-
1
-
-
0032573579
-
Zebrafish hox clusters and vertebrate genome evolution
-
Amores A., Force A., Yan Y.-L., Joly L., Amemiya C., Fritz A., Ho R.K., Langeland J., Prince V., Wang Y.-L., Westerfield M., Ekker M., Postlethwait J.H., Zebrafish hox clusters and vertebrate genome evolution, Science 282 (1998) 1711-1714.
-
(1998)
Science
, vol.282
, pp. 1711-1714
-
-
Amores, A.1
Force, A.2
Yan, Y.-L.3
Joly, L.4
Amemiya, C.5
Fritz, A.6
Ho, R.K.7
Langeland, J.8
Prince, V.9
Wang, Y.-L.10
Westerfield, M.11
Ekker, M.12
Postlethwait, J.H.13
-
2
-
-
0034669139
-
Phylogeny of the SOX family of developmental transcription factors based on sequence and structural indicators
-
Bowles J., Schepers G., Koopman P., Phylogeny of the SOX family of developmental transcription factors based on sequence and structural indicators, Dev. Biol. 227 (2000) 239-255.
-
(2000)
Dev. Biol
, vol.227
, pp. 239-255
-
-
Bowles, J.1
Schepers, G.2
Koopman, P.3
-
3
-
-
0035281835
-
Sox9 genes on duplicated zebrafish chromosomes: Expression of similar transcription activators in distinct sites
-
Chiang E.F.-L., Pai C.-I., Wyatt M., Yan Y.-L., Postlethwait J., Chung B.-C., Two Sox9 genes on duplicated zebrafish chromosomes: expression of similar transcription activators in distinct sites, Dev. Biol. 231 (2001) 149-163.
-
(2001)
Dev. Biol
, vol.231
, pp. 149-163
-
-
Chiang, E.F.-L.1
Pai, C.-I.2
Wyatt, M.3
Yan, Y.-L.4
Postlethwait, J.5
Chung, B.-C.6
Two7
-
4
-
-
0031767268
-
Further complexity of the human Sox gene family revealed by the combined use of highly degenerate primers and nested PCR
-
Crémazy F., Soullier S., Berta P., Jay P., Further complexity of the human Sox gene family revealed by the combined use of highly degenerate primers and nested PCR, FEBS Lett. 438 (1998) 311-314.
-
(1998)
FEBS Lett
, vol.438
, pp. 311-314
-
-
Crémazy, F.1
Soullier, S.2
Berta, P.3
Jay, P.4
-
5
-
-
0000228203
-
A model of evolutionary change in proteins
-
Dayhoof M.O, Ed, National Biomedical Research Foundation, Silver Spring, MD
-
Dayhoof M.O., Schiwartz R.M., Orcutt B.C., A model of evolutionary change in proteins, in: Dayhoof M.O. (Ed.), Atlas of protein sequence and structure, National Biomedical Research Foundation, Silver Spring, MD, 1978, pp. 345-352.
-
(1978)
Atlas of protein sequence and structure
, pp. 345-352
-
-
Dayhoof, M.O.1
Schiwartz, R.M.2
Orcutt, B.C.3
-
6
-
-
0034007318
-
Expression of Sox11 gene duplicates in zebrafish suggests the reciprocal loss of ancestral gene expression patterns in development
-
De Martino S., Yan Y.-L., Jowett T., Postlethwait J.H., Varga Z.M., Ashworth A., Austin C.A., Expression of Sox11 gene duplicates in zebrafish suggests the reciprocal loss of ancestral gene expression patterns in development, Dev. Dynam. 217 (2000) 279-292.
-
(2000)
Dev. Dynam
, vol.217
, pp. 279-292
-
-
De Martino, S.1
Yan, Y.-L.2
Jowett, T.3
Postlethwait, J.H.4
Varga, Z.M.5
Ashworth, A.6
Austin, C.A.7
-
7
-
-
0026719256
-
A conserved family of genes related to the testis determining gene, SRY
-
Denny P., Swift S., Brand N., Dabhade N., Barton P., Ashworth A., A conserved family of genes related to the testis determining gene, SRY, Nucleic Acids Res. 20 (1992) 2887.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 2887
-
-
Denny, P.1
Swift, S.2
Brand, N.3
Dabhade, N.4
Barton, P.5
Ashworth, A.6
-
8
-
-
0037150614
-
Sex determination and sex differentiation in fish: An overview of genetic, physiological and environmental influences
-
Devlin R.H., Nagahama Y., Sex determination and sex differentiation in fish: an overview of genetic, physiological and environmental influences, Aquaculture 208 (2002) 191-364.
-
(2002)
Aquaculture
, vol.208
, pp. 191-364
-
-
Devlin, R.H.1
Nagahama, Y.2
-
9
-
-
1342321749
-
Analysis of the Sox gene family in the European sea bass (Dicentrarchus labrax)
-
Galay-Burgos M., Llewellyn L., Mylonas C.C., Canario A.V.M., Zanuy S., Sweeney G.E. Analysis of the Sox gene family in the European sea bass (Dicentrarchus labrax), Comp. Biochem. Phys. B 137 (2004) 279-284.
-
(2004)
Comp. Biochem. Phys. B
, vol.137
, pp. 279-284
-
-
Galay-Burgos, M.1
Llewellyn, L.2
Mylonas, C.C.3
Canario, A.V.M.4
Zanuy, S.5
Sweeney, G.E.6
-
10
-
-
0025328296
-
-
Gubbay J., Collignon J., Koopman P., Capel B., Economou A., Münsterberg A., Vivian N., Goodfellow P., Lovell-Badge R., A gene mapping to the sex-determining region of the mouse Y chromosome is a member of a novel family of embryonically expressed genes, Nature 346 (1990) 245-250.
-
Gubbay J., Collignon J., Koopman P., Capel B., Economou A., Münsterberg A., Vivian N., Goodfellow P., Lovell-Badge R., A gene mapping to the sex-determining region of the mouse Y chromosome is a member of a novel family of embryonically expressed genes, Nature 346 (1990) 245-250.
-
-
-
-
11
-
-
0034995150
-
Sequences of cytochrome b gene for primitive cyprinid fishes in East Asia and their phylogenetic concerning
-
He S., Chen Y., Nakajima T., Sequences of cytochrome b gene for primitive cyprinid fishes in East Asia and their phylogenetic concerning, Chinese Sci. Bull. 46 (2001) 661-665.
-
(2001)
Chinese Sci. Bull
, vol.46
, pp. 661-665
-
-
He, S.1
Chen, Y.2
Nakajima, T.3
-
12
-
-
16544387821
-
Molecular phylogenetic relationships of Eastern Asian Cyprinidae (Pisces: Cypriniformes) inferred from cytochrome b sequences
-
He S., Liu H., Chen Y., Kuwahara M., Nakajima T., Zhong Y., Molecular phylogenetic relationships of Eastern Asian Cyprinidae (Pisces: Cypriniformes) inferred from cytochrome b sequences, Sci. China Ser. C 47 (2004) 130-138.
-
(2004)
Sci. China Ser. C
, vol.47
, pp. 130-138
-
-
He, S.1
Liu, H.2
Chen, Y.3
Kuwahara, M.4
Nakajima, T.5
Zhong, Y.6
-
13
-
-
4143134848
-
Phylogenetic timing of the fishspecific genome duplication correlates with the diversification of teleost fish
-
Hoegg S., Brinkmann H., Taylor J.S., Meyer A., Phylogenetic timing of the fishspecific genome duplication correlates with the diversification of teleost fish, J. Mol. Evol. 59 (2004) 190-203.
-
(2004)
J. Mol. Evol
, vol.59
, pp. 190-203
-
-
Hoegg, S.1
Brinkmann, H.2
Taylor, J.S.3
Meyer, A.4
-
15
-
-
0032927874
-
Mechanism of regulatory target selection by the SOX high-mobility-group domain proteins as revealed by comparison of SOX1/2/3 and SOX9
-
Kamachi Y., Cheah K.S.E., Kondoh H., Mechanism of regulatory target selection by the SOX high-mobility-group domain proteins as revealed by comparison of SOX1/2/3 and SOX9, Mol. Cell. Biol. 19 (1999) 107-120.
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 107-120
-
-
Kamachi, Y.1
Cheah, K.S.E.2
Kondoh, H.3
-
16
-
-
0034175998
-
Pairing SOX off: With partners in the regulation of embryonic development
-
Kamachi Y., Uchikawa M., Kondoh H., Pairing SOX off: with partners in the regulation of embryonic development, Trends Genet. 16 (2000) 182-187.
-
(2000)
Trends Genet
, vol.16
, pp. 182-187
-
-
Kamachi, Y.1
Uchikawa, M.2
Kondoh, H.3
-
17
-
-
1542710238
-
Origin and diversity of the Sox transcription factor gene family: Genome-wide analysis in Fugu rubripes
-
Koopman P., Schepers G., Brenner S., Venkatesh B., Origin and diversity of the Sox transcription factor gene family: genome-wide analysis in Fugu rubripes, Gene 328 (2004) 177-186.
-
(2004)
Gene
, vol.328
, pp. 177-186
-
-
Koopman, P.1
Schepers, G.2
Brenner, S.3
Venkatesh, B.4
-
18
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar S., Tamura K., Nei M., MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment, Brief. Bioinformatics 5 (2004) 150-163.
-
(2004)
Brief. Bioinformatics
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
19
-
-
0001352459
-
Mitochondrial molecular clocks and the origin of euteleostean biodiversity: Familial radiation of perciformsmay have predated the Cretaceous/Tertiary boundary
-
Kato M, Ed, Springer-Verlag, Hong Kong
-
Kumazawa Y., Yamaguchi M., Nishida M., Mitochondrial molecular clocks and the origin of euteleostean biodiversity: Familial radiation of perciformsmay have predated the Cretaceous/Tertiary boundary, In: Kato M. (Ed.), The Biology of Biodiversity, Springer-Verlag, Hong Kong, 1999, pp. 35-52.
-
(1999)
The Biology of Biodiversity
, pp. 35-52
-
-
Kumazawa, Y.1
Yamaguchi, M.2
Nishida, M.3
-
20
-
-
0028723230
-
How many nucleotides are required to resolve a phylogenetic problem? The use of a new statistical method applicable to available sequences
-
Lecointre G., Philippe H., Vân Lê H.L., Le Guyader H., How many nucleotides are required to resolve a phylogenetic problem? The use of a new statistical method applicable to available sequences, Mol. Phylogenet. Evol. 3 (1994) 292-309.
-
(1994)
Mol. Phylogenet. Evol
, vol.3
, pp. 292-309
-
-
Lecointre, G.1
Philippe, H.2
Vân Lê, H.L.3
Le Guyader, H.4
-
21
-
-
0018953460
-
Rate of gene silencing at duplicate loci: A theoretical study and interpretation of data from tetraploid fishes
-
Li W.-H., Rate of gene silencing at duplicate loci: A theoretical study and interpretation of data from tetraploid fishes, Genetics 95 (1980) 237-258.
-
(1980)
Genetics
, vol.95
, pp. 237-258
-
-
Li, W.-H.1
-
22
-
-
0037047587
-
Gene duplication and evolution
-
Lynch M., Gene duplication and evolution, Science 297 (2002) 945-947.
-
(2002)
Science
, vol.297
, pp. 945-947
-
-
Lynch, M.1
-
23
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch M., Conery J.S., The evolutionary fate and consequences of duplicate genes, Science 290 (2000) 1151-1155.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
24
-
-
0037270015
-
The evolutionary demography of duplicate genes
-
Lynch M., Conery J.S., The evolutionary demography of duplicate genes, J. Struct. Funct. Genomics 3 (2003) 35-44.
-
(2003)
J. Struct. Funct. Genomics
, vol.3
, pp. 35-44
-
-
Lynch, M.1
Conery, J.S.2
-
25
-
-
17244368487
-
Modeling gene and genome duplications in eukaryotes
-
Maere S., De Bodt S., Raes J., Casneuf T., Van Montagu M., Kuiper M., Van de Peer Y., Modeling gene and genome duplications in eukaryotes, Proc. Natl. Acad. Sci. USA 102 (2005) 5454-5459.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 5454-5459
-
-
Maere, S.1
De Bodt, S.2
Raes, J.3
Casneuf, T.4
Van Montagu, M.5
Kuiper, M.6
Van de Peer, Y.7
-
26
-
-
24144478490
-
Sox4b is a key player of pancreatic alpha cell differentiation in zebrafish
-
Mavropoulos A., Devos N., Biemar F., Zecchin E., Argenton F., Edlund H., Motte P., Martial J.A., Peers B., Sox4b is a key player of pancreatic alpha cell differentiation in zebrafish, Dev. Biol. 285 (2005) 211-223.
-
(2005)
Dev. Biol
, vol.285
, pp. 211-223
-
-
Mavropoulos, A.1
Devos, N.2
Biemar, F.3
Zecchin, E.4
Argenton, F.5
Edlund, H.6
Motte, P.7
Martial, J.A.8
Peers, B.9
-
27
-
-
0030716471
-
Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution
-
Nadeau J.H., Sankoff D., Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution, Genetics 147 (1997) 1259-1266.
-
(1997)
Genetics
, vol.147
, pp. 1259-1266
-
-
Nadeau, J.H.1
Sankoff, D.2
-
29
-
-
0034718504
-
Purifying selection and birth-and-death evolution in the ubiquitin gene family
-
Nei M., Rogozin I.B., Piontkivska H., Purifying selection and birth-and-death evolution in the ubiquitin gene family, Proc. Natl. Acad. Sci. USA 97 (2000) 10866-10871.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 10866-10871
-
-
Nei, M.1
Rogozin, I.B.2
Piontkivska, H.3
-
30
-
-
0034500239
-
Polyploid incidence and evolution
-
Otto S.P., Whitton J., Polyploid incidence and evolution, Ann. Rev. Genet. 34 (2000) 401-437.
-
(2000)
Ann. Rev. Genet
, vol.34
, pp. 401-437
-
-
Otto, S.P.1
Whitton, J.2
-
31
-
-
4444340536
-
Subfunction partitioning, the teleost radiation and the annotation of the human genome
-
Postlethwait J., Amores A., Cresko W., Singer A., Yan Y.-L., Subfunction partitioning, the teleost radiation and the annotation of the human genome, Trends Genet. 20 (2004) 481-490.
-
(2004)
Trends Genet
, vol.20
, pp. 481-490
-
-
Postlethwait, J.1
Amores, A.2
Cresko, W.3
Singer, A.4
Yan, Y.-L.5
-
32
-
-
0036845822
-
Splitting pairs: The diverging fates of duplicated genes
-
Prince V.E., Pickett F.B., Splitting pairs: the diverging fates of duplicated genes, Nat. Rev. Genet. 3 (2002) 827-837.
-
(2002)
Nat. Rev. Genet
, vol.3
, pp. 827-837
-
-
Prince, V.E.1
Pickett, F.B.2
-
33
-
-
0004202436
-
-
3rd edn, The University of Chicago Press, Chicago & London
-
Romer A.S., Vertebrate Paleontology, 3rd edn., The University of Chicago Press, Chicago & London, 1966, pp. 356-357.
-
(1966)
Vertebrate Paleontology
, pp. 356-357
-
-
Romer, A.S.1
-
34
-
-
0027185401
-
Theoretical foundation of the minimum-evolution method of phylogenetic inference
-
Rzhetesky A., Nei M., Theoretical foundation of the minimum-evolution method of phylogenetic inference, Mol. Biol. Evol. 10 (1993) 1073-1095.
-
(1993)
Mol. Biol. Evol
, vol.10
, pp. 1073-1095
-
-
Rzhetesky, A.1
Nei, M.2
-
35
-
-
0036696817
-
Twenty pairs of Sox: Extent, homology, and nomenclature of the mouse and human Sox transcription factor gene families
-
Schepers G.E., Teasdale R.D., Koopman P., Twenty pairs of Sox: extent, homology, and nomenclature of the mouse and human Sox transcription factor gene families, Dev. Cell 3 (2002) 167-170.
-
(2002)
Dev. Cell
, vol.3
, pp. 167-170
-
-
Schepers, G.E.1
Teasdale, R.D.2
Koopman, P.3
-
36
-
-
0004069901
-
-
Freeman, San Francisco, CA
-
Sneath P.H.A., Socal R.R., Numerical taxonomy, Freeman, San Francisco, CA, 1973.
-
(1973)
Numerical taxonomy
-
-
Sneath, P.H.A.1
Socal, R.R.2
-
37
-
-
0034819040
-
The ghost of selection past: Rates of evolution and functional divergence of anciently duplicated genes
-
Van de Peer Y., Taylor J.S., Braasch I., Meyer A., The ghost of selection past: Rates of evolution and functional divergence of anciently duplicated genes, J. Mol. Evol. 53 (2001) 436-446.
-
(2001)
J. Mol. Evol
, vol.53
, pp. 436-446
-
-
Van de Peer, Y.1
Taylor, J.S.2
Braasch, I.3
Meyer, A.4
-
38
-
-
1242274629
-
-
Vandepoele K., De Vos W., Taylor J.S., Meyer A., Van de Peer Y., Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates, Proc. Natl Acad. Sci. USA 101 (2004) 1638-1643.
-
Vandepoele K., De Vos W., Taylor J.S., Meyer A., Van de Peer Y., Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates, Proc. Natl Acad. Sci. USA 101 (2004) 1638-1643.
-
-
-
-
39
-
-
0033559518
-
Fromhead to toes: The multiple facets of Sox proteins
-
Wegner M., Fromhead to toes: the multiple facets of Sox proteins, Nucleic Acids Res. 27 (1999) 1409-1420.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 1409-1420
-
-
Wegner, M.1
-
40
-
-
0036668285
-
Matching SOX: Partner proteins and co-factors of the SOX family of transcriptional regulators
-
Wilson M., Koopman P., Matching SOX: partner proteins and co-factors of the SOX family of transcriptional regulators, Curr. Opin. Genet. Dev. 12 (2002) 441-446.
-
(2002)
Curr. Opin. Genet. Dev
, vol.12
, pp. 441-446
-
-
Wilson, M.1
Koopman, P.2
-
42
-
-
0027190026
-
Seven new members of the Sox gene family expressed during mouse development
-
Wright E.M., Snopek B., Koopman P., Seven new members of the Sox gene family expressed during mouse development, Nucleic Acids Res. 21 (1993) 744.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 744
-
-
Wright, E.M.1
Snopek, B.2
Koopman, P.3
-
43
-
-
20144388760
-
A pair of Sox: Distinct and overlapping functions of zebrafish Sox9 co-orthologs in craniofacial and pectoral fin development
-
Yan Y.-L., Willoughby J., Liu D., Crump J.G., Wilson C., Miller C.T., Singer A., Kimmel C., Westerfield M., Postlethwait J.H., A pair of Sox: distinct and overlapping functions of zebrafish Sox9 co-orthologs in craniofacial and pectoral fin development, Development 132 (2005) 1069-1083.
-
(2005)
Development
, vol.132
, pp. 1069-1083
-
-
Yan, Y.-L.1
Willoughby, J.2
Liu, D.3
Crump, J.G.4
Wilson, C.5
Miller, C.T.6
Singer, A.7
Kimmel, C.8
Westerfield, M.9
Postlethwait, J.H.10
-
44
-
-
0036010955
-
SRY-related genes in the genome of the rice field eel (Monopterus albus)
-
Zhou R., Cheng H., Zhang Q., Guo Y., Cooper R.K., Tiersch T.R., SRY-related genes in the genome of the rice field eel (Monopterus albus), Genet. Sel. Evol. 34 (2002) 129-137.
-
(2002)
Genet. Sel. Evol
, vol.34
, pp. 129-137
-
-
Zhou, R.1
Cheng, H.2
Zhang, Q.3
Guo, Y.4
Cooper, R.K.5
Tiersch, T.R.6
|