mosaic potexvirus. Virology, 277, 336-344.
31. Cheng,J.H., Ding,M.P., Hsu,Y.H. and Tsai,C.H. (2001) The partial purified RNA-dependent RNA polymerases from bamboo mosaic potexvirus and potato virus X infected plants containing the template-dependent activities. Virus Res., 80, 41-43.
32. Lin,M.K., Chang,B.Y., Liao,J.T., Lin,N.S. and Hsu,Y.H. (2004) Arg-16 and Arg-21 in the N-terminal region of the triple-gene-block protein 1 of Bamboo mosaic virus are essential for virus movement. J. Gen. Virol., 85, 251-259.
33. Cheng,C.P. and Tasi,C.H. (1999) Structural and functional analysis of the 3′ untranslated region of bamboo mosaic potexvirus genomic RNA. J. Mol. Biol., 288, 555-565.
34. Chiu,W.W., Hsu,Y.H. and Tsai,C.H. (2002) Specificity analysis of the conserved hexanucleotides for the replication of bamboo mosaic potexvirus RNA. Virus Res., 83, 159-167.
35. Chen,I.H., Meng,M., Hsu,Y.H. and Tsai,C.H. (2003) Functional analysis of the cloverleaf-like structure in the 3′-untranslated region of bamboo mosaic potexvirus RNA revealed dual roles in viral RNA replication and long distance movement. Virology, 315, 415-424.
36. Huang,C.Y., Huang,Y.L., Meng,M., Hsu,Y.H. and Tsai,C.H. (2001) Sequences at the 3′-untranslated region of bamboo mosaic potexvirus RNA interact with the viral RNA-dependent RNA polymerase. J. Virol., 75, 2818-2824.
37. Cheng,J.H., Peng,C.W., Hsu,Y.H. and Tsai,C.H. (2002) The synthesis of minus-strand RNA of bamboo mosaic potexvirus initiates from multiple sites within the poly(A) tail. J. Virol., 76, 6114-6120.
38. Pawlowski,K., Kunze,R., De Vries,S. and Bisseling,T. (1994) Isolation of total, poly(A) and polysomal RNA from plant tissues. In Gelvin,S.B. and Shilperoort,R.A. (eds), Plant Molecular Biology Manual. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 1-13.
39. Buck,K.W. (1999) Replication of tobacco mosaic virus RNA. Philos. Trans. R. Soc. Lond. B. Biol. Sci., 354, 613-627.
40. Strauss,J.H. and Strauss,E.G. (1999) Viral RNA replication: With a little help from the host. Science, 283, 802-804.
41. Blumenthal,T. (1980) Interaction of host-coded and virus-coded polypeptides in RNA phage replication. Proc. R. Soc. Lond. B. Biol. Sci., 210, 321-335.
42. Quadt,R., Kao,C.C., Browning,K.S., Hershberger,R.P. and Ahlquist,P. (1993) Characterization of a host protein associated with brome mosaic virus RNA-dependent RNA polymerase. Proc. Natl Acad. Sci. USA, 90, 1498-1502.
43. Joshi,R.L., Ravel,J.M. and Haenni,A.L. (1986) Interaction of turnip yellow mosaic virus Val-RNA with eukaryotic elongation factor EF-1a. Search for a function. EMBO J., 5, 1143-1148.
44. Mans,R.M.W., Pleij,C.W.A. and Bosch,L. (1991) tRNA-like structures. Function and evolutionary significance. Eur. J. Biochem., 201, 303-324.
45. Dreher,T.W., Uhlenbeck,O.C. and Browning,K.S. (1999) Quantitative assessment of EF-1·GTP binding to aminoacyl-tRNAs, aminoacyl-viral RNA, and tRNA shows close correspondence to the RNA binding properties of EF-Tu. J. Biol. Chem., 274, 666-672.
46. Kolakofsky,D. and Weissmann,C. (1971) Possible mechanism for transition of viral RNA from polysome to replication complex. Nature New Biol., 231, 42-46.
47. Kolakofsky,D. and Weissmann,C. (1971) Qb replicase as repressor of Qβ RNA-directed protein synthesis. Biochim. Biophys. Acta, 246, 596-599.
48. Barton,D.J., Morasco,B.J. and Flanegan,J.B. (1999) Translating ribosomes inhibit poliovirus negative-strand RNA synthesis. J. Virol., 73, 10104-10112.
49. Gamarnik,A. and Andino,R. (1998) Switch from translation to RNA replication in a positive-stranded RNA virus. Genes Dev., 12, 2293-2304.
50. Houwing,C.J. and Jaspars,E.M.J. (1986) Coat protein blocks the in vitro transcription of the virion RNAs of alfalfa mosaic virus. FEBS Lett., 209, 284-288.
51. Olsthoorn,R.C., Mertens,S., Brederode,F.T. and Bol,J.F. (1999) A conformational switch at the 3′ end of a plant virus RNA regulates viral replication. EMBO J., 18, 4856-4864.
52. Bastin,M. and Hall,T.C. (1976) Interaction of elongation factor 1 with aminoacylated brome mosaic virus and tRNA's. J. Virol., 20, 117-122.
53. Watson,H.C. and Littlechild,J.A. (1990) Isoenzymes of phosphoglycerate kinase: Evolutionary conservation of the structure of this glycolytic enzyme. Biochem. Soc. Trans., 18, 187-190.
54. Popanda,O., Fox,G. and Thielmann,H.W. (1998) Modulation of DNA polymerases alpha, delta and epsilon by lactate dehydrogenase and 3-phosphoglycerate kinase. Biochim. Biophys. Acta, 1397, 102-117.
55. Jindal,H.K. and Vishwanatha,J.K. (1990) Functional identity of a primer recognition protein as phosphoglycerate kinase. J. Biol. Chem., 265, 6540-6543.
56. Vishwanatha,J.K., Jindal,H.K. and Davis,R.G. (1992) The role of primer recognition proteins in DNA replication: Association with nuclear matrix in HeLa cells. J. Cell. Sci., 101, 25-34.
57. Ogino,T., Iwama,M., Kinouchi,J., Shibagaki,Y., Tsukamoto,T. and Mizumoto,K. (1999) Involvement of a cellular glycolytic enzyme, phosphoglycerate kinase, in Sendai virus transcription. J. Biol. Chem., 274, 35999-36008.
58. Shetty,S., Muniyappa,H., Halady,P.K.S. and Idell,S. (2004) Regulation of urokinase receptor expression by phosphoglycerate kinase. Am. J. Respir. Cell. Mol. Biol., 31, 100-106.
59. Banks,R.D., Blake,C.C.F., Evans,P.R., Haser,R., Rice,D.W., Hardy,G.W., Merrett,M. and Phillips,A.W. (1979) Sequence, structure and activity of phosphoglycerate kinase: A possible hinge-bending enzyme. Nature, 279, 773-777.
60. McHarg,J., Kelly,S.M., Price,N.C., Cooper,A. and Littlechild,J.A. (1999) Site-directed mutagenesis of proline 204 in the 'hinge' region of yeast phosphoglycerate kinase. Eur. J. Biochem., 259, 939-945.