A novel fluorescent pH probe for expression in plants

Plant Methods

Volumn 2, Issue 1, 2006, Pages

  Schulte, Alexander ^a   Lorenzen, Inken ^a   Böttcher, Markus ^a,b   Plieth, Christoph ^a  

^a UNIVERSITY OF KIEL   (Germany)

^b UNIVERSITY OF LÜBECK   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 33846907480     PISSN: None     EISSN: 17464811     Source Type: Journal    
DOI: 10.1186/1746-4811-2-7     Document Type: Article

References (66)

1. Pozzan T. Calcium turns turquoise into gold. Nature 1997, 388:834-835. 9278042, 10.1038/42151.
2. Zhang J, Campbell RE, Ting AY, Tsien RY. Creating new fluorescent probes for cell biology. Nature Reviews Molecular Cell Biology 2002, 3:906-918. 10.1038/nrm976, 12461557.
3. Haseloff J, Siemering KR, Prasher DC, Hodge S. Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly. Proceedings of the National Academy of Science USA 1997, 94:2122-2127.
4. Davis SJ, Vierstra RD. Soluble, high fluorescent variants of green fluorescent protein (GFP) for use in higher plants. Plant Molecular Biology 1998, 36:521-528. 10.1023/A:1005991617182, 9484447.
5. Runions J, Brach T, Kühner S, Hawes C. Photoactivation of GFP reveals protein dynamics within the endoplasmic reticulum membrane. Journal of Experimental Botany 2005, 57:43-50. 10.1093/jxb/eri289, 16207749.
6. Kwok EY, Hanson MR. GFP-labelled Rubisco and aspartate aminotransferase are present in plastid stromules and traffic between plastids. Journal of Experimental Botany 2004, 55:595-604. 10.1093/jxb/erh062, 14754918.
7. Kwok EY, Hanson MR. In vivo analysis of interactions between GFP-labelled microfilaments and plastid stromules. BMC Plant Biology 2004, 4:1-9. 343276, 15005814, 10.1186/1471-2229-4-2.
8. Flückiger R, Caroli de M, Piro G, Dalessandro G, Neuhaus J-M, Di Sansebastiano G-P. Vacuolar system distribution in Arabidopsis tissues, visualized using GFP fusion proteins. Journal of Experimental Botany 2003, 54:1577-1584. 10.1093/jxb/erg160, 12730271.
9. Brandizzi F, Fricker M, Hawes C. A greener world: the revolution in plant bioimaging. Nature Reviews - Molecular Cell Biology 2002, 3:520-530.
10. Hanson MR, Köhler RH. GFP imaging: methodology and application to investigate cellular compartmentation in plants. Journal of Experimental Botany 2001, 52:529-539. 10.1093/jexbot/52.356.529, 11373302.
11. Logan DC, Leaver CJ. Mitochondria-targeted GFP highlights the heterogeneity of mitochondrial shape, size and movement within living plant cells. Journal of Experimental Botany 2000, 51:865-871. 10.1093/jexbot/51.346.865, 10948212.
12. Neuhaus J-M. GFP as a marker for vacuoles in plants. Annual Plant Reviews Vacuolar compartments 2000, 5:254-269. Sheffield Academic Press, Robinson DG.
13. Tee CS, Marziah M, Tan CS, Abdullah MP. Evaluation of different promoters driving the GFP reporter gene and selected target tissues for particle bombardment of Dendrobium sonia. Plant Cell Reports 2003, 21:452-458.
14. Fricker M, Runions J, Moore I. Quantitative fluorescence microscopy: From art to science. Annual Reviews of Plant Biology 2006, 57:79-107.
15. Chiesa A, Rapizzi E, Tosello V, Pinton P, Virgilio de M, Fogarty KE, Rizzuto R. Recombinant aequorin and green fluorescent protein as valuable tools in the study of cell signalling. Biochemical Journal 2001, 355:1-12. 1221705, 11256942, 10.1042/0264-6021:3550001.
16. Xu Y, Piston DW, Johnson CH. A bioluminescence resonance energy transfer (BRET) system: Application to interacting circadian clock proteins. Proceedings of the National Academy of Sciences USA 1999, 96:151-156.
17. Fasano JM, Swanson SJ, Blancaflor EB, Dowd PE, Kao T, Gilroy S. Changes in root cap pH are required for the gravity response of the Arabidopsis root. Plant Cell 2001, 13:907-921. 135544, 11283344, 10.1105/tpc.13.4.907.
18. Miyawaki A, Llopis J, Heim R, McCaffery JM, Adams JA, Ikura M, Tsien RY. Fluorescent indicators for calcium based on green fluorescent protein and calmodulin. Nature 1997, 388:882-887. 10.1038/42264, 9278050.
19. Miyawaki A, Griesbeck O, Heim R, Tsien RY. Dynamic and quantitative Ca2+ measurements using improved cameleons. Proceedings of the National Academy of Science USA 1999, 96:2135-2140.
20. Allen GJ, Kwak JM, Chu SP, Llopis J, Tsien RY, Harper JF, Schroeder JI. Cameleon calcium indicator reports cytoplasmic calcium dynamics in Arabidopsis guard cells. Plant Journal 1999, 19:735-747. 10.1046/j.1365-313x.1999.00574.x, 10571859.
21. Gao D, Trewavas AJT, Knight MR, Sattelmacher B, Plieth C. Self-reporting Arabidopsis thaliana expressing pH- and [Ca 2+]-indicators unveil ion dynamics in the cytoplasm and in the apoplast under abiotic stress. Plant Physiology 2004, 134:898-908. 389913, 15020753, 10.1104/pp.103.032508.
22. Kuner T, Augustine GJ. A genetically encoded ratiometric indicator for chloride: Capturing chloride transients in culture hippocampal neurons. Neuron 2000, 27:447-459. 10.1016/S0896-6273(00)00056-8, 11055428.
23. Lorenzen I, Aberle T, Plieth C. Salt stress - induced chloride flux: a study using transgenic Arabidopsis expressing a fluorescent anion probe. Plant Journal 2004, 38:539-544. 10.1111/j.0960-7412.2004.02053.x, 15086798.
24. Kiegle E, Moore CA, Haseloff J, Tester J, Knight MR. Cell-type-specific calcium responses to drought salt and cold in Arabidopsis roots. Plant Journal 2000, 23:267-278. 10.1046/j.1365-313x.2000.00786.x, 10929120.
25. Miesenböck G, de Angelis DA, Rothman JE. Visualizing secretion and synaptic transmission with pH-sensitive green fluorescent protein. Nature 1998, 394:192-195. 10.1038/28190, 9671304.
26. Plieth C, Sattelmacher B, Trewavas AJ, Hansen UP, Knight MR. Engineering plants expressing calcium and pH indicators in the cytoplasm and the apoplast. Plant Nutrition - Food security and sustainability of agro-ecosystems through basic and applied research (Proceedings of XIV International Plant Nutrition Colloquium, Hannover, Germany, 2001) - Developments in Plant and Soil Sciences - Series 2001, 92:252-253. Kluwer Academic Publishers Dordrecht Netherlands, Horst.
27. Moseyko N, Feldman LJ. Expression of pH-sensitive green fluorescent protein in Arabidopsis thaliana. Plant, Cell and Environment 2001, 24:557-563.
28. Shkrob MA, Yanushevich YG, Chudakov DM, Gurskaya NG, Labas YA, Poponov SY, Mudrik NN, Lukyanov S, Lukyanov KA. Far-red fluorescent proteins evolved from a blue chromoprotein from Actinia equina. Biochemical Journal 2005, 392:649-654. 10.1042/BJ20051314, 16164420.
29. Shagin DA, Barsova EV, Yanushevich YG, Fradkov AF, Lukyanov KA, Labas YA, Semenova TN, Ugalde JA, Meyers A, Nunez JM, Widder EA, Lukyanov SA, Matz MV. GFP-like proteins as ubiquitous metazoan superfamily: Evolution of functional features and structural complexes. Molecular Biology and Evolution 2004, 21:841-850.
30. Shaner NC, Campbell RE, Steinbach PA, Giepmans BNG, Palmer AE, Tsien RY. Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. Nature Biotechnology 2004, 22:1567-1572. 10.1038/nbt1037, 15558047.
31. Wenck A, Pugieux C, Turner M, Dunn M, Stacy C, Tiozzo A, Dunder E, van Grinsven E, Khan R, Sigareva M, Wang WC, Reed J, Drayton P, Oliver D, Trafford H, Legris G, Rushton H, Tayab S, Launis K, Chang Y-F, Chen D-F-, Melchers L. Reef-coral proteins as visual, nondestructive reporters for plant transformation. Plant Cell Reports 2003, 22:244-251. 10.1007/s00299-003-0690-x, 12942310.
32. Mazel CH, Lesser MP, Gorbunov MY, Barry TM, Farrell JH, Wyman KD, KFalkowski PG. Green fluorescent proteins in caribbean corals. Limnology and Oceanography 2003, 48:402-411.
33. Papina M, Sakihama Y, Bena C, Woesik van R, Yamasaki H. Seapration of highly fluorescent proteins by SDS-PAGE in Acropodiae corals. Comparative Biochemistry and Physiology Part B 2002, 131:767-774.
34. Peelle B, Gururaja TL. Characterization and Use of Green Fluorescent Proteins from Renilla mulleri and Ptilosarcus guernyi for the Human Cell Display of Functional Peptides. Journal of Protein Chemistry 2001, 20:507-519. 10.1023/A:1012514715338, 11760126.
35. Bryan BJ, Szent-Gyorgyi C. Luciferases, fluorescent proteins, nucleic acids encoding the luciferasses and fluorescent proteins and the use thereof in diagnostics, high throughput screening and novelty items. WIPO Patent, C12N 9/00 1999,
36. Popov EG, Gavrilov IY, Pozin EYA, Gabbasov ZA. Multiwavelength method for measuring concentration of free cytosolic calcium using the fluorescent probe indo-1. Archives of Biochemistry and Biophysics 1988, 261:91-96.
37. Tsien RY, Poenie M. Fluorescence ratio imaging: a new window into intracellular ionic signaling. TIBS 1986, 11:450-455.
38. Bright GR, Fisher GW, Rogowska J, Taylor DL. Fluorescence ratio imaging microscopy. Methods in Cell Biology 1989, 30:157-192.
39. Kneen M, Farinas J, Li Y, Verkman AS. Green fluorescent protein as a non invasive intracellular pH indicator. Biophysical Journal 1998, 74:1591-1599. 1299504, 9512054.
40. Hanson GT, McAnaney TB, Park ES, Rendell MEP, Yarbrough DY, Chu S, Boxer SG, Montrose MH, Remington SJ. Green fluorescent protein variants as ratiometric dual emission pH sensors. 1. Structural characterization and preliminary application. Biochemistry 2002, 41:15477-15488. 10.1021/bi026609p, 12501176.
41. Felle HH. The apoplast pH of the Zea mays root cortex as measured with pH-sensitive microelectrodes: aspects of regulation. Journal of Experimental Botany 1998, 49:987-995.
42. Grignon C, Sentenac H. pH and ionic conditions in the apoplast. Annual Review of Plant Physiology and Plant Molecular Biology 1991, 42:103-128.
43. Griesbeck O, Baird GS, Campbell RE, Zacharias DA, Tsien RY. Reducing the environmental sensitivity of yellow fluorescent protein. The Journal of Biological Chemistry 2001, 276:29188-29194. 10.1074/jbc.M102815200, 11387331.
44. Fricker MD, Parsons A, Tlalka M, Blancaflor E, Gilroy S, Meyer A, Plieth C. Fluorescent probes for living plant cells. Plant Cell Biology: A Practical Approach 2001, 35-84. Oxford University Press Oxford, Hawes C, Satiai-Jeunemaitre B, 2.
45. Plieth C, Sattelmacher B, Hansen U-P. Cytoplasmic Ca2+-H+-exchange buffers in green algae. Protoplasma 1997, 198:107-124. and Vol. 199: 223 (correction).
46. Felle HH. pH regulation in anoxic plants. Annals of Botany 2005, 96:519-532. 10.1093/aob/mci207, 16024558.
47. Felle HH. pH: Signal and messenger in plant cells. Plant Biology 2001, 3:577-591.
48. Felle HH. Control of cytoplasmic pH under anoxic conditions and its implication for plasma membrane proton transport in Medicago sativa root hairs. Journal of Experimental Botany 1996, 47:967-973.
49. Ratcliffe RG. In vivo NMR studies of the metabolic response of plant tissues to anoxia. Annals of Botany 1997, 79(Supplement A):39-48.
50. Gout E, Boisson A-M, Aubert S, Douce R, Bligny R. Origin of the cytoplasmic pH changes during anaerobic stress in higher plant cells. Carbon-13 and phosphorous-31 nuclear magnetic resonance studies. Plant Physiology 2001, 125:912-925. 64892, 11161048, 10.1104/pp.125.2.912.
51. Flowers TJ. Improving crop salt tolerance. Journal of Experimental Botany 2004, 55:307-319. 10.1093/jxb/erh003, 14718494.
52. Apse MP, Blumwald E. Engineering salt tolerance in plants. Current Opinion in Biotechnology 2002, 13:146-150. 10.1016/S0958-1669(02)00298-7, 11950567.
53. Zhang H-X, Hodson JN, Williams JP, Blumwald E. Engineering salt-tolerant Brassica plants: Characterization of yield and seed oil quality in transgenic plants with increased vacuolar sodium accumulation. Proceedings of the National Academy of Science USA 2001, 98:12832-12836.
54. Zhang H-X, Blumwald E. Transgenic salt-tolerant tomato plants accumulate salt in foliage but not in fruit. Nature Biotechnology 2001, 19:765-768. 10.1038/90824, 11479571.
55. Spickett CM, Smirnoff N, Ratcliffe RG. An in vivo nuclear magnetic resonance investigation of ion transport in maize (Zea mays) and Spartina anglica roots during exposure to high salt concentrations. Plant Physiology 1993, 102:629-638. 158822, 12231853.
56. Felle HH. The H+/Cl- symporter in root hair cells of Sinapis alba. Plant Physiology 1994, 106:1131-1136. 159640, 12232395.
57. Nakamura Y, Ogawa T, Kasamo K, Sakata M, Ohta E. Changes in cytoplasmic and vacuolar pH in intact cells of mung bean root-tips under high-NaCl stress at different external concentrations of Ca2+ ions. Plant and Cell Physiology 1992, 33:849-85.
58. Katsuhara M, Kuchitsu K, Takeshige K, Tazawa M. Salt stress-induced cytoplasmic acidification and vacuolar alkalization in Nitellopsis obtusa cells. Plant Physiology 1989, 90:1102-1107. 1061850, 16666858.
59. Fan TWM, Higashi RM, Norly J, Epstein E. In vivo 23Na and 31P NMR measurement of a tonoplast Na+/H+ exchange process and its characteristics in two barley cultivars. Proceedings of the National Academy of Sciences USA 1989, 86:9856-9860.
60. Be-Hayyim G, Navon G. Phosphorous-31 NMR studies of the wild-type and NaCl-tolerant Citrus cultured cells. Journal of Experimental Botany 1985, 36:1877-1888.
61. Sambrook J, Fritsch EF, Maniatis T. Molecular cloning - a laboratoy manual. 1989, 1-3. Cold Spring Harbor Laboratory Press.
62. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K. Short protocols in molecular biology. 1999, Wiley New York.
63. Gleave AP. A versatile binary vector system with a T-DNA organisational structure conducive to efficient integration of cloned DNA into the plant genome. Plant Molecular Biology 1992, 20:1203-1207. 10.1007/BF00028910, 1463857.
64. Clough SJ, Bent AF. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant Journal 1998, 16:735-743. 10.1046/j.1365-313x.1998.00343.x, 10069079.
65. Plieth C, Trewavas AJ. Reorientation of seedlings in the earth's gravitational field induces cytosolic calcium transients. Plant Physiology 2002, 129:786-796. 161701, 12068119, 10.1104/pp.011007.
66. Grynkiewicz G, Poenie M, Tsien RY. A new generation of Ca2+ indicators with greatly improved fluorescence properties. Journal of Biological Chemistry 1985, 260:3440-3450.