-
1
-
-
0036842986
-
Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia
-
Akman L., et al. Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia. Nat. Genet. 32 (2002) 402-407
-
(2002)
Nat. Genet.
, vol.32
, pp. 402-407
-
-
Akman, L.1
-
2
-
-
0032840799
-
Genome degradation is an ongoing process in Rickettsia
-
Andersson J.O., and Andersson S.G.E. Genome degradation is an ongoing process in Rickettsia. Mol. Biol. Evol. 16 (1999) 1178-1191
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1178-1191
-
-
Andersson, J.O.1
Andersson, S.G.E.2
-
3
-
-
0035029472
-
Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes
-
Andersson J.O., and Andersson S.G.E. Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes. Mol. Biol. Evol. 18 (2001) 829-839
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 829-839
-
-
Andersson, J.O.1
Andersson, S.G.E.2
-
4
-
-
0035140685
-
Genomic gigantism: DNA loss is slow in mountain grasshoppers
-
Bensasson D., Petrov D.A., Zhang D.X., Hartl D.L., and Hewitt G.M. Genomic gigantism: DNA loss is slow in mountain grasshoppers. Mol. Biol. Evol. 18 (2001) 246-253
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 246-253
-
-
Bensasson, D.1
Petrov, D.A.2
Zhang, D.X.3
Hartl, D.L.4
Hewitt, G.M.5
-
5
-
-
0034967389
-
Evidence for two mechanisms of palindrome-stimulated deletion in Escherichia coli: single-strand annealing and replication slipped mispairing
-
Bzymek M., and Lovett S.T. Evidence for two mechanisms of palindrome-stimulated deletion in Escherichia coli: single-strand annealing and replication slipped mispairing. Genetics 158 (2001) 527-540
-
(2001)
Genetics
, vol.158
, pp. 527-540
-
-
Bzymek, M.1
Lovett, S.T.2
-
6
-
-
0032731436
-
Sequence evolution in bacterial endosymbionts having extreme base compositions
-
Clark M.A., Moran N.A., and Baumann P. Sequence evolution in bacterial endosymbionts having extreme base compositions. Mol. Biol. Evol. 16 (1999) 1586-1598
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1586-1598
-
-
Clark, M.A.1
Moran, N.A.2
Baumann, P.3
-
7
-
-
23744515783
-
Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects
-
Degnan P.H., Lazarus A.B., and Wernegreen J.J. Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects. Genome Res. 15 (2005) 1023-1033
-
(2005)
Genome Res.
, vol.15
, pp. 1023-1033
-
-
Degnan, P.H.1
Lazarus, A.B.2
Wernegreen, J.J.3
-
8
-
-
0038448991
-
Phylogenetic evidence for hybrid origins of asexual lineage in an aphid species
-
Delmotte F., et al. Phylogenetic evidence for hybrid origins of asexual lineage in an aphid species. Evolution 57 (2003) 1291-1303
-
(2003)
Evolution
, vol.57
, pp. 1291-1303
-
-
Delmotte, F.1
-
9
-
-
33846208919
-
-
Drummond, A.J., Rambaut, A., 2003. BEAST v.1.0. Available from http://evolve.zoo.ox.ac.uk/beast/.
-
-
-
-
10
-
-
0036021407
-
Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
-
Drummond A.J., Nicholls G.K., Rodrigo A.G., and Solomon W. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161 (2002) 1307-1320
-
(2002)
Genetics
, vol.161
, pp. 1307-1320
-
-
Drummond, A.J.1
Nicholls, G.K.2
Rodrigo, A.G.3
Solomon, W.4
-
11
-
-
0036021697
-
Genome deterioration: loss of repeated sequences and accumulation of junk DNA
-
Frank A.C., Amiri H., and Andersson S.G.E. Genome deterioration: loss of repeated sequences and accumulation of junk DNA. Genetica 115 (2002) 1-12
-
(2002)
Genetica
, vol.115
, pp. 1-12
-
-
Frank, A.C.1
Amiri, H.2
Andersson, S.G.E.3
-
12
-
-
0037007113
-
Extreme genome reduction in Buchnera spp.: toward the minimal genome needed for symbiotic life
-
Gil R., Sabater-Munoz B., Latorre A., Silva F.J., and Moya A. Extreme genome reduction in Buchnera spp.: toward the minimal genome needed for symbiotic life. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 4454-4458
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 4454-4458
-
-
Gil, R.1
Sabater-Munoz, B.2
Latorre, A.3
Silva, F.J.4
Moya, A.5
-
13
-
-
0041422250
-
The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes
-
Gil R., et al. The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 9388-9393
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 9388-9393
-
-
Gil, R.1
-
14
-
-
0034641917
-
The complete sequence of the mucosal pathogen Ureaplasma urealyticum
-
Glass J.I., Lefkowitz E.J., Glass J.S., Heiner C.R., Chen E.Y., and Cassell G.H. The complete sequence of the mucosal pathogen Ureaplasma urealyticum. Nature 407 (2000) 757-762
-
(2000)
Nature
, vol.407
, pp. 757-762
-
-
Glass, J.I.1
Lefkowitz, E.J.2
Glass, J.S.3
Heiner, C.R.4
Chen, E.Y.5
Cassell, G.H.6
-
15
-
-
6344269329
-
The evolutionary fate of nonfunctional DNA in the bacterial endosymbiont Buchnera aphidicola
-
Gómez-Valero L., Latorre A., and Silva F.J. The evolutionary fate of nonfunctional DNA in the bacterial endosymbiont Buchnera aphidicola. Mol. Biol. Evol. 21 (2004) 2172-2181
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 2172-2181
-
-
Gómez-Valero, L.1
Latorre, A.2
Silva, F.J.3
-
16
-
-
0041828230
-
Is small indel bias a determinant of genome size?
-
Gregory T.R. Is small indel bias a determinant of genome size?. Trends Genet. 19 (2003) 485-488
-
(2003)
Trends Genet.
, vol.19
, pp. 485-488
-
-
Gregory, T.R.1
-
17
-
-
3242810318
-
MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5 (2004) 150-163
-
(2004)
Brief. Bioinform.
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
19
-
-
0003421005
-
-
Sinauer Associates, Massachusetts
-
Li W.-H. Molecular Evolution (1997), Sinauer Associates, Massachusetts
-
(1997)
Molecular Evolution
-
-
Li, W.-H.1
-
20
-
-
0030482617
-
Genetic variation in natural populations of the aphid Rhopalosiphum padi as revealed by maternally inherited markers
-
Martinez-Torres D., Simon J.C., Fereres A., and Moya A. Genetic variation in natural populations of the aphid Rhopalosiphum padi as revealed by maternally inherited markers. Mol. Ecol. 5 (1996) 659-669
-
(1996)
Mol. Ecol.
, vol.5
, pp. 659-669
-
-
Martinez-Torres, D.1
Simon, J.C.2
Fereres, A.3
Moya, A.4
-
21
-
-
0035479142
-
Deletional bias and the evolution of bacterial genomes
-
Mira A., Ochman H., and Moran N.A. Deletional bias and the evolution of bacterial genomes. Trends Genet. 17 (2001) 589-596
-
(2001)
Trends Genet.
, vol.17
, pp. 589-596
-
-
Mira, A.1
Ochman, H.2
Moran, N.A.3
-
23
-
-
0029866448
-
Accelerated evolution and Muller's rachet in endosymbiotic bacteria
-
Moran N.A. Accelerated evolution and Muller's rachet in endosymbiotic bacteria. Proc. Natl. Acad. Sci. U. S. A. 93 (1996) 2873-2878
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 2873-2878
-
-
Moran, N.A.1
-
24
-
-
0035749612
-
The process of genome shrinkage in the obligate symbiont Buchnera aphidicola
-
RESEARCH0054
-
Moran N.A., and Mira A. The process of genome shrinkage in the obligate symbiont Buchnera aphidicola. Genom. Biol. 2 (2001) RESEARCH0054
-
(2001)
Genom. Biol.
, vol.2
-
-
Moran, N.A.1
Mira, A.2
-
25
-
-
0027254254
-
A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts
-
Moran N.A., Munson M.A., Baumann P., and Ishikawa H. A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts. Proc. R. Soc. Lond., B Biol. Sci. 253 (1993) 167-171
-
(1993)
Proc. R. Soc. Lond., B Biol. Sci.
, vol.253
, pp. 167-171
-
-
Moran, N.A.1
Munson, M.A.2
Baumann, P.3
Ishikawa, H.4
-
26
-
-
0030934592
-
Effects of nucleotide sequence alignment on phylogeny estimation: a case study of 18S rDNAs of Apicomplexa
-
Morrison D.A., and Ellis J.T. Effects of nucleotide sequence alignment on phylogeny estimation: a case study of 18S rDNAs of Apicomplexa. Mol. Biol. Evol. 14 (1997) 428-441
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 428-441
-
-
Morrison, D.A.1
Ellis, J.T.2
-
27
-
-
24744468387
-
Bacterial genome size reduction by experimental evolution
-
Nilsson A.I., Koskiniemi S., Eriksson S., Kugelberd E., Hinton J.C.D., and Andersson D.I. Bacterial genome size reduction by experimental evolution. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 12112-12116
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 12112-12116
-
-
Nilsson, A.I.1
Koskiniemi, S.2
Eriksson, S.3
Kugelberd, E.4
Hinton, J.C.D.5
Andersson, D.I.6
-
28
-
-
0031593238
-
Patterns and rates of indel evolution in processed pseudogenes from humans and murids
-
Ophir R., and Graur D. Patterns and rates of indel evolution in processed pseudogenes from humans and murids. Gene 205 (1997) 191-202
-
(1997)
Gene
, vol.205
, pp. 191-202
-
-
Ophir, R.1
Graur, D.2
-
29
-
-
33750009568
-
A small microbial genome: the end of a long symbiotic relationship?
-
Pérez-Brocal V., et al. A small microbial genome: the end of a long symbiotic relationship?. Science 314 (2006) 312-313
-
(2006)
Science
, vol.314
, pp. 312-313
-
-
Pérez-Brocal, V.1
-
30
-
-
0033573925
-
Patterns of nucleotide substitution in Drosophila and mammalian genomes
-
Petrov D.A., and Hartl D.L. Patterns of nucleotide substitution in Drosophila and mammalian genomes. Proc. Natl. Acad. Sci. U. S. A. 96 (1999) 1475-1479
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 1475-1479
-
-
Petrov, D.A.1
Hartl, D.L.2
-
31
-
-
0031773680
-
MODELTEST: testing the model of DNA substitution
-
Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
32
-
-
0037803483
-
An appraisal of the potential for illegitimate recombination in bacterial genomes and its consequences: from duplications to genome reduction
-
Rocha E.P.C. An appraisal of the potential for illegitimate recombination in bacterial genomes and its consequences: from duplications to genome reduction. Genome Res. 13 (2003) 1123-1132
-
(2003)
Genome Res.
, vol.13
, pp. 1123-1132
-
-
Rocha, E.P.C.1
-
33
-
-
0036606915
-
Base composition bias might result from competition for metabolic resources
-
Rocha E., and Danchin A. Base composition bias might result from competition for metabolic resources. Trends Genet. 18 (2002) 291-294
-
(2002)
Trends Genet.
, vol.18
, pp. 291-294
-
-
Rocha, E.1
Danchin, A.2
-
34
-
-
0028351405
-
Evolutionary rates of insertion and deletion in noncoding nucleotide-sequences of primates
-
Saitou N., and Ueda S. Evolutionary rates of insertion and deletion in noncoding nucleotide-sequences of primates. Mol. Biol. Evol. 11 (1994) 504-512
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 504-512
-
-
Saitou, N.1
Ueda, S.2
-
35
-
-
0034984410
-
The phylogenetic analysis of variable-length sequence data: elongation factor-1 alpha introns in European populations of the parasitoid wasp genus Pauesia (Hymenoptera: Braconidae: Aphidiinae)
-
Sanchis A., Michelena J.M., Latorre A., Quicke D.L.J., Gardenfors U., and Belshaw R. The phylogenetic analysis of variable-length sequence data: elongation factor-1 alpha introns in European populations of the parasitoid wasp genus Pauesia (Hymenoptera: Braconidae: Aphidiinae). Mol. Biol. Evol. 18 (2001) 1117-1131
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1117-1131
-
-
Sanchis, A.1
Michelena, J.M.2
Latorre, A.3
Quicke, D.L.J.4
Gardenfors, U.5
Belshaw, R.6
-
36
-
-
0034618559
-
Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS
-
Shigenobu S., Watanabe H., Hattori M., Sakaki Y., and Ishikawa H. Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS. Nature 407 (2000) 81-86
-
(2000)
Nature
, vol.407
, pp. 81-86
-
-
Shigenobu, S.1
Watanabe, H.2
Hattori, M.3
Sakaki, Y.4
Ishikawa, H.5
-
37
-
-
0031740241
-
Structure and evolution of the leucine plasmids carried by the endosymbiont (Buchnera aphidicola) from aphids of the family Aphididae
-
Silva F.J., van Ham R.C., Sabater B., and Latorre A. Structure and evolution of the leucine plasmids carried by the endosymbiont (Buchnera aphidicola) from aphids of the family Aphididae. FEMS Microbiol. Lett. 168 (1998) 43-49
-
(1998)
FEMS Microbiol. Lett.
, vol.168
, pp. 43-49
-
-
Silva, F.J.1
van Ham, R.C.2
Sabater, B.3
Latorre, A.4
-
38
-
-
0035500843
-
Genome size reduction through multiple events of gene disintegration in Buchnera APS
-
Silva F.J., Latorre A., and Moya A. Genome size reduction through multiple events of gene disintegration in Buchnera APS. Trends Genet. 17 (2001) 615-618
-
(2001)
Trends Genet.
, vol.17
, pp. 615-618
-
-
Silva, F.J.1
Latorre, A.2
Moya, A.3
-
39
-
-
0037384544
-
Why are the genomes of endosymbiotic bacteria so stable?
-
Silva F.J., Latorre A., and Moya A. Why are the genomes of endosymbiotic bacteria so stable?. Trends Genet. 19 (2003) 176-180
-
(2003)
Trends Genet.
, vol.19
, pp. 176-180
-
-
Silva, F.J.1
Latorre, A.2
Moya, A.3
-
40
-
-
0029868130
-
Molecular characterization of cyclic and obligate parthenogens in the aphid Rhopalosiphum padi (L)
-
Simon J.C., Martinez-Torres D., Latorre A., Moya A., and Hebert P.D.N. Molecular characterization of cyclic and obligate parthenogens in the aphid Rhopalosiphum padi (L). Proc. R. Soc. Lond., B Biol. Sci. 263 (1996) 481-486
-
(1996)
Proc. R. Soc. Lond., B Biol. Sci.
, vol.263
, pp. 481-486
-
-
Simon, J.C.1
Martinez-Torres, D.2
Latorre, A.3
Moya, A.4
Hebert, P.D.N.5
-
41
-
-
0033150488
-
Molecular markers linked to breeding system differences in segregating and natural populations of the cereal aphid Rhopalosiphum padi L
-
Simon J.C., Leterme N., and Latorre A. Molecular markers linked to breeding system differences in segregating and natural populations of the cereal aphid Rhopalosiphum padi L. Mol. Ecol. 8 (1999) 965-973
-
(1999)
Mol. Ecol.
, vol.8
, pp. 965-973
-
-
Simon, J.C.1
Leterme, N.2
Latorre, A.3
-
42
-
-
0035233856
-
Reduction of bacterial genome size and expansion resulting from obligate intracellular lifestyle and adaptation to soil habitat
-
Stêpkowski T., and Legocki A.B. Reduction of bacterial genome size and expansion resulting from obligate intracellular lifestyle and adaptation to soil habitat. Acta Biochim. Pol. 48 (2001) 367-381
-
(2001)
Acta Biochim. Pol.
, vol.48
, pp. 367-381
-
-
Stêpkowski, T.1
Legocki, A.B.2
-
44
-
-
0027453388
-
Simple methods for testing the molecular evolutionary clock hypothesis
-
Tajima F. Simple methods for testing the molecular evolutionary clock hypothesis. Genetics 135 (1993) 599-607
-
(1993)
Genetics
, vol.135
, pp. 599-607
-
-
Tajima, F.1
-
45
-
-
0037189373
-
50 million years of genomic stasis in endosymbiotic bacteria
-
Tamas I., et al. 50 million years of genomic stasis in endosymbiotic bacteria. Science 296 (2002) 2376-2379
-
(2002)
Science
, vol.296
, pp. 2376-2379
-
-
Tamas, I.1
-
46
-
-
0027157960
-
Estimation of the number of nucleotide substitutions in the control region of mitochondrial-DNA in humans and chimpanzees
-
Tamura K., and Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial-DNA in humans and chimpanzees. Mol. Biol. Evol. 10 (1993) 512-526
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 512-526
-
-
Tamura, K.1
Nei, M.2
-
47
-
-
0031574072
-
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
48
-
-
0037457901
-
Reductive genome evolution in Buchnera aphidicola
-
van Ham R.C., et al. Reductive genome evolution in Buchnera aphidicola. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 581-586
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 581-586
-
-
van Ham, R.C.1
-
49
-
-
0036847064
-
Genome evolution in bacterial endosymbionts of insects
-
Wernegreen J.J. Genome evolution in bacterial endosymbionts of insects. Nat. Rev. Genet. 3 (2002) 850-861
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 850-861
-
-
Wernegreen, J.J.1
-
50
-
-
27444444566
-
For better or worse: genomic consequences of intracellular mutualism and parasitism
-
Wernegreen J.J. For better or worse: genomic consequences of intracellular mutualism and parasitism. Curr. Opin. Genet. Dev. 15 (2005) 572-583
-
(2005)
Curr. Opin. Genet. Dev.
, vol.15
, pp. 572-583
-
-
Wernegreen, J.J.1
|