Structure of the putative mutarotase YeaD from Salmonella typhimurium: Structural comparison with galactose mutarotases

Acta Crystallographica Section D: Biological Crystallography

Volumn 63, Issue 2, 2007, Pages 197-205

  Chittori, Sagar ^a   Simanshu, Dhirendra K ^a   Savithri, H S ^a   Murthy, M R N ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

Author keywords

Aldose 1 epimerases; Carbohydrates; GalM; Mutarotases; Salmonella typhimurium; Sugar phosphates; YeaD

Indexed keywords

ALDOSE 1 EPIMERASE; ALDOSE 1-EPIMERASE; ARGININE; BACTERIAL PROTEIN; EPIMERASE; GALACTOSE MUTAROTASE; LIGAND; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; COMPARATIVE STUDY; ENZYME ACTIVE SITE; ENZYME SPECIFICITY; ENZYMOLOGY; PROTEIN CONFORMATION; SALMONELLA TYPHIMURIUM; X RAY CRYSTALLOGRAPHY;

ARGININE; BACTERIAL PROTEINS; BINDING SITES; CARBOHYDRATE EPIMERASES; CATALYTIC DOMAIN; CRYSTALLOGRAPHY, X-RAY; LIGANDS; MOLECULAR STRUCTURE; PROTEIN CONFORMATION; SALMONELLA TYPHIMURIUM; SUBSTRATE SPECIFICITY;

SALMONELLA TYPHIMURIUM;

EID: 33846675606     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S090744490604618X     Document Type: Article

References (32)

1. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Nucleic Acids Res. 25, 3389-3402.
2. Assairi, L., Bertrand, T., Ferdinand, J., Slavova-Azmanova, N., Christensen, M., Briozzo, P., Schaeffer, F., Craescu, C. T., Neuhard, J., Barzu, O. & Gilles, A. M. (2004). Protein Sci. 13, 1295-1303.
3. Bailey, J. F., Fishman, P. H., Kusiak, J.W., Mulhern, S. & Pentchev, P.G. (1975). Methods Enzymol. 41, 471-484.
4. Beebe, J. A. & Frey, P. A. (1998). Biochemistry, 37, 14989-14997.
5. Berman, H. M., Battistuz, T., Bhat, T. N., Bluhm, W. F., Bourne, P. E., Burkhardt, K., Feng, Z., Gilliland, G. L., Iype, L., Jain, S., Fagan, P., Marvin, J., Padilla, D., Ravichandran, V., Schneider, B., Thanki, N., Weissig, H., Westbrook, J. D. & Zardecki, C. (2002). Acta Cryst. D58, 899-907.
6. Castro, E. de, Sigrist, C. J., Gattiker, A., Bulliard, V., Langendijk-Genevaux, P. S., Gasteiger, E., Bairoch, A. & Hulo, N. (2006). Nucleic Acids Res. 34, W362-W365.
7. Cohen, G. E. (1997). J. Appl. Cryst. 30, 1160-1161.
8. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
9. DeLano, W. L. (2002). The PyMOL Molecular Graphics System. http://www.pymol.org.
10. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
11. Gouet, P., Robert, X. & Courcelle, E. (2003). Nucleic Acids Res. 31, 3320-3323.
12. Graille, M., Baltaze, J. P., Leulliot, N., Liger, D., Quevillon-Cheruel, S. & van Tilbeurgh, H. (2006). J. Biol Chem. 281, 31075-30185.
13. Holm, L. & Sander, C. (1993). J. Mol. Biol. 233, 123-138.
14. Hucho, F. & Wallenfels, K. (1971). Eur. J. Biochem. 23, 489-496.
15. Hulo, N., Bairoch, A., Bulliard, V., Cerutti, L., De Castro, E., Langendijk-Genevaux, P. S., Pagni, M. & Sigrist, C. J. (2006). Nucleic Acids Res. 34, D227-D230.
16. Hutchinson, E. G. & Thornton, J. M. (1996). Protein Sci. 5, 212-220.
17. Innis, C. A., Shi, J. & Blundell, T. L. (2000). Protein Eng. 13, 839-847.
18. Krissinel, E. V. & Henrick, K. (2005). CompLife 2005, edited by M. R. Berthold, R. Glen, K. Diederichs, O. Kohlbacher & I. Fischer, pp. 67-78. Berlin Heidelberg: Springer-Verlag.
19. Laskowski, R. A., Chistyakov, V. V. & Thornton, J. M. (2005). Nucleic Acids Res. 33, D266-D268.
20. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
21. Lichtarge, O., Bourne, H. R. & Cohen, F. E. (1996). J. Mol. Biol. 257, 342-358.
22. Matthews, B. W. (1968). J. Mol. Biol. 33, 491-497.
23. Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997). Acta Cryst. D53, 240-255.
24. Murzin, A. G., Brenner, S. E., Hubbard, T. & Chothia, C. (1995). J. Mol. Biol. 247, 536-540.
25. Navaza, J. (1994). Acta Cryst. A50, 157-163.
26. Notredame, C., Higgins, D. G. & Heringa, J. (2000). J. Mol. Biol. 302, 205-217.
27. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
28. Shirokane, Y. & Suzuki, M. (1995). FEBS Lett. 367, 177-179.
29. Thoden, J. B. & Holden, H. M. (2002). J. Biol. Chem. 277, 20854-20861.
30. Thoden, J. B., Kim, J., Raushel, F. M. & Holden, H. M. (2002). J. Biol. Chem. 277, 45458-45465.
31. Thoden, J. B., Kim, J., Raushel, F. M. & Holden, H. M. (2003). Protein Sci. 12, 1051-1059.
32. Wurster, B. & Hess, B. (1972). FEBS Lett. 23, 341-344.