-
1
-
-
28844501027
-
Overexpression of the Hda DnaA-related protein in Escherichia coli inhibits multiplication, affects membrane permeability, and induces the SOS response
-
Banack, T., N. Clauson, N. Ogbaa, J. Villar, D. Olver, and W. Firshein. 2005. Overexpression of the Hda DnaA-related protein in Escherichia coli inhibits multiplication, affects membrane permeability, and induces the SOS response. J. Bacteriol. 187:8507-8510.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 8507-8510
-
-
Banack, T.1
Clauson, N.2
Ogbaa, N.3
Villar, J.4
Olver, D.5
Firshein, W.6
-
2
-
-
0041922662
-
Intracellular expression of peptide fusions for demonstration of protein essentiality in bacteria
-
Benson, R. E., E. B. Gottlin, D. J. Christensen, and P. T. Hamilton. 2003. Intracellular expression of peptide fusions for demonstration of protein essentiality in bacteria. Antimicrob. Agents Chemother. 47:2875-2881.
-
(2003)
Antimicrob. Agents Chemother.
, vol.47
, pp. 2875-2881
-
-
Benson, R.E.1
Gottlin, E.B.2
Christensen, D.J.3
Hamilton, P.T.4
-
3
-
-
0242389787
-
Structural basis for recruitment of translesion DNA polymerase Pol IV/DinB to the β-clamp
-
Bunting, K. A., S. M. Roe, and L. H. Pearl. 2003. Structural basis for recruitment of translesion DNA polymerase Pol IV/DinB to the β-clamp. EMBO J. 22:5883-5892.
-
(2003)
EMBO J.
, vol.22
, pp. 5883-5892
-
-
Bunting, K.A.1
Roe, S.M.2
Pearl, L.H.3
-
4
-
-
0346654081
-
Structural and biochemical analysis of sliding clamp/ligand interactions suggest a competitive between replicative and translesion polymerases
-
Burnouf, D. Y., V. Olieric, J. Wagner, S. Fujii, J. Reinbolt, R. P. Fuchs, and P. Dumas. 2004. Structural and biochemical analysis of sliding clamp/ligand interactions suggest a competitive between replicative and translesion polymerases. J. Mol. Biol. 30:1187-1197.
-
(2004)
J. Mol. Biol.
, vol.30
, pp. 1187-1197
-
-
Burnouf, D.Y.1
Olieric, V.2
Wagner, J.3
Fujii, S.4
Reinbolt, J.5
Fuchs, R.P.6
Dumas, P.7
-
5
-
-
0037628613
-
Controlled initiation of chromosome replication in Escherichia coli requires functional Hda protein
-
Camara, J. E., K. Skarstad, and E. Crooke. 2003. Controlled initiation of chromosome replication in Escherichia coli requires functional Hda protein. J. Bacteriol. 185:3244-3248.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3244-3248
-
-
Camara, J.E.1
Skarstad, K.2
Crooke, E.3
-
6
-
-
29744460566
-
Hda inactivation of DnaA is the predominant mechanism preventing hyperinitiation of Escherichia coli DNA replication
-
Camara, J. E., A. M. Breier, T. Brendler, S. Austin, N. R. Cozzarelli, and E. Crooke. 2005. Hda inactivation of DnaA is the predominant mechanism preventing hyperinitiation of Escherichia coli DNA replication. EMBO Rep. 6:736-741.
-
(2005)
EMBO Rep.
, vol.6
, pp. 736-741
-
-
Camara, J.E.1
Breier, A.M.2
Brendler, T.3
Austin, S.4
Cozzarelli, N.R.5
Crooke, E.6
-
7
-
-
0035949599
-
A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems
-
Dalrymple, B. P., K. Kongsuwan, G. Wijffels, N. E. Dixon, and P. A. Jennings. 2001. A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems. Proc. Natl. Acad. Sci. USA 98:11627-11632.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11627-11632
-
-
Dalrymple, B.P.1
Kongsuwan, K.2
Wijffels, G.3
Dixon, N.E.4
Jennings, P.A.5
-
8
-
-
20444420519
-
A bipartite polymerase-processivity factor interaction: Only the internal β binding site of the α subunit is required for processive replication by the DNA polymerase III holoenzyme
-
Dohrmann, P. R., and C. S. McHenry. 2005. A bipartite polymerase-processivity factor interaction: only the internal β binding site of the α subunit is required for processive replication by the DNA polymerase III holoenzyme. J. Mol. Biol. 350:228-239.
-
(2005)
J. Mol. Biol.
, vol.350
, pp. 228-239
-
-
Dohrmann, P.R.1
McHenry, C.S.2
-
9
-
-
0026055711
-
Broad-host-range properties of plasmid RK2: Importance of overlapping genes encoding the plasmid replication initiation protein TrfA
-
Fang, F. C., and D. R. Helinski. 1991. Broad-host-range properties of plasmid RK2: importance of overlapping genes encoding the plasmid replication initiation protein TrfA. J. Bacteriol. 173:5861-5868.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 5861-5868
-
-
Fang, F.C.1
Helinski, D.R.2
-
10
-
-
0035943399
-
Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III
-
Jeruzalmi, D., O. Yurieva, Y. Zhao, M. Young, J. Stewart, M. Hingorani, M. O'Donnell, and J. Kuriyan. 2001. Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell 106:417-428.
-
(2001)
Cell
, vol.106
, pp. 417-428
-
-
Jeruzalmi, D.1
Yurieva, O.2
Zhao, Y.3
Young, M.4
Stewart, J.5
Hingorani, M.6
O'Donnell, M.7
Kuriyan, J.8
-
11
-
-
0032504050
-
The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosome replicase
-
Katayama, T., T. Kubota, K. Kurokawa, E. Crooke, and K. Sekimizu. 1998. The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosome replicase. Cell 94:61-71.
-
(1998)
Cell
, vol.94
, pp. 61-71
-
-
Katayama, T.1
Kubota, T.2
Kurokawa, K.3
Crooke, E.4
Sekimizu, K.5
-
12
-
-
0032710590
-
Inactivation of Escherichia coli DnaA protein by DNA polymerase III and negative regulations for initiation of chromosomal replication
-
Katayama, T., and K. Sekimizu. 1999. Inactivation of Escherichia coli DnaA protein by DNA polymerase III and negative regulations for initiation of chromosomal replication. Biochimie 81:835-840.
-
(1999)
Biochimie
, vol.81
, pp. 835-840
-
-
Katayama, T.1
Sekimizu, K.2
-
13
-
-
0035111073
-
Multiple pathways regulating DnaA function in Escherichia coli: Distinct roles for DnaA titration by the datA locus and the regulatory inactivation of DnaA
-
Katayama, T., K. Fujimitsu, and T. Ogawa. 2001. Multiple pathways regulating DnaA function in Escherichia coli: distinct roles for DnaA titration by the datA locus and the regulatory inactivation of DnaA. Biochimie 83:13-17.
-
(2001)
Biochimie
, vol.83
, pp. 13-17
-
-
Katayama, T.1
Fujimitsu, K.2
Ogawa, T.3
-
14
-
-
0035422651
-
Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli
-
Kato, J., and T. Katayama. 2001. Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli. EMBO J. 20:4253-4262.
-
(2001)
EMBO J.
, vol.20
, pp. 4253-4262
-
-
Kato, J.1
Katayama, T.2
-
15
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
Katoh, K., K. Kuma, H. Toh, and T. Miyata. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33:511-518.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
16
-
-
0034072524
-
Identification of a potential membrane targeting region of the replication initiation protein (TrfA) of broad host range plasmid RK2
-
Kim, P. D., T. M. Rosche, and W. Firshein. 2000. Identification of a potential membrane targeting region of the replication initiation protein (TrfA) of broad host range plasmid RK2. Plasmid 43:214-222.
-
(2000)
Plasmid
, vol.43
, pp. 214-222
-
-
Kim, P.D.1
Rosche, T.M.2
Firshein, W.3
-
17
-
-
0037334858
-
Identification of a novel membrane-associated gene product that suppresses toxicity of a TrfA peptide from plasmid RK2 and its relationship to the DnaA host initiation protein
-
Kim, P. D., T. Banack, D. M. Lerman, J. C. Tracy, J. E. Camara, E. Crooke, D. Oliver, and W. Firshein. 2003. Identification of a novel membrane-associated gene product that suppresses toxicity of a TrfA peptide from plasmid RK2 and its relationship to the DnaA host initiation protein. J. Bacteriol. 185:1817-1824.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1817-1824
-
-
Kim, P.D.1
Banack, T.2
Lerman, D.M.3
Tracy, J.C.4
Camara, J.E.5
Crooke, E.6
Oliver, D.7
Firshein, W.8
-
18
-
-
0032190630
-
Negative control of replication inhibition by a novel chromosomal locus exhibiting exceptional affinity for Escherichia coli DnaA protein
-
Kitagawa, R., T. Ozaki, S. Moriya, and T. Ogawa. 1998. Negative control of replication inhibition by a novel chromosomal locus exhibiting exceptional affinity for Escherichia coli DnaA protein. Genes Dev. 12:3032-3304.
-
(1998)
Genes Dev.
, vol.12
, pp. 3032-3304
-
-
Kitagawa, R.1
Ozaki, T.2
Moriya, S.3
Ogawa, T.4
-
19
-
-
0025979746
-
Iteron inhibition of plasmid RK2 replication in vitro: Evidence for intermolecular coupling of replication origins as a mechanism for RK2 replication control
-
Kittel, B. L., and D. R. Helinski. 1991. Iteron inhibition of plasmid RK2 replication in vitro: evidence for intermolecular coupling of replication origins as a mechanism for RK2 replication control. Proc. Natl. Acad. Sci. USA 88:1389-1393.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 1389-1393
-
-
Kittel, B.L.1
Helinski, D.R.2
-
20
-
-
0026717535
-
Three-dimensional structure of the β subunit of E. coli DNA polymerase III holoenzyme: A sliding DNA clamp
-
Kong, X.-P., R. Onrust, M. O'Donnell, and J. Kuriyan. 1992. Three-dimensional structure of the β subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell 69:425-437.
-
(1992)
Cell
, vol.69
, pp. 425-437
-
-
Kong, X.-P.1
Onrust, R.2
O'Donnell, M.3
Kuriyan, J.4
-
21
-
-
0031467674
-
Helicase delivery and activation by DnaA and TrfA proteins during the initiation of replication of the broad host range plasmid RK2
-
Konieczny, I., and D. R. Helinski. 1997. Helicase delivery and activation by DnaA and TrfA proteins during the initiation of replication of the broad host range plasmid RK2. J. Biol. Chem. 272:33312-33318.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 33312-33318
-
-
Konieczny, I.1
Helinski, D.R.2
-
22
-
-
0030792096
-
Role of TrfA and DnaA proteins in origin opening during initiation of DNA replication of the broad host range plasmid RK2
-
Konieczny, I., K. S. Doran, D. R. Helinski, and A. Blasina. 1997. Role of TrfA and DnaA proteins in origin opening during initiation of DNA replication of the broad host range plasmid RK2. J. Biol. Chem. 272:20173-20178.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 20173-20178
-
-
Konieczny, I.1
Doran, K.S.2
Helinski, D.R.3
Blasina, A.4
-
24
-
-
2442504231
-
Interaction of the sliding clamp β-subunit and Hda, a DnaA related protein
-
Kurz, M., B. Dalrymple, G. Wijffels, and K. Kongsuwan. 2004. Interaction of the sliding clamp β-subunit and Hda, a DnaA related protein. J. Bacteriol. 186:3508-3515.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 3508-3515
-
-
Kurz, M.1
Dalrymple, B.2
Wijffels, G.3
Kongsuwan, K.4
-
25
-
-
0036171550
-
The processivity factor beta controls DNA polymerase IV traffic during spontaneous mutagenesis and translesion synthesis in vivo
-
Lenne-Samuel, N., J. Wagner, H. Etienne, and R. P. Fuchs. 2002. The processivity factor beta controls DNA polymerase IV traffic during spontaneous mutagenesis and translesion synthesis in vivo. EMBO Rep. 3:45-49.
-
(2002)
EMBO Rep.
, vol.3
, pp. 45-49
-
-
Lenne-Samuel, N.1
Wagner, J.2
Etienne, H.3
Fuchs, R.P.4
-
26
-
-
0035902496
-
Interaction of the beta sliding clamp with MutS, ligase and DNA polymerase I
-
López de Saro, F. J., and M. O'Donnell. 2001. Interaction of the beta sliding clamp with MutS, ligase and DNA polymerase I. Proc. Natl. Acad. Sci. USA 98:8376-8380.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8376-8380
-
-
De López Saro, F.J.1
O'Donnell, M.2
-
27
-
-
0348134870
-
Competitive processivity-clamp usage by DNA polymerases during DNA replication and repair
-
López de Saro, F. J., R. E. Georgescu, M. F. Goodman, and M. O'Donnell. 2003. Competitive processivity-clamp usage by DNA polymerases during DNA replication and repair. EMBO J. 22:6408-6418.
-
(2003)
EMBO J.
, vol.22
, pp. 6408-6418
-
-
De López Saro, F.J.1
Georgescu, R.E.2
Goodman, M.F.3
O'Donnell, M.4
-
28
-
-
0028219947
-
SeqA, a negative modulator of replication initiation in E. coli
-
Lu, M., J. L. Campbell, E. Boye, and N. Kleckner. 1994. SeqA, a negative modulator of replication initiation in E. coli. Cell 77:413-426.
-
(1994)
Cell
, vol.77
, pp. 413-426
-
-
Lu, M.1
Campbell, J.L.2
Boye, E.3
Kleckner, N.4
-
29
-
-
0030070111
-
A molecular switch in a replication machine defined by an internal competition for protein rings
-
Naktinis, V., J. Turner, and M. O'Donnell. 1996. A molecular switch in a replication machine defined by an internal competition for protein rings. Cell 84:137-145.
-
(1996)
Cell
, vol.84
, pp. 137-145
-
-
Naktinis, V.1
Turner, J.2
O'Donnell, M.3
-
31
-
-
0036015656
-
The datA locus predominantly contributes to the initiator titration mechanism in the control of replication initiation in Escherichia coli
-
Ogawa, T., Y. Yamada, T. Kuroda, T. Kishi, and S. Moriya. 2002. The datA locus predominantly contributes to the initiator titration mechanism in the control of replication initiation in Escherichia coli. Mol. Microbiol. 44:1367-1375.
-
(2002)
Mol. Microbiol.
, vol.44
, pp. 1367-1375
-
-
Ogawa, T.1
Yamada, Y.2
Kuroda, T.3
Kishi, T.4
Moriya, S.5
-
32
-
-
0023665145
-
Hemimethylation prevents DNA replication E. coli
-
Russell, D. W., and N. D. Zinder. 1987. Hemimethylation prevents DNA replication E. coli. Cell 50:1071-1079.
-
(1987)
Cell
, vol.50
, pp. 1071-1079
-
-
Russell, D.W.1
Zinder, N.D.2
-
33
-
-
0028325333
-
The initiator protein DnaA: Evolution, properties, and function
-
Skarstad, K., and E. Boye. 1994. The initiator protein DnaA: evolution, properties, and function. Biochim. Biophys. Acta 1217:111-120.
-
(1994)
Biochim. Biophys. Acta
, vol.1217
, pp. 111-120
-
-
Skarstad, K.1
Boye, E.2
-
34
-
-
0021690245
-
Nucleotide sequence of the trfA gene of broad host range plasmid RK2
-
Smith, C. A., and C. M. Thomas. 1984. Nucleotide sequence of the trfA gene of broad host range plasmid RK2. J. Mol. Biol. 175:251-262.
-
(1984)
J. Mol. Biol.
, vol.175
, pp. 251-262
-
-
Smith, C.A.1
Thomas, C.M.2
-
35
-
-
0025809742
-
Mechanism of the sliding β-clamp of DNA polymerase III holoenzyme
-
Stukenberg, P. T., P. S. Studwell-Vaughan, and M. O'Donnell. 1991. Mechanism of the sliding β-clamp of DNA polymerase III holoenzyme. J. Biol. Chem. 266:11328-11334.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 11328-11334
-
-
Stukenberg, P.T.1
Studwell-Vaughan, P.S.2
O'Donnell, M.3
-
36
-
-
3042815929
-
Molecular mechanism of DNA replication-coupled inactivation of the initiator protein in Escherichia coli: Interaction of DnaA with the sliding clamp-loaded DNA and the sliding clamp-Hda complex
-
Su'etsugu, M., M. Takata, T. Kubota, Y. Matsuda, and T. Katayama. 2004. Molecular mechanism of DNA replication-coupled inactivation of the initiator protein in Escherichia coli: interaction of DnaA with the sliding clamp-loaded DNA and the sliding clamp-Hda complex. Genes Cells 9:509-522.
-
(2004)
Genes Cells
, vol.9
, pp. 509-522
-
-
Su'Etsugu, M.1
Takata, M.2
Kubota, T.3
Matsuda, Y.4
Katayama, T.5
-
37
-
-
4944228029
-
The Escherichia coli dnaN159 mutant displays altered DNA polymerase usage and chronic SOS induction
-
Sutton, M. D. 2004. The Escherichia coli dnaN159 mutant displays altered DNA polymerase usage and chronic SOS induction. J. Bacteriol. 286:6738-6748.
-
(2004)
J. Bacteriol.
, vol.286
, pp. 6738-6748
-
-
Sutton, M.D.1
-
38
-
-
0037117539
-
Posttranslational modification of the umuD-encoded subunit of Escherichia coli DNA polymerase V regulates its interactions with the β processivity clamp
-
Sutton, M. D., I. Narumi, and G. C. Walker. 2002. Posttranslational modification of the umuD-encoded subunit of Escherichia coli DNA polymerase V regulates its interactions with the β processivity clamp. Proc. Natl. Acad. Sci. USA 99:5307-5312.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 5307-5312
-
-
Sutton, M.D.1
Narumi, I.2
Walker, G.C.3
-
39
-
-
0033081486
-
The internal workings of a DNA polymerase clamp-loading machine
-
Turner, J., M. M. Hingorani, Z. Kelman, and M. O'Donnell. 1999. The internal workings of a DNA polymerase clamp-loading machine. EMBO J. 18:771-783.
-
(1999)
EMBO J.
, vol.18
, pp. 771-783
-
-
Turner, J.1
Hingorani, M.M.2
Kelman, Z.3
O'Donnell, M.4
-
40
-
-
0034574554
-
The β clamp targets DNA polymerase IV to DNA and strongly increases its processivity
-
Wagner, J., S. Fujii, P. Gruz, T. Nohmi, and R. P. P. Fuchs. 2000. The β clamp targets DNA polymerase IV to DNA and strongly increases its processivity. EMBO Rep. 1:484-488.
-
(2000)
EMBO Rep.
, vol.1
, pp. 484-488
-
-
Wagner, J.1
Fujii, S.2
Gruz, P.3
Nohmi, T.4
Fuchs, R.P.P.5
-
41
-
-
2442507194
-
2-binding proteins
-
2-binding proteins. Biochemistry 43:5661-5671.
-
(2004)
Biochemistry
, vol.43
, pp. 5661-5671
-
-
Wyffels, G.1
Dalrymple, B.2
Prosselkov, P.3
Kongsuwan, K.4
Epa, V.C.5
Lilley, P.E.6
Jergic, S.7
Buchardt, J.8
Brown, S.E.9
Alewood, P.F.10
Jennings, P.A.11
Dixon, N.E.12
-
42
-
-
0037523309
-
The diverse spectrum of sliding clamp interacting proteins
-
Vivona, J. B., and Z. Kelman. 2003. The diverse spectrum of sliding clamp interacting proteins. FEBS Lett. 546:167-172.
-
(2003)
FEBS Lett.
, vol.546
, pp. 167-172
-
-
Vivona, J.B.1
Kelman, Z.2
|