The Sulfolobus database

Nucleic Acids Research

Volumn 35, Issue SUPPL. 1, 2007, Pages

  Brügger, Kim ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ARCHAEBACTERIUM; ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL GENOME; CHROMOSOME ANALYSIS; COMPUTER INTERFACE; CONTROLLED STUDY; CRENARCHAEOTA; GENBANK; GENETIC IDENTIFICATION; GENETIC MODEL; INFORMATION PROCESSING; NONHUMAN; PRIORITY JOURNAL; REGNUM; SEQUENCE ANALYSIS; SEQUENCE DATABASE; SULFOLOBUS; SULFOLOBUS DATABASE; WEB BROWSER;

CHROMOSOMES, ARCHAEAL; DATABASES, NUCLEIC ACID; GENES, ARCHAEAL; GENOME, ARCHAEAL; INTERNET; SULFOLOBUS; USER-COMPUTER INTERFACE;

CRENARCHAEOTA; SULFOLOBUS;

EID: 33846120422     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl847     Document Type: Article

References (18)

1. Lundgren,M. and Bernander,R. (2005) Archaeal cell cycle progress. Curr. Opin. Microbiol., 8, 662-668.
2. Duggin,I.G. and Bell,S.D. (2006) The chromosome replication machinery of the archaeon Sulfolobus solfataricus. J. Biol. Chem., 281, 15029-15032.
3. White,M.F. (2003) Archaeal DNA repair: Paradigms and puzzles. Biochem. Soc. Trans., 31, 690-693.
4. Grote,M., Dijk,J. and Reinhardt,R. (1986) Ribosomal and DNA binding proteins of the thermoacidophilic archaebacterium Sulfolobus acidocaldarius. Biochim. Biophys. Acta., 873, 405-413.
5. Chen,L., Brugger,K., Skovgaard,M., Redder,P., She,Q., Torarinsson,E., Greve,B., Awayez,M., Zibat,A., Klenk,H.P. et al. (2005) The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. J. Bacteriol., 187, 4992-4999.
6. She,Q., Singh,R.K., Confalonieri,F., Zivanovic,Y., Allard,G., Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., De Moors,A. et al. (2001) The complete genome of the crenarchaeon Sulfolobus solfataricus P2. Proc. Natl Acad. Sci. USA, 98, 7835-7840.
7. Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A. et al. (2001) Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7. DNA Res., 8, 123-140.
8. Prangishvili,D. and Garrett,R.A. (2005) Viruses of hyperthermophilic Crenarchaea. Trends Microbiol., 13, 535-542.
9. Liolios,K., Tavernarakis,N., Hugenholtz,P. and Kyrpides,N.C. (2006) The Genomes On Line Database (GOLD) v.2: A monitor of genome projects worldwide. Nucleic Acids Res., 34, D332-D334.
10. Brügger,K., Redder,P. and Skovgaard,M. (2003) MUTAGEN: Multi-user tool for annotating genomes. Bioinformatics, 19, 2480-2481.
11. Benson,D.A., Karsch-Mzrachi,I., Lipman,D.J., Ostell,J. and Wheeler,D.L. (2006) GenBank. Nucleic Acids Res., 34, D16-D20.
12. Tatusov,R.L., Fedorova,N.D., Jackson,J.D., Jacobs,A.R., Kiryutin,B., Koonin,E.V., Krylov,D.M., Mazumder,R., Mekhedov,S.L., Nikolskaya,A.N. et al. (2003) The COG database: An updated version includes eukaryotes. BMC Bioinformatics, 4, 41.
13. Wu,C.H., Apweiler,R., Bairoch,A., Natale,D.A., Barker,W.C., Boeckmann,B., Ferro,S., Gasteiger,E., Huang,H., Lopez,R. et al. (2006) The Universal Protein Resource (UniProt): An expanding universe of protein information. Nucleic Acids Res., 34, D187-D191.
14. Finn,R.D., Mistry,J., Schuster-Bockler,B., Griffiths-Jones,S., Hollich,V., Lassmann,T., Moxon,S., Marshall,M., Khanna,A., Durbin,R. et al. (2006) Pfam: Clans, web tools and services. Nucleic Acids Res., 34, D247-D251.
15. Kanehisa,M., Goto,S., Hattori,M., Aoki-Kinoshita,K.F., Itoh,M., Kawashima,S., Katayama,T., Araki,M. and Hirakawa,M. (2006) From genomics to chemical genomics: New developments in KEGG. Nucleic Acids Res., 34, D354-D357.
16. Krogh,A., Larsson,B., von Heijne,G. and Sonnhammer,E.L. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol., 305, 567-580.
17. Bendtsen,J.D., Nielsen,H., von Heijne,G. and Brunak,S. (2004) Improved prediction of signal peptides: SignallP 3.0. J. Mol. Biol., 340, 783-795.
18. Enright,A.J., Kunin,V. and Ouzounis,C.A. (2003) Protein families and TRIBES in genome sequence space. Nucleic Acids Res., 31, 4632-4638.