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Volumn 57, Issue 1, 2007, Pages 82-88

Identification of putative DnaN-binding motifs in plasmid replication initiation proteins

Author keywords

DNA Polymerase III; DNA replication initiation protein; DnaN; DnaN binding; Initiation of DNA replication; Peptide; Plasmid

Indexed keywords

DNA DIRECTED DNA POLYMERASE GAMMA; HEXAPEPTIDE; PENTAPEPTIDE; PROTEIN TRFA; REPLISOME; UNCLASSIFIED DRUG;

EID: 33845968869     PISSN: 0147619X     EISSN: 10959890     Source Type: Journal    
DOI: 10.1016/j.plasmid.2006.07.005     Document Type: Article
Times cited : (6)

References (17)
  • 1
    • 0242389787 scopus 로고    scopus 로고
    • Structural basis for recruitment of translesion DNA polymerase Pol IV/DinB to the beta-clamp
    • Bunting K.A., Roe S.M., and Pearl L.H. Structural basis for recruitment of translesion DNA polymerase Pol IV/DinB to the beta-clamp. EMBO J. 22 (2003) 5883-5892
    • (2003) EMBO J. , vol.22 , pp. 5883-5892
    • Bunting, K.A.1    Roe, S.M.2    Pearl, L.H.3
  • 2
    • 0037628613 scopus 로고    scopus 로고
    • Controlled initiation of chromosomal replication in Escherichia coli requires functional Hda protein
    • Camara J.E., Skarstad K., and Crooke E. Controlled initiation of chromosomal replication in Escherichia coli requires functional Hda protein. J. Bacteriol. 185 (2003) 3244-3248
    • (2003) J. Bacteriol. , vol.185 , pp. 3244-3248
    • Camara, J.E.1    Skarstad, K.2    Crooke, E.3
  • 3
    • 0035949599 scopus 로고    scopus 로고
    • A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems
    • Dalrymple B.P., Kongsuwan K., Wijffels G., Dixon N.E., and Jennings P.A. A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems. Proc. Natl. Acad. Sci. USA 98 (2001) 11627-11632
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 11627-11632
    • Dalrymple, B.P.1    Kongsuwan, K.2    Wijffels, G.3    Dixon, N.E.4    Jennings, P.A.5
  • 4
    • 0347709578 scopus 로고    scopus 로고
    • Towards an understanding of protein-protein interaction network hierarchies-bioinformatics analysis of DnaN (β)-binding peptide motifs in members of protein families interacting with the eubacterial processivity clamp, the β subunit of DNA polymerase III
    • Dalrymple B.P., Wijffels G., Kongsuwan K., and Jennings P.A. Towards an understanding of protein-protein interaction network hierarchies-bioinformatics analysis of DnaN (β)-binding peptide motifs in members of protein families interacting with the eubacterial processivity clamp, the β subunit of DNA polymerase III. Conf. Res. Pract. Inf. Technol. 19 (2003) 153-159
    • (2003) Conf. Res. Pract. Inf. Technol. , vol.19 , pp. 153-159
    • Dalrymple, B.P.1    Wijffels, G.2    Kongsuwan, K.3    Jennings, P.A.4
  • 6
    • 20444420519 scopus 로고    scopus 로고
    • A bipartite polymerase-processivity factor interaction: only the internal β binding site of the α subunit is required for processive replication by the DNA polymerase III holoenzyme
    • Dohrmann P.R., and McHenry C.S. A bipartite polymerase-processivity factor interaction: only the internal β binding site of the α subunit is required for processive replication by the DNA polymerase III holoenzyme. J. Mol. Biol. 350 (2005) 228-239
    • (2005) J. Mol. Biol. , vol.350 , pp. 228-239
    • Dohrmann, P.R.1    McHenry, C.S.2
  • 7
    • 4344661025 scopus 로고    scopus 로고
    • Twenty years of the pPS10 replicon: insights on the molecular mechanism for the activation of DNA replication in iteron-containing bacterial plasmids
    • Giraldo R., and Fernandez-Tresguerres M.E. Twenty years of the pPS10 replicon: insights on the molecular mechanism for the activation of DNA replication in iteron-containing bacterial plasmids. Plasmid 52 (2004) 69-83
    • (2004) Plasmid , vol.52 , pp. 69-83
    • Giraldo, R.1    Fernandez-Tresguerres, M.E.2
  • 8
    • 0035422651 scopus 로고    scopus 로고
    • Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli
    • Kato J., and Katayama T. Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli. EMBO J. 20 (2001) 4253-4262
    • (2001) EMBO J. , vol.20 , pp. 4253-4262
    • Kato, J.1    Katayama, T.2
  • 9
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment
    • Katoh K., Kuma K., Toh H., and Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33 (2005) 511-518
    • (2005) Nucleic Acids Res , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 10
    • 0034595501 scopus 로고    scopus 로고
    • Enhanced genome annotation using structural profiles in the program 3D-PSSM
    • Kelley L.A., MacCallum R.M., and Sternberg M.J. Enhanced genome annotation using structural profiles in the program 3D-PSSM. J. Mol. Biol. 299 (2000) 499-520
    • (2000) J. Mol. Biol. , vol.299 , pp. 499-520
    • Kelley, L.A.1    MacCallum, R.M.2    Sternberg, M.J.3
  • 11
    • 0037334858 scopus 로고    scopus 로고
    • Identification of a novel membrane-associated gene product that suppresses toxicity of a TrfA peptide from plasmid RK2 and its relationship to the DnaA host initiation protein
    • Kim P.D., Banack T., Lerman D.M., Tracy J.C., Camara J.E., Crooke E., Oliver D., and Firshein W. Identification of a novel membrane-associated gene product that suppresses toxicity of a TrfA peptide from plasmid RK2 and its relationship to the DnaA host initiation protein. J. Bacteriol. 185 (2003) 1817-1824
    • (2003) J. Bacteriol. , vol.185 , pp. 1817-1824
    • Kim, P.D.1    Banack, T.2    Lerman, D.M.3    Tracy, J.C.4    Camara, J.E.5    Crooke, E.6    Oliver, D.7    Firshein, W.8
  • 12
    • 33746621720 scopus 로고    scopus 로고
    • The plasmid RK2 replication initiator protein (TrfA) binds to the sliding clamp β subunit of DNA Polymerase III: implication for the toxicity of a peptide derived from the amino-terminal portion of 33-kDa TrfA
    • Kongsuwan K., Josh P., Picault M.A., Wijffels G., and Dalrymple B.P. The plasmid RK2 replication initiator protein (TrfA) binds to the sliding clamp β subunit of DNA Polymerase III: implication for the toxicity of a peptide derived from the amino-terminal portion of 33-kDa TrfA. J. Bacteriol. 188 (2006) 5501-5509
    • (2006) J. Bacteriol. , vol.188 , pp. 5501-5509
    • Kongsuwan, K.1    Josh, P.2    Picault, M.A.3    Wijffels, G.4    Dalrymple, B.P.5
  • 13
    • 2442504231 scopus 로고    scopus 로고
    • Interaction of the sliding clamp beta-subunit and Hda, a DnaA-related protein
    • Kurz M., Dalrymple B., Wijffels G., and Kongsuwan K. Interaction of the sliding clamp beta-subunit and Hda, a DnaA-related protein. J. Bacteriol. 186 (2004) 3508-3515
    • (2004) J. Bacteriol. , vol.186 , pp. 3508-3515
    • Kurz, M.1    Dalrymple, B.2    Wijffels, G.3    Kongsuwan, K.4
  • 14
    • 0037178275 scopus 로고    scopus 로고
    • Damage-repair error-prone polymerases of eubacteria: association with mobile genome elements
    • Permina E.A., Mironov A.A., and Gelfand M.S. Damage-repair error-prone polymerases of eubacteria: association with mobile genome elements. Gene 293 (2002) 133-140
    • (2002) Gene , vol.293 , pp. 133-140
    • Permina, E.A.1    Mironov, A.A.2    Gelfand, M.S.3
  • 16
    • 0032579330 scopus 로고    scopus 로고
    • A novel Bacillus natto plasmid pLS32 capable of replication in Bacillus subtilis
    • Tanaka T., and Ogura M. A novel Bacillus natto plasmid pLS32 capable of replication in Bacillus subtilis. FEBS Lett. 422 (1998) 243-246
    • (1998) FEBS Lett. , vol.422 , pp. 243-246
    • Tanaka, T.1    Ogura, M.2
  • 17
    • 0036224773 scopus 로고    scopus 로고
    • Phage P4 origin-binding domain structure reveals a mechanism for regulation of DNA-binding activity by homo- and heterodimerization of winged helix proteins
    • Yeo H.J., Ziegelin G., Korolev S., Calendar R., Lanka E., and Waksman G. Phage P4 origin-binding domain structure reveals a mechanism for regulation of DNA-binding activity by homo- and heterodimerization of winged helix proteins. Mol. Microbiol. 43 (2002) 855-867
    • (2002) Mol. Microbiol. , vol.43 , pp. 855-867
    • Yeo, H.J.1    Ziegelin, G.2    Korolev, S.3    Calendar, R.4    Lanka, E.5    Waksman, G.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.