Coat protein gene diversity among Chrysanthemum virus B isolates from India

Archives of Virology

Volumn 152, Issue 2, 2007, Pages 405-413

  Singh, L ^a   Hallan, V ^a,c   Jabeen, N ^a   Singh, A K ^a   Ram, R ^a   Martin, D P ^b   Zaidi, A A ^a  

^a CSIR INSTITUTE OF HIMALAYAN BIORESOURCE TECHNOLOGY   (India)

^b UNIVERSITY OF CAPE TOWN   (South Africa)

^c UNIVERSITY OF BASEL   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; CARLAVIRUS; CHEMISTRY; CHRYSANTHEMUM; CLASSIFICATION; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENETICS; INDIA; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE HOMOLOGY; VIROLOGY; VIRUS GENE;

AMINO ACID SEQUENCE; BASE SEQUENCE; CAPSID PROTEINS; CARLAVIRUS; CHRYSANTHEMUM; GENES, VIRAL; INDIA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECOMBINATION, GENETIC; RNA, VIRAL; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; VARIATION (GENETICS);

CHRYSANTHEMUM; CHRYSANTHEMUM VIRUS B;

EID: 33846404203     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-006-0854-4     Document Type: Article

References (33)

1. OM Alegria M Royer M Bousalem M Chatenet M Peterschmitt JC Girard P Rott 2003 Genetic diversity in the coat protein region of sugarcane mosaic virus isolates from eight countries, particularly from Cameroon and Congo Arch Virol 148 357 372
2. SF Altschul W Gish W Miller EW Myers DJ Lipman 1990 Basic local alignment search tool J Mol Biol 215 403 410
3. K Bananej A Kheyr-Pour G Hosseini-Salekdeh G Ahoonmanesh 2004 Complete nucleotide sequence of Iranian isolate of Tomato yellow leaf curl virus: further evidence for natural recombination among geminiviruses Arch Virol 149 1435 1443
4. ER Chare EC Holmes 2006 A phylogenetic survey of recombination frequency in plant RNA viruses Arch Virol 151 933 946
5. R Chenna H Sugawara T Koike R Lopez TJ Gibson DG Higgins JD Thompson 2003 Multiple sequence alignment with the Clustal series of programs Nucleic Acids Res 31 3497 3500
6. SA Choi KH Ryu 2003 The complete nucleotide sequence of the genome RNA of Lily symptomless virus and its comparison with that of other carlaviruses Arch Virol 148 1943 1955
7. J Felsenstein 1989 PHYLIP - Phylogeny inference package (version 3.2) Cladistics 5 164 166
8. R Froissart D Roze M Uzest L Galibert S Blanc Y Michalakis 2005 Recombination every day: abundant recombination in a virus during a single multi-cellular host infection PloS Biol 3 e89
9. MJ Gibbs JS Armstrong AJ Gibbs 2000 Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences Bioinformatics 16 573 582
10. S Guindon O Gascuel 2003 A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood Syst Biol 52 696 704
11. I Haselhof RH Symons 1981 Chrysanthemum stunt viroid: primary sequence and secondary structure Nucleic Acids Res 9 2741 2752
12. Koenig R (1982) Carlavirus group. CMI/AAB Description of plant viruses no. 259
13. KE Levay SK Zavriev 1991 Nucleotide sequence and gene organisation of the 3′-terminal region of Chrysanthemum virus B genomic RNA J Gen Virol 72 2333 2337
14. J Martelik V Mokra 1998 Tomato spotted wilt virus in ornamental plants, vegetables and weeds in the Czech Republic Acta Virol 42 347 351
15. DP Martin D Posada KA Crandall C Williamson 2005 A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints AIDS Res Hum Retrovir 21 98 102
16. DP Martin E Rybicki 2000 RDP: detection of recombination amongst aligned sequences Bioinformatics 16 562 563
17. DP Martin C Williamson D Posada 2005 RDP2: Recombination detection and analysis from sequence alignments Bioinformatics 21 260 262
18. J Maynard Smith 1992 Analysing the mosaic structure of genes J Mol Evol 34 126 129
19. J Navas-Castillo S Sanchez-Camposs E Noris D Louro GP Accotto E Moriones 2000 Natural recombination between Tomato yellow leaf curl virus-Is and Tomato leaf curl virus J Gen Virol 81 2797 2801
20. D O'Reilly CJ Thomas RHA Coutts 1991 Tomato aspermy virus has an evolutionary relationship with other tripartite RNA viruses J Gen Virol 72 1 7
21. K Ohshima Y Yamaguchi R Hirota T Hamamoto K Tomimura Z Tan T Sano F Azuhata JA Walsh J Fletcher J Chen A Gera A Gibbs 2002 Molecular evolution of Turnip mosaic virus: evidence of host adaptation, genetic recombination and geographical spread J Gen Virol 83 1511 1521
22. M Padidam S Sawyer C Fauquet 1999 Possible emergence of new geminiviruses by frequent recombination Virology 265 218 225
23. RK Raizada KM Srivastava G Chandra BP Singh 1989 Comparative evaluation of sero-diagnostic methods for detection of Chrysanthemum virus B in chrysanthemum Indian J Exp Biol 27 1094 1096
24. CP Romaine RK Horst 1975 Suggested viroid etiology of Chrysanthemum chlorotic mottle disease Virology 64 86 95
25. MJ Roossinck 1997 Mechanisms of plant virus evolution Annu Rev Phytopathol 35 191 209
26. L Rubio MA Ayllon P Kong A Fernandez M Polek J Guerri P Moreno BW Falk 2001 Genetic variation of Citrus tristeza virus isolates from California and Spain: evidence for mixed infections and recombination J Virol 75 8054 8062
27. AE Simon JJ Bujarski 1994 RNA-RNA recombination and evolution in virus-infected plants Annu Rev Phytopathol 29 337 361
28. Singh HP (2000) Current status of floriculture - national and international scenario. In: Singh HP, Dadlani NK (eds) Commercial floriculture. FAO and DAC, Ministry of Agriculture, Govt. of India, New Delhi, pp 1-26
29. GR Smith Z Borg BEL Lockhart KS Braithwaite MJ Gibbs 2000 Sugarcane yellow leaf virus: a novel member of the Luteoviridae that probably arose by inter-species recombination J Gen Virol 81 1865 1869
30. JH Strauss EG Strauss 1988 Evolution of RNA viruses Annu Rev Microbiol 42 657 683
31. Z Tan Y Wada J Chen K Ohshima 2004 Inter- and intralineage recombinants are common in natural populations of Turnip mosaic virus J Gen Virol 85 2683 2696
32. JTJ Verhoeven JW Roenhorst I Cortes D Peters 1996 Detection of a novel tospovirus in chrysanthemum Acta Hort 432 44 51
33. N Verma A Sharma R Ram V Hallan AA Zaidi ID Garg 2003 Detection, identification and incidence of Chrysanthemum B carlavirus in chrysanthemum in India Crop Prot 22 425 429