-
1
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel, E. and Henrick, K.: Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Cryst. D60 (2004) 2256-2268.
-
(2004)
Acta Cryst.
, vol.D60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
2
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
Chotia, C. and Lesk, A.M.: The relation between the divergence of sequence and structure in proteins. EMBO J. 5 (1986) 823-826.
-
(1986)
EMBO J.
, vol.5
, pp. 823-826
-
-
Chotia, C.1
Lesk, A.M.2
-
3
-
-
0027122748
-
One thousand families for the molecular biologist
-
Chotia, C.-. One thousand families for the molecular biologist. Nature 357 (1992) 543-544.
-
(1992)
Nature
, vol.357
, pp. 543-544
-
-
Chotia, C.1
-
4
-
-
0000338489
-
Comparison of solvent-inaccessible cores of homologous proteins - Definitions useful for protein modelling
-
Hubbard, T.J.P. and Blundell, T.L.: Comparison of solvent-inaccessible cores of homologous proteins - definitions useful for protein modelling. Protein Engng. 1 (1987) 159-171.
-
(1987)
Protein Engng.
, vol.1
, pp. 159-171
-
-
Hubbard, T.J.P.1
Blundell, T.L.2
-
5
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm, L. and Sander, C.: Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233 (1993) 123-138.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
6
-
-
0029948001
-
SSAP: Sequential structure alignment program for protein structure comparison
-
Orengo, C.A. and Taylor, W.R.: SSAP: Sequential Structure Alignment Program for protein structure comparison. Meth. Enzym. 266 (1996) 617-635.
-
(1996)
Meth. Enzym.
, vol.266
, pp. 617-635
-
-
Orengo, C.A.1
Taylor, W.R.2
-
7
-
-
0029921425
-
A surface of minimum metric for the structural comparison of proteins
-
Falicov, A. and Cohen, F.E.: A surface of minimum metric for the structural comparison of proteins. J. Mol. Biol. 258 (1996) 871-892.
-
(1996)
J. Mol. Biol.
, vol.258
, pp. 871-892
-
-
Falicov, A.1
Cohen, F.E.2
-
8
-
-
0030339935
-
Using iterative dynamic programming to obtain accurate pairwise and multiple alignments of protein structures
-
Menlo Park, Calif. AAAI Press
-
Gerstein, M. and Levitt, M.: Using iterative dynamic programming to obtain accurate pairwise and multiple alignments of protein structures. In Proc. of the Fourth Int. Conf. Intell. Syst. Mol. Biol., Menlo Park, Calif.: (1996) AAAI Press, pp. 59-67.
-
(1996)
Proc. of the Fourth Int. Conf. Intell. Syst. Mol. Biol.
, pp. 59-67
-
-
Gerstein, M.1
Levitt, M.2
-
9
-
-
0030628304
-
Hierarchical protein structure superposition using both secondary structure and atomic representations
-
AAAI Press
-
Singh, A.P. and Brutlag, D.L.: Hierarchical protein structure superposition using both secondary structure and atomic representations. In Proc. Int. Conf. Intell. Syst. Mol. Biol. ISMB-97: (1997) AAAI Press, pp. 284-293.
-
(1997)
Proc. Int. Conf. Intell. Syst. Mol. Biol. ISMB-97
, pp. 284-293
-
-
Singh, A.P.1
Brutlag, D.L.2
-
10
-
-
0025744920
-
Detection of common three-dimensional substructures in proteins
-
Vriend, G. and Sander, C.: Detection of common three-dimensional substructures in proteins. Proteins 11 (1991) 52-58.
-
(1991)
Proteins
, vol.11
, pp. 52-58
-
-
Vriend, G.1
Sander, C.2
-
11
-
-
0029061843
-
Comparison of spatial arrangements of secondary structural elements in proteins
-
Mizuguchi, K. and Go, N.: Comparison of spatial arrangements of secondary structural elements in proteins. Protein Engng. 8(4) (1995) 353-362.
-
(1995)
Protein Engng.
, vol.8
, Issue.4
, pp. 353-362
-
-
Mizuguchi, K.1
Go, N.2
-
12
-
-
0025275776
-
Use of techniques derived from graph theory to compare secondary structure motifs in proteins
-
Mitchell, E.M., Artymiuk, P.J., Rice, D.W. and Willett, P.: Use of techniques derived from graph theory to compare secondary structure motifs in proteins. J. Mol. Biol. 212 (1990) 151-166.
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 151-166
-
-
Mitchell, E.M.1
Artymiuk, P.J.2
Rice, D.W.3
Willett, P.4
-
13
-
-
0029796428
-
SARFing the PDB
-
Alexandrov, N.N.: SARFing the PDB. Protein Engng. 9 (1996) 727-732.
-
(1996)
Protein Engng.
, vol.9
, pp. 727-732
-
-
Alexandrov, N.N.1
-
14
-
-
0027511808
-
Identification of tertiary structure resemblance in proteins using a maximal common subgraph isomorphism algorithm
-
Grindley, H.M., Artymiuk, P.J., Rice, D.W. and Willett, P.: Identification of tertiary structure resemblance in proteins using a maximal common subgraph isomorphism algorithm. J. Mol. Biol. 229 (1993) 707-721.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 707-721
-
-
Grindley, H.M.1
Artymiuk, P.J.2
Rice, D.W.3
Willett, P.4
-
15
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov, I.N. and Bourne, P.E.: Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Engng. 11(9) (1998) 739-747.
-
(1998)
Protein Engng.
, vol.11
, Issue.9
, pp. 739-747
-
-
Bourne, P.E.1
-
17
-
-
0030841589
-
Detecting folding motifs and similarities in protein structures
-
Kleywegt, G.J. and Jones, T.A.: Detecting folding motifs and similarities in protein structures. Meth. Enzym. 277 (1997) 525-545.
-
(1997)
Meth. Enzym.
, vol.277
, pp. 525-545
-
-
Kleywegt, G.J.1
Jones, T.A.2
-
18
-
-
0026743174
-
Multiple protein sequence alignment from tertiary structure comparison
-
Russell, R.B. and Barton, G.J.: Multiple protein sequence alignment from tertiary structure comparison. Proteins: Struct. Funct. Genet. 14 (1992) 309-323.
-
(1992)
Proteins: Struct. Funct. Genet.
, vol.14
, pp. 309-323
-
-
Russell, R.B.1
Barton, G.J.2
-
19
-
-
84956971981
-
MultiProt - A multiple protein structural alignment algorithm
-
Springer Verlag
-
Shatsky, M., Nussinov, R. and Wolfson, H.J.: MultiProt - a Multiple Protein Structural Alignment Algorithm. In Lecture Notes in Computer Science: (2002) Springer Verlag, pp. 2452:235-250.
-
(2002)
Lecture Notes in Computer Science
, pp. 2452
-
-
Shatsky, M.1
Nussinov, R.2
Wolfson, H.J.3
-
20
-
-
0142210126
-
Multiple structural alignment by secondary structures: Algorithm and applications
-
Dror O., Benyamini H., Nussinov R. and H. Wolfson: Multiple structural alignment by secondary structures: algorithm and applications. Protein Science 12 (2003) 2492-2507.
-
(2003)
Protein Science
, vol.12
, pp. 2492-2507
-
-
Dror, O.1
Benyamini, H.2
Nussinov, R.3
Wolfson, H.4
-
22
-
-
13444279981
-
Comprehensive evaluation of protein structure alignment methods: Scoring by geometric measures
-
Kolodny, R., Koehl, P. and Levitt, M.: Comprehensive Evaluation of Protein Structure Alignment Methods: Scoring by Geometric Measures. J. Mo. Biol. 346 (2005) 1173-1188.
-
(2005)
J. Mo. Biol.
, vol.346
, pp. 1173-1188
-
-
Kolodny, R.1
Koehl, P.2
Levitt, M.3
-
24
-
-
10844268381
-
The new CCP4 coordinate library as a toolkit for the design of coordinate-related applications in protein crystallography
-
Krissinel, E.B., Winn, M.D., Ballard, C.C., Ashton, A.W., Patel, P., Potterton, E.A., McNicholas, S.J., Cowtan, K.D. and Emsley, P.: The new CCP4 Coordinate Library as a toolkit for the design of coordinate-related applications in protein crystallography. Acta Cryst. D60 (2004) 2250-2255.
-
(2004)
Acta Cryst.
, vol.D60
, pp. 2250-2255
-
-
Krissinel, E.B.1
Winn, M.D.2
Ballard, C.C.3
Ashton, A.W.4
Patel, P.5
Potterton, E.A.6
McNicholas, S.J.7
Cowtan, K.D.8
Emsley, P.9
-
26
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P.J.: MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst. 24 (1991) 946-950.
-
(1991)
J. Appl. Cryst.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
27
-
-
0030815133
-
Raster3D: Photorealistic molecular graphics
-
Merritt, E.A. and Bacon, D.J.: Raster3D: Photorealistic Molecular Graphics. Meth. Enzymol. 277 (1997) 505-524.
-
(1997)
Meth. Enzymol.
, vol.277
, pp. 505-524
-
-
Merritt, E.A.1
Bacon, D.J.2
-
28
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A.G., Brenner, S.E., Hubbard, T. and Chothia, C.: SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247 (1995) 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
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