메뉴 건너뛰기




Volumn 16, Issue 2, 2006, Pages 196-201

A web-based search engine for triplex-forming oligonucleotide target sequences

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; OLIGONUCLEOTIDE;

EID: 33745213771     PISSN: 15454576     EISSN: None     Source Type: Journal    
DOI: 10.1089/oli.2006.16.196     Document Type: Article
Times cited : (47)

References (51)
  • 1
    • 0032573199 scopus 로고    scopus 로고
    • Thermodynamic, kinetic, and conformational properties of a parallel intermolecular DNA triplex containing 5′ and 3′ junctions
    • ASENSIO, J.L., DOSANJH, H.S., JENKINS, T.C., and LANE, A.N. (1998). Thermodynamic, kinetic, and conformational properties of a parallel intermolecular DNA triplex containing 5′ and 3′ junctions. Biochemistry 37, 15188-15198.
    • (1998) Biochemistry , vol.37 , pp. 15188-15198
    • Asensio, J.L.1    Dosanjh, H.S.2    Jenkins, T.C.3    Lane, A.N.4
  • 3
    • 0033081262 scopus 로고    scopus 로고
    • Covalent crosslinks introduced via a triple helix-forming oligonucleotide coupled to psoralen are inefficiently repaired
    • BARRE, F.X., GIOVANNANGELI, C., HÉLÈNE, C., and HAREL-BELLAN, A. (1999). Covalent crosslinks introduced via a triple helix-forming oligonucleotide coupled to psoralen are inefficiently repaired. Nucleic Acids Res. 27, 743-749.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 743-749
    • Barre, F.X.1    Giovannangeli, C.2    Hélène, C.3    Harel-Bellan, A.4
  • 4
    • 0025817256 scopus 로고
    • Second structural motif for recognition of DNA by oligonucleotide- directed triple-helix formation
    • BEAL, P.A., and DERVAN, P.B. (1991). Second structural motif for recognition of DNA by oligonucleotide-directed triple-helix formation. Science 251, 1360-1363.
    • (1991) Science , vol.251 , pp. 1360-1363
    • Beal, P.A.1    Dervan, P.B.2
  • 5
    • 10044225983 scopus 로고    scopus 로고
    • Triplex-forming oligonucleotides-Sequence-specific DNA ligands as tools for gene inhibition and for modulation of DNA-associated functions
    • BESCH, R., GIOVANNANGELI, C., and DEGITZ, K. (2004). Triplex-forming oligonucleotides-Sequence-specific DNA ligands as tools for gene inhibition and for modulation of DNA-associated functions. Curr. Drug Targets 5, 691-703.
    • (2004) Curr. Drug Targets , vol.5 , pp. 691-703
    • Besch, R.1    Giovannangeli, C.2    Degitz, K.3
  • 6
  • 7
    • 2942532389 scopus 로고    scopus 로고
    • Mutation frequencies in murine keratinocytes as a function of carcinogenic status
    • CHRISTENSEN, L.A., CONTI, C.J., FISCHER, S.M., and VASQUEZ, K.M. (2004). Mutation frequencies in murine keratinocytes as a function of carcinogenic status. Mol. Carcinog. 40, 122-133.
    • (2004) Mol. Carcinog. , vol.40 , pp. 122-133
    • Christensen, L.A.1    Conti, C.J.2    Fischer, S.M.3    Vasquez, K.M.4
  • 8
    • 0023802737 scopus 로고
    • Site-specific oligonucleotide binding represses transcription of the human c-myc gene in vitro
    • COONEY, M.. CZERNUSZEWICZ, G., POSTEL, E.H., FLINT, S.S., and HOGAN, M.E. (1988). Site-specific oligonucleotide binding represses transcription of the human c-myc gene in vitro. Science 241, 456-459.
    • (1988) Science , vol.241 , pp. 456-459
    • Cooney, M.1    Czernuszewicz, G.2    Postel, E.H.3    Flint, S.S.4    Hogan, M.E.5
  • 9
    • 0035947657 scopus 로고    scopus 로고
    • Triplex-induced recombination in human cell-free extracts. Dependence on XPA and HsRad51
    • DATTA, H.J., CHAN, P.P., VASQUEZ, K.M., GUPTA, R.C., and GLAZER, P.M. (2001). Triplex-induced recombination in human cell-free extracts. Dependence on XPA and HsRad51. J. Biol. Chem. 276, 18018-18023.
    • (2001) J. Biol. Chem. , vol.276 , pp. 18018-18023
    • Datta, H.J.1    Chan, P.P.2    Vasquez, K.M.3    Gupta, R.C.4    Glazer, P.M.5
  • 12
    • 0033981578 scopus 로고    scopus 로고
    • Triple-helix formation induces recombination in mammalian cells via a nucleotide excision repair-dependent pathway
    • FARUQI, A.F., DATTA, H.J., CARROLL, D., SEIDMAN, M.M., and GLAZER, P.M. (2000). Triple-helix formation induces recombination in mammalian cells via a nucleotide excision repair-dependent pathway. Mol. Cell. Biol. 20, 990-1000.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 990-1000
    • Faruqi, A.F.1    Datta, H.J.2    Carroll, D.3    Seidman, M.M.4    Glazer, P.M.5
  • 13
    • 0029912788 scopus 로고    scopus 로고
    • Recombination induced by triple helix-targeted DNA damage in mammalian cells
    • FARUQI, A.F., SEIDMAN, M.M., SEGAL, D.J., CARROLL, D., and GLAZER, P.M. (1996). Recombination induced by triple helix-targeted DNA damage in mammalian cells. Mol. Cell. Biol. 16,6820-6828.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 6820-6828
    • Faruqi, A.F.1    Seidman, M.M.2    Segal, D.J.3    Carroll, D.4    Glazer, P.M.5
  • 14
    • 33947470407 scopus 로고
    • Formation of a three-stranded polynucleotide molecule
    • FELSENFELD, G., DAVIES, D.R., and RICH, A. (1957). Formation of a three-stranded polynucleotide molecule. J. Am. Chem. Soc. 79, 2023-2024.
    • (1957) J. Am. Chem. Soc. , vol.79 , pp. 2023-2024
    • Felsenfeld, G.1    Davies, D.R.2    Rich, A.3
  • 15
    • 0041620247 scopus 로고    scopus 로고
    • TRACTS: A program to map oligopurine.oligopyrimidine and other binary DNA tracts
    • GAL, M., KATZ, T., OVADIA, A., and YAGIL, G. (2003). TRACTS: A program to map oligopurine.oligopyrimidine and other binary DNA tracts. Nucleic Acids Res. 31, 3682-3685.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3682-3685
    • Gal, M.1    Katz, T.2    Ovadia, A.3    Yagil, G.4
  • 16
    • 0007258271 scopus 로고    scopus 로고
    • blast.wustl.edu
    • GISH, W. (1996-2004). WU BLAST, blast.wustl.edu
    • (1996) WU BLAST
    • Gish, W.1
  • 17
    • 0034681285 scopus 로고    scopus 로고
    • Psoralen adducts induced by triplex-forming oligonucleotides are refractory to repair in HeLa cells
    • GUIEYSSE, A.L., PRASEUTH, D., GIOVANNANGELI, C., ASSELINE, U., and HÉLÈNE, C. (2000). Psoralen adducts induced by triplex-forming oligonucleotides are refractory to repair in HeLa cells. J. Mol. Biol. 296, 373-383.
    • (2000) J. Mol. Biol. , vol.296 , pp. 373-383
    • Guieysse, A.L.1    Praseuth, D.2    Giovannangeli, C.3    Asseline, U.4    Hélène, C.5
  • 19
  • 21
    • 0025762556 scopus 로고
    • Proton NMR and optical spectroscopic studies on the DNA triplex formed by d-A-(G-A)7-G and d-C-(T-C)7-T
    • KAN, L.S., CALLAHAN, D.E., TRAPANE, T.L., MILLER, P.S., TS'O, P.O., and HUANG, D.H. (1991). Proton NMR and optical spectroscopic studies on the DNA triplex formed by d-A-(G-A)7-G and d-C-(T-C)7-T. J. Biomol. Struct. Dyn. 8, 911-933.
    • (1991) J. Biomol. Struct. Dyn. , vol.8 , pp. 911-933
    • Kan, L.S.1    Callahan, D.E.2    Trapane, T.L.3    Miller, P.S.4    Ts'O, P.O.5    Huang, D.H.6
  • 23
    • 0034255524 scopus 로고    scopus 로고
    • High-frequency intrachromosomal gene conversion induced by triplex- Forming oligonucleotides microinjected into mouse cells
    • LUO, Z., MACRIS, M.A., FARUQI, A.F., and GLAZER, P.M. (2000). High-frequency intrachromosomal gene conversion induced by triplex- forming oligonucleotides microinjected into mouse cells. Proc. Natl. Acad. Sci. USA 97, 9003-9008.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 9003-9008
    • Luo, Z.1    Macris, M.A.2    Faruqi, A.F.3    Glazer, P.M.4
  • 26
    • 0037096781 scopus 로고    scopus 로고
    • Design of a novel triple helix-forming oligodeoxyribonucleotide directed to the major promoter of the c-myc gene
    • MCGUFFIE, E.M., and CATAPANO, C.V. (2002). Design of a novel triple helix-forming oligodeoxyribonucleotide directed to the major promoter of the c-myc gene. Nucleic Acids Res. 30, 2701-2709.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2701-2709
    • Mcguffie, E.M.1    Catapano, C.V.2
  • 27
    • 0034660876 scopus 로고    scopus 로고
    • Antigene and antiproliferative effects of a c-myc-targeting phosphorothioate triple helix-forming oligonucleotide in human leukemia cells
    • MCGUFFIE, E.M., PACHECO, D., CARBONE, G.M., and CATAPANO, C.V. (2000). Antigene and antiproliferative effects of a c-myc-targeting phosphorothioate triple helix-forming oligonucleotide in human leukemia cells. Cancer Res. 60, 3790-3799.
    • (2000) Cancer Res. , vol.60 , pp. 3790-3799
    • Mcguffie, E.M.1    Pacheco, D.2    Carbone, G.M.3    Catapano, C.V.4
  • 28
    • 0014414243 scopus 로고
    • Specificity of the three-stranded complex formation between double- Stranded DNA and single-stranded RNA containing repeating nucleotide sequences
    • MORGAN, A.R., and WELLS, R.D. (1968). Specificity of the three-stranded complex formation between double- stranded DNA and single-stranded RNA containing repeating nucleotide sequences. J. Mol. Biol. 37, 63-80.
    • (1968) J. Mol. Biol. , vol.37 , pp. 63-80
    • Morgan, A.R.1    Wells, R.D.2
  • 29
    • 0023619361 scopus 로고
    • Sequence-specific cleavage of double helical DNA by triple helix formation
    • MOSER, H.E., and DERVAN, P.B. (1987). Sequence-specific cleavage of double helical DNA by triple helix formation. Science 238, 645-650.
    • (1987) Science , vol.238 , pp. 645-650
    • Moser, H.E.1    Dervan, P.B.2
  • 30
    • 0033613078 scopus 로고    scopus 로고
    • Psoralen photo-cross-linking by triplex-forming oligonucleotides at multiple sites in the human rhodopsin gene
    • PERKINS, B.D., WENSEL, T.G., VASQUEZ, K.M., and WILSON, J.H. (1999). Psoralen photo-cross-linking by triplex-forming oligonucleotides at multiple sites in the human rhodopsin gene. Biochemistry 38, 12850-12859.
    • (1999) Biochemistry , vol.38 , pp. 12850-12859
    • Perkins, B.D.1    Wensel, T.G.2    Vasquez, K.M.3    Wilson, J.H.4
  • 32
    • 0025744428 scopus 로고
    • Evidence that a triplex-forming oligodeoxyribonucleotide binds to the c-myc promoter in HeLa cells, thereby reducing c-myc mRNA levels
    • POSTEL, E.H., FLINT, S.J., KESSLER, D.J., and HOGAN, M.E. (1991). Evidence that a triplex-forming oligodeoxyribonucleotide binds to the c-myc promoter in HeLa cells, thereby reducing c-myc mRNA levels. Proc. Natl. Acad. Sci. USA 88, 8227-8231.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 8227-8231
    • Postel, E.H.1    Flint, S.J.2    Kessler, D.J.3    Hogan, M.E.4
  • 33
    • 15544366698 scopus 로고    scopus 로고
    • Interplay between human high mobility group protein 1 and replication protein a on psoralen-cross-linked DNA
    • REDDY, M.C., CHRISTENSEN, J., and VASQUEZ, K.M. (2005). Interplay between human high mobility group protein 1 and replication protein A on psoralen-cross-linked DNA. Biochemistry 44, 4188-4195.
    • (2005) Biochemistry , vol.44 , pp. 4188-4195
    • Reddy, M.C.1    Christensen, J.2    Vasquez, K.M.3
  • 35
    • 0029131864 scopus 로고
    • Triple helix directed psoralen adducts induce a low frequency of recombination in an SV-40 shuttle vector
    • SANDOR, Z., and BREDBERG, A. (1995). Triple helix directed psoralen adducts induce a low frequency of recombination in an SV-40 shuttle vector. Biochem. Biophys. Acta 1263, 235-240.
    • (1995) Biochem. Biophys. Acta , vol.1263 , pp. 235-240
    • Sandor, Z.1    Bredberg, A.2
  • 36
    • 85047692457 scopus 로고    scopus 로고
    • The potential for gene repair via triple helix formation
    • SEIDMAN, M.M., and GLAZER, P.M. (2003). The potential for gene repair via triple helix formation. J. Clin. Invest, 112, 487-494.
    • (2003) J. Clin. Invest , vol.112 , pp. 487-494
    • Seidman, M.M.1    Glazer, P.M.2
  • 38
    • 0026348013 scopus 로고
    • Site-specific cleavage of human chromosome 4 mediated by triple-helix formation
    • STROBEL, S.A., DOUCETTE-STAMM, L.A., RIBA, L., HOUSMAN, D.E., and DERVAN, P.B. (1991). Site-specific cleavage of human chromosome 4 mediated by triple-helix formation. Science 254, 1639-1642.
    • (1991) Science , vol.254 , pp. 1639-1642
    • Strobel, S.A.1    Doucette-Stamm, L.A.2    Riba, L.3    Housman, D.E.4    Dervan, P.B.5
  • 39
    • 0032944997 scopus 로고    scopus 로고
    • Spectroscopic comparison of different DNA structures formed by oligonucleotides
    • SUN, X.G., CAO, E.H., HE, Y.J., and QIN, J.F. (1999). Spectroscopic comparison of different DNA structures formed by oligonucleotides. J. Biomol. Struct. Dyn. 16, 863-872.
    • (1999) J. Biomol. Struct. Dyn. , vol.16 , pp. 863-872
    • Sun, X.G.1    Cao, E.H.2    He, Y.J.3    Qin, J.F.4
  • 40
    • 0025953701 scopus 로고
    • Sequence-specific photo-induced cross-linking of the two strands of double-helical DNA by a psoralen covalently linked to a triple helix-forming oligonucleotide
    • TAKASUGI, M., GUENDOUZ, A., CHASSIGNOL, M., DECOUT, J.L., LHOMME, J., THUONG, N.T., and HÉLÈNE, C. (1991). Sequence-specific photo-induced cross-linking of the two strands of double-helical DNA by a psoralen covalently linked to a triple helix-forming oligonucleotide. Proc. Natl. Acad. Sci. USA 88, 5602-5606.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 5602-5606
    • Takasugi, M.1    Guendouz, A.2    Chassignol, M.3    Decout, J.L.4    Lhomme, J.5    Thuong, N.T.6    Hélène, C.7
  • 41
    • 20144366765 scopus 로고    scopus 로고
    • Human XPC-hHR23B interacts with XPA-RPA in the recognition of triplex-directed psoralen DNA interstrand crosslinks
    • THOMA, B.S., WAKASUGI, M., CHRISTENSEN, J., REDDY, M.C., and VASQUEZ, K.M. (2005). Human XPC-hHR23B interacts with XPA-RPA in the recognition of triplex-directed psoralen DNA interstrand crosslinks. Nucleic Acids Res. 33, 2993-3001.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2993-3001
    • Thoma, B.S.1    Wakasugi, M.2    Christensen, J.3    Reddy, M.C.4    Vasquez, K.M.5
  • 42
    • 0037197844 scopus 로고    scopus 로고
    • Human XPA and RPA DNA repair proteins participate in specific recognition of triplex-induced helical distortions
    • VASQUEZ, K.M., CHRISTENSEN, J., LI, L., FINCH, R.A., and GLAZER, P.M. (2002). Human XPA and RPA DNA repair proteins participate in specific recognition of triplex-induced helical distortions. Proc. Natl. Acad. Sci. USA 99, 5848-5853.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 5848-5853
    • Vasquez, K.M.1    Christensen, J.2    Li, L.3    Finch, R.A.4    Glazer, P.M.5
  • 43
    • 0035914386 scopus 로고    scopus 로고
    • Chromosome targeting at short polypurine sites by cationic triplex-forming oligonucleotides
    • VASQUEZ, K.M., DAGLE, J.M., WEEKS, D.L., and GLAZER, P.M. (2001a). Chromosome targeting at short polypurine sites by cationic triplex-forming oligonucleotides. J. Biol. Chem. 276, 38536-38541.
    • (2001) J. Biol. Chem. , vol.276 , pp. 38536-38541
    • Vasquez, K.M.1    Dagle, J.M.2    Weeks, D.L.3    Glazer, P.M.4
  • 44
    • 0036120314 scopus 로고    scopus 로고
    • Triplex-forming oligonucleotides: Principles and applications
    • VASQUEZ, K.M., and GLAZER, P.M. (2002). Triplex-forming oligonucleotides: principles and applications. Q. Rev. Biophys. 35, 89-107.
    • (2002) Q. Rev. Biophys. , vol.35 , pp. 89-107
    • Vasquez, K.M.1    Glazer, P.M.2
  • 46
    • 0033766239 scopus 로고    scopus 로고
    • Specific mutations induced by triplex-forming oligonucleotides in mice
    • VASQUEZ, K.M., NARAYANAN, L., and GLAZER, P.M. (2000). Specific mutations induced by triplex-forming oligonucleotides in mice. Science 290, 530-533.
    • (2000) Science , vol.290 , pp. 530-533
    • Vasquez, K.M.1    Narayanan, L.2    Glazer, P.M.3
  • 47
    • 0033557144 scopus 로고    scopus 로고
    • Chromosomal mutations induced by triplex-forming oligonucleotides in mammalian cells
    • VASQUEZ, K.M., WANG, G., HAVRE, P.A., and GLAZER, P.M. (1999). Chromosomal mutations induced by triplex-forming oligonucleotides in mammalian cells. Nucleic Acids Res. 27, 1176-1181.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1176-1181
    • Vasquez, K.M.1    Wang, G.2    Havre, P.A.3    Glazer, P.M.4
  • 48
    • 0029738829 scopus 로고    scopus 로고
    • High-efficiency triple-helix-mediated photo-cross-linking at a targeted site within a selectable mammalian gene
    • VASQUEZ, K.M., WENSEL, T.G., HOGAN, M.E., and WILSON, J.H. (1996). High-efficiency triple-helix-mediated photo-cross-linking at a targeted site within a selectable mammalian gene. Biochemistry 35, 10712-10719.
    • (1996) Biochemistry , vol.35 , pp. 10712-10719
    • Vasquez, K.M.1    Wensel, T.G.2    Hogan, M.E.3    Wilson, J.H.4
  • 49
    • 0031893854 scopus 로고    scopus 로고
    • Triplex-directed modification of genes and gene activity
    • VASQUEZ, K.M., and WILSON, J.H. (1998). Triplex-directed modification of genes and gene activity. Trends Biochem. Sci. 23, 4-9.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 4-9
    • Vasquez, K.M.1    Wilson, J.H.2
  • 50
    • 0028859271 scopus 로고
    • Targeted mutagenesis in mammalian cells mediated by intracellular triple helix formation
    • WANG, G., LEVY, D.D., SEIDMAN, M.M., and GLAZER, P.M. (1995). Targeted mutagenesis in mammalian cells mediated by intracellular triple helix formation. Mol. Cell. Biol. 15, 1759-1768.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 1759-1768
    • Wang, G.1    Levy, D.D.2    Seidman, M.M.3    Glazer, P.M.4
  • 51
    • 0030059301 scopus 로고    scopus 로고
    • Mutagenesis in mammalian cells induced by triple helix formation and transcription-coupled repair
    • WANG, G., SEIDMAN, M.M., and GLAZER, P.M. (1996). Mutagenesis in mammalian cells induced by triple helix formation and transcription-coupled repair. Science 271, 802-805.
    • (1996) Science , vol.271 , pp. 802-805
    • Wang, G.1    Seidman, M.M.2    Glazer, P.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.