메뉴 건너뛰기




Volumn 315, Issue 2, 2003, Pages 415-424

Functional analysis of the cloverleaf-like structure in the 3′ untranslated region of bamboo mosaic potexvirus RNA revealed dual roles in viral RNA replication and long distance movement

Author keywords

Bamboo mosaic potexvirus; Helicase like domain; Long distance movement; RNA replication

Indexed keywords

COAT PROTEIN; VIRUS RNA;

EID: 0142154184     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0042-6822(03)00560-9     Document Type: Article
Times cited : (19)

References (42)
  • 1
    • 0025315854 scopus 로고
    • Prediction of RNA secondary structure, including psedoknotting, by computer simulation
    • Abrahams J.P., Berg M.V.D., Batengurg F.H.D., Pleij C.W.A. Prediction of RNA secondary structure, including psedoknotting, by computer simulation. Nucleic Acids Res. 18:1990;3035-3044.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3035-3044
    • Abrahams, J.P.1    Berg, M.V.D.2    Batengurg, F.H.D.3    Pleij, C.W.A.4
  • 2
    • 0345215184 scopus 로고    scopus 로고
    • A single conserved amino acid in the coat protein gene of pea seed-borne mosaic potyvirus modulates the ability of the virus to move systemically in Chenopodium quinoa
    • Andersen K., Johansen I.E. A single conserved amino acid in the coat protein gene of pea seed-borne mosaic potyvirus modulates the ability of the virus to move systemically in Chenopodium quinoa. Virology. 241:1998;304-311.
    • (1998) Virology , vol.241 , pp. 304-311
    • Andersen, K.1    Johansen, I.E.2
  • 3
    • 0023756753 scopus 로고
    • A sequence motif in many polymerases
    • Argos P. A sequence motif in many polymerases. Nucleic Acids Res. 16:1988;9909-9916.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 9909-9916
    • Argos, P.1
  • 4
    • 0025769405 scopus 로고
    • Triple gene block proteins of white clover mosaic potexvirus are required for transport
    • Beck D.L., Guilford P.J., Voot D.M., Andersen M.T., Forster R.L.S. Triple gene block proteins of white clover mosaic potexvirus are required for transport. Virology. 183:1991;695-702.
    • (1991) Virology , vol.183 , pp. 695-702
    • Beck, D.L.1    Guilford, P.J.2    Voot, D.M.3    Andersen, M.T.4    Forster, R.L.S.5
  • 5
    • 0033045209 scopus 로고    scopus 로고
    • Structural and functional analysis of the 3′ untranslated region of bamboo mosaic potexvirus genomic RNA
    • Cheng C.-P., Tsai C.-H. Structural and functional analysis of the 3′ untranslated region of bamboo mosaic potexvirus genomic RNA. J. Mol. Biol. 288:1999;555-565.
    • (1999) J. Mol. Biol. , vol.288 , pp. 555-565
    • Cheng, C.-P.1    Tsai, C.-H.2
  • 6
    • 0037176954 scopus 로고    scopus 로고
    • Specificity analysis of the conserved hexanucleotides for the replication of bamboo mosaic potexvirus RNA
    • Chiu W.-W., Hsu Y.-H., Tasi C.-H. Specificity analysis of the conserved hexanucleotides for the replication of bamboo mosaic potexvirus RNA. Nucleic. Acids Res. 83:2002;159-167.
    • (2002) Nucleic. Acids Res. , vol.83 , pp. 159-167
    • Chiu, W.-W.1    Hsu, Y.-H.2    Tasi, C.-H.3
  • 7
    • 0020584914 scopus 로고
    • H protein, a minor protein of TMV virions, contains sequences of the viral coat protein
    • Collmer C.W., Vogt V.M., Zaitlin M. H protein, a minor protein of TMV virions, contains sequences of the viral coat protein. Virology. 126:1983;429-448.
    • (1983) Virology , vol.126 , pp. 429-448
    • Collmer, C.W.1    Vogt, V.M.2    Zaitlin, M.3
  • 8
    • 0020532253 scopus 로고
    • The H protein isolated from tobacco mosaic virus reassociates with virions reconstituted in vitro
    • Collmer C.W., Zaitlin M. The H protein isolated from tobacco mosaic virus reassociates with virions reconstituted in vitro. Virology. 126:1983;449-458.
    • (1983) Virology , vol.126 , pp. 449-458
    • Collmer, C.W.1    Zaitlin, M.2
  • 9
    • 0026643735 scopus 로고
    • Ribosomal frameshifting efficiency and gag/gag-pol ratio are critical for yeast M1 double-stranded RNA virus propagation
    • Dinman J.D., Wickner R.B. Ribosomal frameshifting efficiency and gag/gag-pol ratio are critical for yeast M1 double-stranded RNA virus propagation. J. Virol. 66:1992;3669-3676.
    • (1992) J. Virol. , vol.66 , pp. 3669-3676
    • Dinman, J.D.1    Wickner, R.B.2
  • 10
    • 0028895609 scopus 로고
    • Capsid protein determinants involved in cell-to-cell and long distance movement of tobacco etch potyvirus
    • Dolja V.V., Haldeman-Cahill R., Montgomery A.E., Vandenbosch K.A., Carrington J.C. Capsid protein determinants involved in cell-to-cell and long distance movement of tobacco etch potyvirus. Virology. 206:1995;1007-1016.
    • (1995) Virology , vol.206 , pp. 1007-1016
    • Dolja, V.V.1    Haldeman-Cahill, R.2    Montgomery, A.E.3    Vandenbosch, K.A.4    Carrington, J.C.5
  • 11
    • 0024961845 scopus 로고
    • Replication in vivo of mutant brome masaic virus RNA defective in amimoacylation
    • Dreher T.W., Rao A.L.N., Hall T.C. Replication in vivo of mutant brome masaic virus RNA defective in amimoacylation. J. Mol. Biol. 206:1989;425-438.
    • (1989) J. Mol. Biol. , vol.206 , pp. 425-438
    • Dreher, T.W.1    Rao, A.L.N.2    Hall, T.C.3
  • 12
    • 0026787504 scopus 로고
    • Specific valylation of turnip yellow mosaic virus RNA by wheat germ valyl-tRNA synthetase determined by three anticodon loop nucleotides
    • Dreher T.W., Tsai C.-H., Florentz C., Giege R. Specific valylation of turnip yellow mosaic virus RNA by wheat germ valyl-tRNA synthetase determined by three anticodon loop nucleotides. Biochemistry. 31:1992;9183-9189.
    • (1992) Biochemistry , vol.31 , pp. 9183-9189
    • Dreher, T.W.1    Tsai, C.-H.2    Florentz, C.3    Giege, R.4
  • 13
    • 0032695133 scopus 로고    scopus 로고
    • Functions of the 3′-untranslated regions of positive strand RNA viral genomes
    • Dreher T.W. Functions of the 3′-untranslated regions of positive strand RNA viral genomes. Annu. Rev. Phytopathol. 37:1999;151-174.
    • (1999) Annu. Rev. Phytopathol. , vol.37 , pp. 151-174
    • Dreher, T.W.1
  • 14
    • 0024041480 scopus 로고    scopus 로고
    • Tobacco mosaic virus particles contain ubiquitinated coat protein subunits
    • Dunigan D.D., Dietzgen R.G., Schoelz J.E., Zaitlin M. Tobacco mosaic virus particles contain ubiquitinated coat protein subunits. Virology. 165:1998;310-312.
    • (1998) Virology , vol.165 , pp. 310-312
    • Dunigan, D.D.1    Dietzgen, R.G.2    Schoelz, J.E.3    Zaitlin, M.4
  • 15
    • 0024462161 scopus 로고
    • Viral proteins containing the purine NTP-binding sequence pattern
    • Gorbalenya A.E., Koonin E.V. Viral proteins containing the purine NTP-binding sequence pattern. Nucleic Acids Res. 17:1989;8413-8440.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 8413-8440
    • Gorbalenya, A.E.1    Koonin, E.V.2
  • 16
    • 0027959741 scopus 로고
    • Interaction of poliovirus polypeptide 3CDpro with the 5′ and 3′ termini of the poliovirus genome. Identification of viral and cellular cofactors needed for efficient binding
    • Harris K.S., Xiang W., Alexander L., Lane W.S., Paul A.V., Wimmer E. Interaction of poliovirus polypeptide 3CDpro with the 5′ and 3′ termini of the poliovirus genome. Identification of viral and cellular cofactors needed for efficient binding. J. Biol. Chem. 269:1994;27004-27014.
    • (1994) J. Biol. Chem. , vol.269 , pp. 27004-27014
    • Harris, K.S.1    Xiang, W.2    Alexander, L.3    Lane, W.S.4    Paul, A.V.5    Wimmer, E.6
  • 17
    • 0023138141 scopus 로고
    • Host factor-induced template modification during synthesis of poliovirus RNA in vitro
    • Hey T.D., Richards O.C., Ehrenfeld E. Host factor-induced template modification during synthesis of poliovirus RNA in vitro. J. Virol. 61:1987;802-811.
    • (1987) J. Virol. , vol.61 , pp. 802-811
    • Hey, T.D.1    Richards, O.C.2    Ehrenfeld, E.3
  • 18
    • 0024278568 scopus 로고
    • A new superfamily of replicative proteins
    • Hodgman T.C. A new superfamily of replicative proteins. Nature. 333:1988;22-23.
    • (1988) Nature , vol.333 , pp. 22-23
    • Hodgman, T.C.1
  • 19
    • 0031765432 scopus 로고    scopus 로고
    • Differential interactions of bamboo mosaic potexvirus satellite RNAs, helper virus, and host plants
    • Hsu Y.-H., Lee Y.-S., Liu J.-S., Lin N.-S. Differential interactions of bamboo mosaic potexvirus satellite RNAs, helper virus, and host plants. Mol. Plant Microbe Interact. 11:1998;1207-1213.
    • (1998) Mol. Plant Microbe Interact. , vol.11 , pp. 1207-1213
    • Hsu, Y.-H.1    Lee, Y.-S.2    Liu, J.-S.3    Lin, N.-S.4
  • 20
    • 0034745981 scopus 로고    scopus 로고
    • Sequences at the 3′ untranslated region of the bamboo mosaic potexvirus RNA interacted with the viral RNA-dependent RNA polymerase
    • Huang C.-Y., Huang Y.-L., Meng M., Hsu Y.-H., Tsai C.-H. Sequences at the 3′ untranslated region of the bamboo mosaic potexvirus RNA interacted with the viral RNA-dependent RNA polymerase. J. Virol. 75:2001;2818-2824.
    • (2001) J. Virol. , vol.75 , pp. 2818-2824
    • Huang, C.-Y.1    Huang, Y.-L.2    Meng, M.3    Hsu, Y.-H.4    Tsai, C.-H.5
  • 21
    • 0032212437 scopus 로고    scopus 로고
    • Evolution of bamboo mosaic virus in a nonsystemic host results in mutations in the helicase-like domain that cause reduced RNA accumulation
    • Huang C.-Y., Tsai C.-H. Evolution of bamboo mosaic virus in a nonsystemic host results in mutations in the helicase-like domain that cause reduced RNA accumulation. Virus Res. 58:1998;127-136.
    • (1998) Virus Res. , vol.58 , pp. 127-136
    • Huang, C.-Y.1    Tsai, C.-H.2
  • 22
    • 0025743809 scopus 로고
    • The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses
    • Koonin E.V. The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. J. Gen. Virol. 72:1991;2197-2206.
    • (1991) J. Gen. Virol. , vol.72 , pp. 2197-2206
    • Koonin, E.V.1
  • 24
    • 0031775018 scopus 로고    scopus 로고
    • Identification and characterization of the Escherichia coli-expressed RNA dependent RNA polymerase of bamboo mosaic virus
    • Li Y.-I., Cheng Y.-M., Huang Y.-L., Tsai C.-H., Hsu Y.-H., Meng M. Identification and characterization of the Escherichia coli-expressed RNA dependent RNA polymerase of bamboo mosaic virus. J. Virol. 72:1998;10093-10099.
    • (1998) J. Virol. , vol.72 , pp. 10093-10099
    • Li, Y.-I.1    Cheng, Y.-M.2    Huang, Y.-L.3    Tsai, C.-H.4    Hsu, Y.-H.5    Meng, M.6
  • 25
    • 0035167111 scopus 로고    scopus 로고
    • Characterization of the AdoMet-dependent guanylyltransferase activity that is associated with the N terminus of bamboo mosaic virus replicase
    • Li Y.-I., Chen Y.J., Hsu Y.H., Meng M. Characterization of the AdoMet-dependent guanylyltransferase activity that is associated with the N terminus of bamboo mosaic virus replicase. J. Virol. 75:2001;782-788.
    • (2001) J. Virol. , vol.75 , pp. 782-788
    • Li, Y.-I.1    Chen, Y.J.2    Hsu, Y.H.3    Meng, M.4
  • 26
    • 0035198148 scopus 로고    scopus 로고
    • The helicase-like domain of plant potexvirus replicase participates in formation of RNA 5′ cap structure by exhibiting RNA 5′- triphosphatase activity
    • Li Y.-I., Shih T.-W., Hsu Y.-H., Han Y.-T., Huang Y.-L., Meng M. The helicase-like domain of plant potexvirus replicase participates in formation of RNA 5′ cap structure by exhibiting RNA 5′-triphosphatase activity. J. Virol. 75:2001;12114-12120.
    • (2001) J. Virol. , vol.75 , pp. 12114-12120
    • Li, Y.-I.1    Shih, T.-W.2    Hsu, Y.-H.3    Han, Y.-T.4    Huang, Y.-L.5    Meng, M.6
  • 27
    • 0001274291 scopus 로고
    • Partial purification and some properties of bamboo mosaic virus
    • Lin M.T., Kitajima E.W., Cupertino F.P., Costa C.L. Partial purification and some properties of bamboo mosaic virus. Phytopathology. 67:1977;1439-1443.
    • (1977) Phytopathology , vol.67 , pp. 1439-1443
    • Lin, M.T.1    Kitajima, E.W.2    Cupertino, F.P.3    Costa, C.L.4
  • 30
    • 0027315727 scopus 로고
    • RNA recognition: A family matter
    • Mattij I.W. RNA recognition a family matter . Cell. 73:1993;837-838.
    • (1993) Cell , vol.73 , pp. 837-838
    • Mattij, I.W.1
  • 31
    • 0031060472 scopus 로고    scopus 로고
    • Kissing of two predominant hairpin loops in the coxsackie B virus 3′ untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis
    • Melchers W.J.G., Henderop J.G.J., Slot H.J.B., Pleij C.W.A., Pilipenko E.V., Agol V.I., Galama J.M.D. Kissing of two predominant hairpin loops in the coxsackie B virus 3′ untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis. J. Virol. 71:1997;686-696.
    • (1997) J. Virol. , vol.71 , pp. 686-696
    • Melchers, W.J.G.1    Henderop, J.G.J.2    Slot, H.J.B.3    Pleij, C.W.A.4    Pilipenko, E.V.5    Agol, V.I.6    Galama, J.M.D.7
  • 32
    • 0035041545 scopus 로고    scopus 로고
    • The C terminus of brome mosaic virus coat protein controls viral cell-to-cell and long-distance movement
    • Okinaka Y., Mise K., Suzuki E., Okuno T., Furusawa I. The C terminus of brome mosaic virus coat protein controls viral cell-to-cell and long-distance movement. J. Virol. 75:2001;5385-5390.
    • (2001) J. Virol. , vol.75 , pp. 5385-5390
    • Okinaka, Y.1    Mise, K.2    Suzuki, E.3    Okuno, T.4    Furusawa, I.5
  • 33
    • 0032977609 scopus 로고
    • Effect of C-terminal deletions in the movement protein of cowpea chlorotic mottle virus on cell-to-cell and long-distance movement
    • Osman F., Schmitz I., Rao A.L. Effect of C-terminal deletions in the movement protein of cowpea chlorotic mottle virus on cell-to-cell and long-distance movement. J. Gen. Virol. 71:1990;1357-1365.
    • (1990) J. Gen. Virol. , vol.71 , pp. 1357-1365
    • Osman, F.1    Schmitz, I.2    Rao, A.L.3
  • 34
    • 0026572608 scopus 로고
    • Towards identification of cis-acting elements involved in the replication of enterovirus RNAs: A proposal for the existance of tRNA-like terminal structures
    • Pilipenko E.V., Maslova S.V., Sinyakov A.N., Agol V.I. Towards identification of cis-acting elements involved in the replication of enterovirus RNAs a proposal for the existance of tRNA-like terminal structures . Nucleic Acids Res. 20:1992;1739-1745.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1739-1745
    • Pilipenko, E.V.1    Maslova, S.V.2    Sinyakov, A.N.3    Agol, V.I.4
  • 35
    • 0026793857 scopus 로고
    • Conservation of the putative methyltransferase domain: A hallmark of the Sindbis-like a supergroup of positive-strand RNA viruses
    • Rozanov M.N., Koonin E.V., Gorbalenya A.E. Conservation of the putative methyltransferase domain a hallmark of the Sindbis-like a supergroup of positive-strand RNA viruses . J. Gen. Virol. 73:1992;2129-2134.
    • (1992) J. Gen. Virol. , vol.73 , pp. 2129-2134
    • Rozanov, M.N.1    Koonin, E.V.2    Gorbalenya, A.E.3
  • 36
    • 0025279669 scopus 로고
    • Long-distance movement and viral assembly of tobacco mosaic virus mutants
    • Saito T., Yamanaka K., Okada Y. Long-distance movement and viral assembly of tobacco mosaic virus mutants. Virology. 176:1990;329-336.
    • (1990) Virology , vol.176 , pp. 329-336
    • Saito, T.1    Yamanaka, K.2    Okada, Y.3
  • 37
    • 0025325983 scopus 로고
    • The "megaprimer" method of site directed mutagenesis
    • Sarkar G., Sommer S.S. The "megaprimer" method of site directed mutagenesis. Biotechnique. 8:1990;404-407.
    • (1990) Biotechnique , vol.8 , pp. 404-407
    • Sarkar, G.1    Sommer, S.S.2
  • 38
    • 0033515026 scopus 로고    scopus 로고
    • Expression of alfalfa mosaic virus coat protein in tobacco mosaic virus (TMV) deficient in the production of its native coat protein supports long-distance movement of a chimeric TMV
    • Spitsin S., Steplewski K., Fleysh N., Belanger H., Mikheeva T., Shivprasad S., Dawson W., Koprowski H., Yusibov V. Expression of alfalfa mosaic virus coat protein in tobacco mosaic virus (TMV) deficient in the production of its native coat protein supports long-distance movement of a chimeric TMV. Proc. Natl. Acad. Sci. USA. 96:1999;2549-2553.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 2549-2553
    • Spitsin, S.1    Steplewski, K.2    Fleysh, N.3    Belanger, H.4    Mikheeva, T.5    Shivprasad, S.6    Dawson, W.7    Koprowski, H.8    Yusibov, V.9
  • 39
    • 0026058679 scopus 로고
    • Turnip yellow mosaic virus RNAs with anticodon loop substitutions that result in decreased valylation fail to replicate efficiently
    • Tsai C.-H., Dreher T.W. Turnip yellow mosaic virus RNAs with anticodon loop substitutions that result in decreased valylation fail to replicate efficiently. J. Virol. 65:1991;3060-3067.
    • (1991) J. Virol. , vol.65 , pp. 3060-3067
    • Tsai, C.-H.1    Dreher, T.W.2
  • 40
    • 0033009763 scopus 로고    scopus 로고
    • Sufficient length of a poly (A) tail for the formation of a potential pseudoknot is required for an efficient replication of bamboo mosaic potexvirus RNA
    • Tsai C.-H., Cheng C.-P., Peng C.-W., Lin B.-Y., Lin N.-S., Hsu Y.-H. Sufficient length of a poly (A) tail for the formation of a potential pseudoknot is required for an efficient replication of bamboo mosaic potexvirus RNA. J. Virol. 73:1999;2703-2709.
    • (1999) J. Virol. , vol.73 , pp. 2703-2709
    • Tsai, C.-H.1    Cheng, C.-P.2    Peng, C.-W.3    Lin, B.-Y.4    Lin, N.-S.5    Hsu, Y.-H.6
  • 41
    • 0031007975 scopus 로고    scopus 로고
    • Nucleotide sequence and phylogenetic analysis of a bamboo mosaic potexvirus isolate from common bamboo (Bambusa vulgaris McClure)
    • Yang C.-C., Liu J.-S., Lin C.-P., Lin N.-S. Nucleotide sequence and phylogenetic analysis of a bamboo mosaic potexvirus isolate from common bamboo (Bambusa vulgaris McClure). Botanical Bull. Acad. Sinica. 28:1997;77-84.
    • (1997) Botanical Bull. Acad. Sinica , vol.28 , pp. 77-84
    • Yang, C.-C.1    Liu, J.-S.2    Lin, C.-P.3    Lin, N.-S.4
  • 42
    • 0002287019 scopus 로고    scopus 로고
    • Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
    • J. Barciszewski, & B.F.C. Clark. Dordrecht/Norwell, MA: Kluwer Academic
    • Zuker M., Mathews D.H., Turner D.H. Algorithms and thermodynamics for RNA secondary structure prediction a practical guide . Barciszewski J., Clark B.F.C. RNA Biochemistry and Biotechnology, NATO ASI Series. 1999;11-43 Kluwer Academic, Dordrecht/Norwell, MA.
    • (1999) RNA Biochemistry and Biotechnology, NATO ASI Series , pp. 11-43
    • Zuker, M.1    Mathews, D.H.2    Turner, D.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.