-
1
-
-
0026690379
-
Redesigned purification yields a fully functional PutA protein dimer from Escherichia coli
-
Brown, E., and Wood, J. M. (1992) Redesigned purification yields a fully functional PutA protein dimer from Escherichia coli, J. Biol. Chem. 267, 13086-13092.
-
(1992)
J. Biol. Chem
, vol.267
, pp. 13086-13092
-
-
Brown, E.1
Wood, J.M.2
-
2
-
-
0019805440
-
Enzymatic properties of the purified putA protein from Salmonella typhimurium
-
Menzel, R., and Roth, J. (1981) Enzymatic properties of the purified putA protein from Salmonella typhimurium, J. Biol. Chem. 256, 9762-9766.
-
(1981)
J. Biol. Chem
, vol.256
, pp. 9762-9766
-
-
Menzel, R.1
Roth, J.2
-
3
-
-
0019454689
-
Regulation of genes for proline utilization in Salmonella typhimurium: Autogenous repression by the putA gene product
-
Menzel, R., and Roth, J. (1981) Regulation of genes for proline utilization in Salmonella typhimurium: Autogenous repression by the putA gene product, J. Mol. Biol. 148, 21-44.
-
(1981)
J. Mol. Biol
, vol.148
, pp. 21-44
-
-
Menzel, R.1
Roth, J.2
-
4
-
-
0034469730
-
Control of expression of divergent Pseudomonas putida put promoters for proline catabolism
-
Vílchez, S., Manzanera, M., and Ramos, J. (2000) Control of expression of divergent Pseudomonas putida put promoters for proline catabolism, Appl. Environ. Microbiol. 66, 5221-5225.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 5221-5225
-
-
Vílchez, S.1
Manzanera, M.2
Ramos, J.3
-
5
-
-
0037312937
-
Structure of the proline dehydrogenase domain of the multifunctional PutA flavoprotein
-
Lee, Y. H., Nadaraia, S., Gu, D., Becker, D. F., and Tanner, J. J. (2003) Structure of the proline dehydrogenase domain of the multifunctional PutA flavoprotein, Nat. Struct. Biol. 10, 109-114.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 109-114
-
-
Lee, Y.H.1
Nadaraia, S.2
Gu, D.3
Becker, D.F.4
Tanner, J.J.5
-
6
-
-
0028117603
-
Sequence analysis identifies the proline dehydrogenase and pyrroline-5-carboxylate dehydrogenase domains of the multifunctional Escherichia coli PutA protein
-
Ling, M., Allen, S. W., and Wood, J. M. (1994) Sequence analysis identifies the proline dehydrogenase and pyrroline-5-carboxylate dehydrogenase domains of the multifunctional Escherichia coli PutA protein, J. Mol. Biol. 245, 950-956.
-
(1994)
J. Mol. Biol
, vol.245
, pp. 950-956
-
-
Ling, M.1
Allen, S.W.2
Wood, J.M.3
-
7
-
-
3843135240
-
Identification and characterization of the DNA-binding domain of the multifunctional PutA flavoenzyme
-
Gu, D., Zhou, Y., Kallhoff, V., Baban, B., Tanner, J. J., and Becker, D. F. (2004) Identification and characterization of the DNA-binding domain of the multifunctional PutA flavoenzyme, J. Biol. Chem. 279, 31171-31176.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 31171-31176
-
-
Gu, D.1
Zhou, Y.2
Kallhoff, V.3
Baban, B.4
Tanner, J.J.5
Becker, D.F.6
-
8
-
-
0023035989
-
Solubilization and functional reconstitution of the proline transport system of Escherichia coli
-
Chen, C.-C., and Wilson, T. H. (1986) Solubilization and functional reconstitution of the proline transport system of Escherichia coli, J. Biol. Chem. 261, 2599-2604.
-
(1986)
J. Biol. Chem
, vol.261
, pp. 2599-2604
-
-
Chen, C.-C.1
Wilson, T.H.2
-
9
-
-
33751088044
-
Crystal structures of the DNA-binding domain of Escherichia coli proline utilization A flavoprotein and analysis of the role of Lys9 in DNA recognition
-
Larson, J. D., Jenkins, J. L., Schuermann, J. P., Zhou, Y., Becker, D. F., and Tanner, J. J. (2006) Crystal structures of the DNA-binding domain of Escherichia coli proline utilization A flavoprotein and analysis of the role of Lys9 in DNA recognition, Protein Sci. 15, 2630-2641.
-
(2006)
Protein Sci
, vol.15
, pp. 2630-2641
-
-
Larson, J.D.1
Jenkins, J.L.2
Schuermann, J.P.3
Zhou, Y.4
Becker, D.F.5
Tanner, J.J.6
-
10
-
-
0005034336
-
Membrane association of proline dehydrogenase in Escherichia coli is redox dependent
-
Wood, J. (1987) Membrane association of proline dehydrogenase in Escherichia coli is redox dependent, Proc. Natl. Acad. Sci. U.S.A. 84, 373-377.
-
(1987)
Proc. Natl. Acad. Sci. U.S.A
, vol.84
, pp. 373-377
-
-
Wood, J.1
-
11
-
-
0027419533
-
Conformational change and membrane association of the PutA protein are coincident with reduction of its FAD cofactor by proline
-
Brown, E. D., and Wood, J. M. (1993) Conformational change and membrane association of the PutA protein are coincident with reduction of its FAD cofactor by proline, J. Biol. Chem. 268, 8972-8979.
-
(1993)
J. Biol. Chem
, vol.268
, pp. 8972-8979
-
-
Brown, E.D.1
Wood, J.M.2
-
12
-
-
0032852996
-
Regulation of flavin dehydrogenase compartmentalization: Requirements for PutA-membrane association in Salmonella typhimurium
-
Surber, M. W., and Maloy, S. (1999) Regulation of flavin dehydrogenase compartmentalization: Requirements for PutA-membrane association in Salmonella typhimurium, Biochim. Biophys. Acta 1421, 5-18.
-
(1999)
Biochim. Biophys. Acta
, vol.1421
, pp. 5-18
-
-
Surber, M.W.1
Maloy, S.2
-
13
-
-
5444257841
-
Regulation of PutA-membrane associations by flavin adenine dinucleotide reduction
-
Zhang, W., Zhou, Y., and Becker, D. F. (2004) Regulation of PutA-membrane associations by flavin adenine dinucleotide reduction, Biochemistry 43, 13165-13174.
-
(2004)
Biochemistry
, vol.43
, pp. 13165-13174
-
-
Zhang, W.1
Zhou, Y.2
Becker, D.F.3
-
14
-
-
0030976040
-
Regulation of gene expression by repressor localization: Biochemical evidence that membrane and DNA binding by the PutA protein are mutually exclusive
-
Muro-Pastor, A. M., Ostrovsky, P., and Maloy, S. (1997) Regulation of gene expression by repressor localization: Biochemical evidence that membrane and DNA binding by the PutA protein are mutually exclusive, J. Bacteriol. 179, 2788-2791.
-
(1997)
J. Bacteriol
, vol.179
, pp. 2788-2791
-
-
Muro-Pastor, A.M.1
Ostrovsky, P.2
Maloy, S.3
-
15
-
-
4744340116
-
Structures of the Escherichia coli PutA proline dehydrogenase domain in complex with competitive inhibitors
-
Zhang, M., White, T. A., Schuermann, J. P., Baban, B. A., Becker, D. F., and Tanner, J. J. (2004) Structures of the Escherichia coli PutA proline dehydrogenase domain in complex with competitive inhibitors, Biochemistry 43, 12539-12548.
-
(2004)
Biochemistry
, vol.43
, pp. 12539-12548
-
-
Zhang, M.1
White, T.A.2
Schuermann, J.P.3
Baban, B.A.4
Becker, D.F.5
Tanner, J.J.6
-
16
-
-
0029015426
-
Metaphosphate-dependent phosphorylation of riboflavin to FMN by Corynebacterium ammoniagenes
-
Nakagawa, S., Hagihara, T., Fujio, T., and Aisaka, K. (1995) Metaphosphate-dependent phosphorylation of riboflavin to FMN by Corynebacterium ammoniagenes, Appl. Microbiol. Biotechnol. 43, 325-329.
-
(1995)
Appl. Microbiol. Biotechnol
, vol.43
, pp. 325-329
-
-
Nakagawa, S.1
Hagihara, T.2
Fujio, T.3
Aisaka, K.4
-
17
-
-
0032493472
-
Proposed steady-state kinetic mechanism for Corynebacterium ammoniagenes FAD synthetase produced by Escherichia coli
-
Efimov, I., Kuusk, V., Zhang, X., and McIntire, W. S. (1998) Proposed steady-state kinetic mechanism for Corynebacterium ammoniagenes FAD synthetase produced by Escherichia coli, Biochemistry 37, 9716-9723.
-
(1998)
Biochemistry
, vol.37
, pp. 9716-9723
-
-
Efimov, I.1
Kuusk, V.2
Zhang, X.3
McIntire, W.S.4
-
18
-
-
0037881834
-
Flavin redox state triggers conformational changes in the PutA protein from Escherichia coli
-
Zhu, W., and Becker, D. F. (2003) Flavin redox state triggers conformational changes in the PutA protein from Escherichia coli. Biochemistry 42, 5469-5477.
-
(2003)
Biochemistry
, vol.42
, pp. 5469-5477
-
-
Zhu, W.1
Becker, D.F.2
-
19
-
-
29244452111
-
Kinetic and thermodynamic analysis of Bradyrhizobium japonicum PutA-membrane associations
-
Zhang, W., Krishnan, N., and Becker, D. F. (2006) Kinetic and thermodynamic analysis of Bradyrhizobium japonicum PutA-membrane associations, Arch. Biochem. Biophys. 445, 174-183.
-
(2006)
Arch. Biochem. Biophys
, vol.445
, pp. 174-183
-
-
Zhang, W.1
Krishnan, N.2
Becker, D.F.3
-
20
-
-
4744361474
-
Detection of L-lactate in polyethylene glycol solutions confirms the identity of the active-site ligand in a proline dehydrogenase structure
-
Zhang, M., and Tanner, J. J. (2004) Detection of L-lactate in polyethylene glycol solutions confirms the identity of the active-site ligand in a proline dehydrogenase structure. Acta Crystallogr. D60, 985-986.
-
(2004)
Acta Crystallogr
, vol.D60
, pp. 985-986
-
-
Zhang, M.1
Tanner, J.J.2
-
21
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode, Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
22
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination, Acta Crystallogr. D54, 905-921.
-
(1998)
Acta Crystallogr
, vol.D54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
23
-
-
0035182073
-
Use of TLS parameters to model anisotropic displacements in macromolecular refinement
-
Winn, M. D., Isupov, M. N., and Murshudov, G. N. (2001) Use of TLS parameters to model anisotropic displacements in macromolecular refinement, Acta Crystallogr. D57, 122-133.
-
(2001)
Acta Crystallogr
, vol.D57
, pp. 122-133
-
-
Winn, M.D.1
Isupov, M.N.2
Murshudov, G.N.3
-
24
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T. A., Zou, J.-Y., Cowan, S. W., and Kjeldgaard, M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models, Acta Crystallogr. A47, 110-119.
-
(1991)
Acta Crystallogr
, vol.A47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
25
-
-
24944562717
-
Exploring the proline-dependent conformational change in the multifunctional PutA flavoprotein by tryptophan fluorescence spectroscopy
-
Zhu, W., and Becker, D. F. (2005) Exploring the proline-dependent conformational change in the multifunctional PutA flavoprotein by tryptophan fluorescence spectroscopy, Biochemistry 44, 12297-12306.
-
(2005)
Biochemistry
, vol.44
, pp. 12297-12306
-
-
Zhu, W.1
Becker, D.F.2
-
26
-
-
0035901522
-
Redox properties of the PutA protein from Escherichia coli and the influence of the flavin redox state on PutA-DNA interactions
-
Becker, D. F., and Thomas, E. A. (2001) Redox properties of the PutA protein from Escherichia coli and the influence of the flavin redox state on PutA-DNA interactions, Biochemistry 40, 4714-4722.
-
(2001)
Biochemistry
, vol.40
, pp. 4714-4722
-
-
Becker, D.F.1
Thomas, E.A.2
-
27
-
-
0037150106
-
Electrochemical and functional characterization of the proline dehydrogenase domain of the PutA flavoprotein from Escherichia coli
-
Vinod, M. P., Bellur, P., and Becker, D. F. (2002) Electrochemical and functional characterization of the proline dehydrogenase domain of the PutA flavoprotein from Escherichia coli, Biochemistry 41, 6525-6532.
-
(2002)
Biochemistry
, vol.41
, pp. 6525-6532
-
-
Vinod, M.P.1
Bellur, P.2
Becker, D.F.3
-
28
-
-
4344640338
-
Probing a hydrogen bond pair and the FAD redox properties in the proline dehydrogenase domain of Escherichia coli PutA
-
Baban, B. A., Vinod, M. P., Tanner, J. J., and Becker, D. F. (2004) Probing a hydrogen bond pair and the FAD redox properties in the proline dehydrogenase domain of Escherichia coli PutA, Biochem. Biophys. Acta 1701, 49-59.
-
(2004)
Biochem. Biophys. Acta
, vol.1701
, pp. 49-59
-
-
Baban, B.A.1
Vinod, M.P.2
Tanner, J.J.3
Becker, D.F.4
-
29
-
-
0019300690
-
An anaerobic spectroelectrochemical cell for studying the spectral and redox properties of flavoproteins
-
Stankovich, M. T. (1980) An anaerobic spectroelectrochemical cell for studying the spectral and redox properties of flavoproteins, Anal. Biochem. 109, 295-308.
-
(1980)
Anal. Biochem
, vol.109
, pp. 295-308
-
-
Stankovich, M.T.1
-
30
-
-
0034630369
-
Characterization of the surfaces generated by liposome binding to the modified dextran matrix of a surface plasmon resonance sensor chip
-
Erb, E. M., Chen, X., Allen, S., Roberts, C. J., Tendler, S. J. B., Davies, M. C., and Forsen, S. (2000) Characterization of the surfaces generated by liposome binding to the modified dextran matrix of a surface plasmon resonance sensor chip, Anal. Biochem. 280, 29-35.
-
(2000)
Anal. Biochem
, vol.280
, pp. 29-35
-
-
Erb, E.M.1
Chen, X.2
Allen, S.3
Roberts, C.J.4
Tendler, S.J.B.5
Davies, M.C.6
Forsen, S.7
-
31
-
-
0032725979
-
Crystal structure of reduced thioredoxin reductase from Escherichia coli: Structural flexibility in the isoalloxazine ring of the flavin adenine dinucleotide cofactor
-
Lennon, B. W., Williams, C. H., Jr., and Ludwig, M. L. (1999) Crystal structure of reduced thioredoxin reductase from Escherichia coli: Structural flexibility in the isoalloxazine ring of the flavin adenine dinucleotide cofactor, Protein Sci. 8, 2366-2379.
-
(1999)
Protein Sci
, vol.8
, pp. 2366-2379
-
-
Lennon, B.W.1
Williams Jr., C.H.2
Ludwig, M.L.3
-
32
-
-
0028811666
-
Chemical modification of the N-10 ribityl side chain of flavins. Effects on properties of flavoprotein disulfide oxidoreductases
-
Murthy, Y. V., and Massey, V. (1995) Chemical modification of the N-10 ribityl side chain of flavins. Effects on properties of flavoprotein disulfide oxidoreductases, J. Biol. Chem. 270, 28586-28594.
-
(1995)
J. Biol. Chem
, vol.270
, pp. 28586-28594
-
-
Murthy, Y.V.1
Massey, V.2
-
33
-
-
0018801593
-
Conformations and electronic structures of oxidized and reduced isoalloxazine
-
Dixon, D. A., Lindner, D. L., Branchaud, B., and Lipscomb, W. N. (1979) Conformations and electronic structures of oxidized and reduced isoalloxazine. Biochemistry 18, 5770-5775.
-
(1979)
Biochemistry
, vol.18
, pp. 5770-5775
-
-
Dixon, D.A.1
Lindner, D.L.2
Branchaud, B.3
Lipscomb, W.N.4
-
34
-
-
0021759008
-
Carbon-13 nuclear magnetic resonance study on the dynamics of the conformation of reduced flavin
-
Moonen, C. T., Vervoort, J., and Muller, F. (1984) Carbon-13 nuclear magnetic resonance study on the dynamics of the conformation of reduced flavin, Biochemistry 23, 4868-4872.
-
(1984)
Biochemistry
, vol.23
, pp. 4868-4872
-
-
Moonen, C.T.1
Vervoort, J.2
Muller, F.3
-
35
-
-
0029903531
-
A theoretical study of the structures of flavin in different oxidation and protonation states
-
Zheng, Y. J., and Ornstein, R. L. (1996) A theoretical study of the structures of flavin in different oxidation and protonation states, J. Am. Chem. Soc. 118, 9402-9408.
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 9402-9408
-
-
Zheng, Y.J.1
Ornstein, R.L.2
-
36
-
-
0024421234
-
Substrate binding and catalysis by glutathione reductase as derived from refined enzyme: Substrate crystal structures at 2 Å resolution
-
Karplus, P. A., and Schulz, G. E. (1989) Substrate binding and catalysis by glutathione reductase as derived from refined enzyme: Substrate crystal structures at 2 Å resolution, J. Mol. Biol. 210, 163-180.
-
(1989)
J. Mol. Biol
, vol.210
, pp. 163-180
-
-
Karplus, P.A.1
Schulz, G.E.2
-
37
-
-
0025816177
-
Refined crystal structure of lipoamide dehydrogenase from Azotobacter vinelandii at 2.2 Å resolution. A comparison with the structure of glutathione reductase
-
Mattevi, A., Schierbeek, A. J., and Hol, W. G. (1991) Refined crystal structure of lipoamide dehydrogenase from Azotobacter vinelandii at 2.2 Å resolution. A comparison with the structure of glutathione reductase, J. Mol. Biol. 220, 975-994.
-
(1991)
J. Mol. Biol
, vol.220
, pp. 975-994
-
-
Mattevi, A.1
Schierbeek, A.J.2
Hol, W.G.3
-
38
-
-
0001143446
-
Structure of the medium-chain acyl-CoA dehydrogenase from pig liver mitochondria at 3-Å resolution
-
Kim, J. J., and Wu, J. (1988) Structure of the medium-chain acyl-CoA dehydrogenase from pig liver mitochondria at 3-Å resolution, Proc. Natl. Acad. Sci. U.S.A. 85, 6677-6681.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A
, vol.85
, pp. 6677-6681
-
-
Kim, J.J.1
Wu, J.2
-
39
-
-
0027304244
-
Crystal structures of medium-chain acyl-CoA dehydrogenase from pig liver mitochondria with and without substrate
-
Kim, J. J., Wang, M., and Paschke, R. (1993) Crystal structures of medium-chain acyl-CoA dehydrogenase from pig liver mitochondria with and without substrate, Proc. Natl. Acad. Sci. U.S.A. 90, 7523-7527.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A
, vol.90
, pp. 7523-7527
-
-
Kim, J.J.1
Wang, M.2
Paschke, R.3
-
40
-
-
0029992657
-
Three-dimensional structure of human electron transfer flavoprotein to 2.1-Å resolution
-
Roberts, D. L., Frerman, F. E., and Kim, J. J. (1996) Three-dimensional structure of human electron transfer flavoprotein to 2.1-Å resolution, Proc. Natl. Acad. Sci. U.S.A. 93, 14355-14360.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A
, vol.93
, pp. 14355-14360
-
-
Roberts, D.L.1
Frerman, F.E.2
Kim, J.J.3
-
41
-
-
0033524484
-
Mechanism of activation of acyl-CoA substrates by medium chain acyl-CoA dehydrogenase: Interaction of the thioester carbonyl with the flavin adenine dinucleotide ribityl side chain
-
Engst, S., Vock, P., Wang, M., Kim, J. J., and Ghisla, S. (1999) Mechanism of activation of acyl-CoA substrates by medium chain acyl-CoA dehydrogenase: Interaction of the thioester carbonyl with the flavin adenine dinucleotide ribityl side chain, Biochemistry 38, 257-267.
-
(1999)
Biochemistry
, vol.38
, pp. 257-267
-
-
Engst, S.1
Vock, P.2
Wang, M.3
Kim, J.J.4
Ghisla, S.5
-
42
-
-
79952608525
-
Accurate bond and angle parameters for X-ray protein structure refinement
-
Engh, R. A., and Huber, R. (1991) Accurate bond and angle parameters for X-ray protein structure refinement, Acta Crystallogr. A47, 392-400.
-
(1991)
Acta Crystallogr
, vol.A47
, pp. 392-400
-
-
Engh, R.A.1
Huber, R.2
-
43
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) PROCHECK: A program to check the stereochemical quality of protein structures, J. Appl. Crystallogr. 26, 283-291.
-
(1993)
J. Appl. Crystallogr
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
|