-
1
-
-
0034189805
-
Quantitative mRNA expression analysis from formalin-fixed, paraffin-embedded tissues using 5′ nuclease quantitative reverse transcription-polymerase chain reaction
-
Godfrey TE, Kim SH, Chavira M et al: Quantitative mRNA expression analysis from formalin-fixed, paraffin-embedded tissues using 5′ nuclease quantitative reverse transcription-polymerase chain reaction. J. Mol. Diagn 2, 84-91 (2000).
-
(2000)
J. Mol. Diagn
, vol.2
, pp. 84-91
-
-
Godfrey, T.E.1
Kim, S.H.2
Chavira, M.3
-
2
-
-
33746028189
-
A quantitative reverse transcriptase polymerase chain reaction assay to identify metastatic carcinoma tissue of origin
-
(In press)
-
Talantov D, Baden J, Jatkoe T et al.: A quantitative reverse transcriptase polymerase chain reaction assay to identify metastatic carcinoma tissue of origin. J. Mol. Diagn. (2006) (In press).
-
(2006)
J. Mol. Diagn.
-
-
Talantov, D.1
Baden, J.2
Jatkoe, T.3
-
3
-
-
32944471569
-
Prognostic gene expression signatures can be measured in tissues collected in RNAlater preservative
-
Chowdary D, Lathrop J, Skelton J et al.: Prognostic gene expression signatures can be measured in tissues collected in RNAlater preservative. J. Mol. Diagn. 8, 31-39 (2006).
-
(2006)
J. Mol. Diagn.
, vol.8
, pp. 31-39
-
-
Chowdary, D.1
Lathrop, J.2
Skelton, J.3
-
4
-
-
13844309784
-
NCI's National Biospecimen Network: Too early or too late?
-
Hede K: NCI's National Biospecimen Network: too early or too late? J. Natl Cancer Inst. 97, 247-248 (2005).
-
(2005)
J. Natl Cancer Inst.
, vol.97
, pp. 247-248
-
-
Hede, K.1
-
5
-
-
7044272596
-
The Breast Cancer Family Registry: An infrastructure for cooperative multinational, interdisciplinary and translational studies of the genetic epidemiology of breast cancer
-
John EM, Hopper JL, Beck JC et al.: The Breast Cancer Family Registry: an infrastructure for cooperative multinational, interdisciplinary and translational studies of the genetic epidemiology of breast cancer. Breast Cancer Res. 6, R375-R389 (2004).
-
(2004)
Breast Cancer Res.
, vol.6
-
-
John, E.M.1
Hopper, J.L.2
Beck, J.C.3
-
6
-
-
84984933234
-
High density synthetic oligonucleotide arrays
-
Lipshutz RJ, Fodor SP, Gingeras TR, Lockhart DJ: High density synthetic oligonucleotide arrays. Nat. Genet. 21, 20-24 (1999).
-
(1999)
Nat. Genet.
, vol.21
, pp. 20-24
-
-
Lipshutz, R.J.1
Fodor, S.P.2
Gingeras, T.R.3
Lockhart, D.J.4
-
7
-
-
10744221835
-
A microarray platform comparison for neuroscience applications
-
Parrish ML, Wei N, Duenwald S et al.: A microarray platform comparison for neuroscience applications. J. Neurosci. Method 132, 57-68 (2004).
-
(2004)
J. Neurosci. Method
, vol.132
, pp. 57-68
-
-
Parrish, M.L.1
Wei, N.2
Duenwald, S.3
-
8
-
-
0036852098
-
Gene expression analysis using oligonucleotide arrays produced by maskless photolithography
-
Nuwaysir EF, Huang W, Albert TJ et al.: Gene expression analysis using oligonucleotide arrays produced by maskless photolithography. Genome Res. 12, 1749-1755 (2002).
-
(2002)
Genome Res.
, vol.12
, pp. 1749-1755
-
-
Nuwaysir, E.F.1
Huang, W.2
Albert, T.J.3
-
9
-
-
84883837006
-
Validation of a novel, fully integrated and flexible microarray benchtop facility for gene expression profiling
-
Baurn M, Bielau S, Rittner N et al.: Validation of a novel, fully integrated and flexible microarray benchtop facility for gene expression profiling. Nucleic Acids Res. 31, e151 (2003).
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Baurn, M.1
Bielau, S.2
Rittner, N.3
-
10
-
-
0035890661
-
A flexible light-directed DNA chip synthesis gated by deprotection using solution photogenerated acids
-
Gao X, LeProust E, Zhang H et al.: A flexible light-directed DNA chip synthesis gated by deprotection using solution photogenerated acids. Nucleic Acid Res. 29, 4744-4750 (2001).
-
(2001)
Nucleic Acid Res.
, vol.29
, pp. 4744-4750
-
-
Gao, X.1
LeProust, E.2
Zhang, H.3
-
11
-
-
0642336937
-
Oligodeoxyribonucleotide probe accessibility on a three-dimensional DNA microarray surface and the effect of hybridization time on the accuracy of expression ratios
-
Dorris DR, Nguyen A, Gieser L et al.: Oligodeoxyribonucleotide probe accessibility on a three-dimensional DNA microarray surface and the effect of hybridization time on the accuracy of expression ratios. BMC Biotechnol. 3, 6 (2003).
-
(2003)
BMC Biotechnol.
, vol.3
, pp. 6
-
-
Dorris, D.R.1
Nguyen, A.2
Gieser, L.3
-
13
-
-
84984932472
-
Exploring the new world of the genome with DNA microarrays
-
Brown PO, Botstein D: Exploring the new world of the genome with DNA microarrays. Nat. Genet. 21, 33-37 (1999).
-
(1999)
Nat. Genet.
, vol.21
, pp. 33-37
-
-
Brown, P.O.1
Botstein, D.2
-
14
-
-
0035145527
-
Quantitative assessment of DNA microarrays - Comparison with Northern blot analyses
-
Taniguchi M, Miura K, Iwao, H, Yamanaka S: Quantitative assessment of DNA microarrays - comparison with Northern blot analyses. Genomics 71, 34-39 (2001).
-
(2001)
Genomics
, vol.71
, pp. 34-39
-
-
Taniguchi, M.1
Miura, K.2
Iwao, H.3
Yamanaka, S.4
-
15
-
-
0034283071
-
Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis
-
Ishii M, Hashimoto S, Tsutsumi S et al.: Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis. Genomics 68, 136-143 (2000).
-
(2000)
Genomics
, vol.68
, pp. 136-143
-
-
Ishii, M.1
Hashimoto, S.2
Tsutsumi, S.3
-
16
-
-
0036545952
-
An assessment of Motorola Codelink microarray performance for gene expression profiling applications
-
Ramakrishnan R, Dorris D, Lubtinsky A et al.: An assessment of Motorola Codelink microarray performance for gene expression profiling applications. Nuc. Acids Res. 30, e30 (2002).
-
(2002)
Nuc. Acids Res.
, vol.30
-
-
Ramakrishnan, R.1
Dorris, D.2
Lubtinsky, A.3
-
17
-
-
2942578063
-
A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen
-
Ma XJ, Wang Z, Ryan PD et al.: A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen. Cancer Cell 5, 607-616 (2004).
-
(2004)
Cancer. Cell
, vol.5
, pp. 607-616
-
-
Ma, X.J.1
Wang, Z.2
Ryan, P.D.3
-
18
-
-
21444453976
-
Limits of predictive models using microarray data for breast cancer clinical treatment outcome
-
Reid JF, Lusa L, De Cecco L et al.: Limits of predictive models using microarray data for breast cancer clinical treatment outcome. J. Natl Cancer Inst. 97, 927-930 (2005).
-
(2005)
J. Natl Cancer Inst.
, vol.97
, pp. 927-930
-
-
Reid, J.F.1
Lusa, L.2
De Cecco, L.3
-
19
-
-
12144286757
-
A comparison of oligonucleotide and cDNA-based microarray systems
-
Mah N, Thelin A, Lu T et al.: A comparison of oligonucleotide and cDNA-based microarray systems. Physiol Genomics 16, 361-370 (2004).
-
(2004)
Physiol Genomics
, vol.16
, pp. 361-370
-
-
Mah, N.1
Thelin, A.2
Lu, T.3
-
20
-
-
0002922661
-
Microarray results: How accurate are they?
-
Kothapalli R, Yoder SJ, Mane S, Loughran TP Jr: Microarray results: how accurate are they? BMC Bioinformatics 3, 22 (2002).
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 22
-
-
Kothapalli, R.1
Yoder, S.J.2
Mane, S.3
Loughran Jr., T.P.4
-
21
-
-
0141905890
-
Evaluation of gene expression measurements from commercial microarray platforms
-
Tan PK, Downey TJ, Spitznagel EL Jr et al: Evaluation of gene expression measurements from commercial microarray platforms. Nuc. Acids Res. 31, 5676-5684 (2003)
-
(2003)
Nuc. Acids Res.
, vol.31
, pp. 5676-5684
-
-
Tan, P.K.1
Downey, T.J.2
Spitznagel Jr., E.L.3
-
22
-
-
0036211063
-
Analysis of matched mRNA measurements from two different microarray technologies
-
Kuo WP, Jenssen T-K, Butte AJ, Ohno-Machado L, Kohane IS: Analysis of matched mRNA measurements from two different microarray technologies. Bioinform, 18, 405-412 (2002).
-
(2002)
Bioinform
, vol.18
, pp. 405-412
-
-
Kuo, W.P.1
Jenssen, T.-K.2
Butte, A.J.3
Ohno-Machado, L.4
Kohane, I.S.5
-
23
-
-
0346670079
-
Comparing the use of Affymetrix to spotted oligonucleotide microarrays using two retinal pigment epithelium cell tines
-
Rogojina AT, Orr WE, Song BK, Geisert EE Jr: Comparing the use of Affymetrix to spotted oligonucleotide microarrays using two retinal pigment epithelium cell tines. Mol. Vis. 9, 482-496 (2003).
-
(2003)
Mol. Vis.
, vol.9
, pp. 482-496
-
-
Rogojina, A.T.1
Orr, W.E.2
Song, B.K.3
Geisert Jr., E.E.4
-
24
-
-
2342624566
-
Microarray reality checks in the context of a complex disease
-
Miklos GL, Maleszka R: Microarray reality checks in the context of a complex disease. Nat. Biotechnol. 22, 615-621 (2004).
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 615-621
-
-
Miklos, G.L.1
Maleszka, R.2
-
25
-
-
1542577328
-
Comparing cDNA and oligonucleotide array data: Concordance of gene expression across platforms for the NCI-60 cancer cells
-
Lee JK, Bussey KJ, Gwadry FG et al.: Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells. Genome Biol. 4, R82 (2003).
-
(2003)
Genome Biol.
, vol.4
-
-
Lee, J.K.1
Bussey, K.J.2
Gwadry, F.G.3
-
26
-
-
2442691827
-
Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements
-
Mecham BH, Klus GT, Strovel J et al: Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements. Nuc. Acids Res. 32, e74 (2004).
-
(2004)
Nuc. Acids Res.
, vol.32
-
-
Mecham, B.H.1
Klus, G.T.2
Strovel, J.3
-
27
-
-
0037095769
-
Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays
-
Yuen T, Wurmbach E, Pfeffer RL, Ebersole BJ, Sealfon SC: Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays. Nuc. Acid Res. 30, e48 (2002).
-
(2002)
Nuc. Acid Res.
, vol.30
-
-
Yuen, T.1
Wurmbach, E.2
Pfeffer, R.L.3
Ebersole, B.J.4
Sealfon, S.C.5
-
28
-
-
2642561079
-
Are data from different gene expression microarray platforms comparable?
-
Jarvinen AK, Hautaniemi S, Edgren H et al.: Are data from different gene expression microarray platforms comparable? Genomics 83, 1164-1168 (2004).
-
(2004)
Genomics
, vol.83
, pp. 1164-1168
-
-
Jarvinen, A.K.1
Hautaniemi, S.2
Edgren, H.3
-
29
-
-
0038486795
-
Spotted long oligonucleotide arrays for human gene expression analysis
-
Barczak A, Rodriguez MW, Hanspers K et al.: Spotted long oligonucleotide arrays for human gene expression analysis. Genome Res. 13, 1775-1785 (2003).
-
(2003)
Genome Res.
, vol.13
, pp. 1775-1785
-
-
Barczak, A.1
Rodriguez, M.W.2
Hanspers, K.3
-
30
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
-
Brazma A, Hingamp P, Quackenbush J et al.: Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat. Genet. 29, 365-371 (2001).
-
(2001)
Nat. Genet.
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
-
31
-
-
2942577836
-
Cross-platform comparison and visualisation of gene expression data using co-inertia analysis
-
Culhane AC, Perriere G, Higgins DG: Cross-platform comparison and visualisation of gene expression data using co-inertia analysis. BMC Bioinformatics 4, 59(2003).
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 59
-
-
Culhane, A.C.1
Perriere, G.2
Higgins, D.G.3
-
32
-
-
2442719003
-
Universal Reference RNA as a standard for microarray experiments
-
Novoradovskaya N, Whitfield ML, Basehore LS et al.: Universal Reference RNA as a standard for microarray experiments. BMC Genomics 5, 20 (2004).
-
(2004)
BMC Genomics
, vol.5
, pp. 20
-
-
Novoradovskaya, N.1
Whitfield, M.L.2
Basehore, L.S.3
-
33
-
-
33746108159
-
A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies
-
Kuo WP, Liu F, Trimarchi J et al.: A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies. Nat. Biotechnol. 24, 832-840 (2006).
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 832-840
-
-
Kuo, W.P.1
Liu, F.2
Trimarchi, J.3
-
34
-
-
33748491517
-
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
-
the MAQC Consortium:
-
Shi L, Reid LH, Jones VM et al.; the MAQC Consortium: The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat. Biotechnol. 24, 1151-1161 (2006).
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 1151-1161
-
-
Shi, L.1
Reid, L.H.2
Jones, V.M.3
-
35
-
-
0037478605
-
Repeated observation of breast tumor subtypes in independent gene expression data sets
-
Sorlie T, Tibshirani R, Parker J et al.: Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc. Natl Acad. Sci. USA 100, 8418-8423 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 8418-8423
-
-
Sorlie, T.1
Tibshirani, R.2
Parker, J.3
-
36
-
-
0036682376
-
Meta-analysis of microarrays: Interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer
-
Rhodes DR, Barrette TR, Rubin MA, Ghosh D, Chinnaiyan AM: Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer. Cancer Res. 62, 4427-4433 (2002).
-
(2002)
Cancer Res.
, vol.62
, pp. 4427-4433
-
-
Rhodes, D.R.1
Barrette, T.R.2
Rubin, M.A.3
Ghosh, D.4
Chinnaiyan, A.M.5
-
37
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh AA, Eisen MB, Davis RE et al.: Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403, 503-511 (2000).
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
-
38
-
-
18244409933
-
Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning
-
Shipp MA, Ross KN, Tamayo P et al.: Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning. Nat. Med. 8, 68-74 (2002).
-
(2002)
Nat. Med.
, vol.8
, pp. 68-74
-
-
Shipp, M.A.1
Ross, K.N.2
Tamayo, P.3
-
39
-
-
0043192901
-
A gene expression-based method to diagnose clinically distinct subgroups of diffuse large B cell lymphoma
-
Wright G, Tan B, Rosenwald A, Hurt EH, Wiestner A, Staudt LM: A gene expression-based method to diagnose clinically distinct subgroups of diffuse large B cell lymphoma. Proc. Natl Acad. Sci. USA 100, 9991-9996 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 9991-9996
-
-
Wright, G.1
Tan, B.2
Rosenwald, A.3
Hurt, E.H.4
Wiestner, A.5
Staudt, L.M.6
-
40
-
-
2442684455
-
Gene expression profiles and molecular markers to predict recurrence of Dukes' B colon cancer
-
Wang Y, Jatkoe T, Zhang Y et al.: Gene expression profiles and molecular markers to predict recurrence of Dukes' B colon cancer. J. Clin. Oncol. 22, 1564-1571 (2004).
-
(2004)
J. Clin. Oncol.
, vol.22
, pp. 1564-1571
-
-
Wang, Y.1
Jatkoe, T.2
Zhang, Y.3
-
41
-
-
13844310310
-
Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer
-
Wang Y, Klijn JG, Zhang Y et al.: Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. Lancet 365, 671-679 (2005).
-
(2005)
Lancet
, vol.365
, pp. 671-679
-
-
Wang, Y.1
Klijn, J.G.2
Zhang, Y.3
-
42
-
-
21444445077
-
Development and validation of therapeutically relevant multi-gene biomarker classifiers
-
Simon R: Development and validation of therapeutically relevant multi-gene biomarker classifiers. J. Natl. Cancer Inst. 97, 866-867 (2005).
-
(2005)
J. Natl. Cancer Inst.
, vol.97
, pp. 866-867
-
-
Simon, R.1
-
43
-
-
1942438016
-
Rules of evidence for cancer molecular-marker discovery and validation
-
Ransohoff, D. Rules of evidence for cancer molecular-marker discovery and validation. Nat. Rev. Cancer 4, 309-314 (2004).
-
(2004)
Nat. Rev. Cancer
, vol.4
, pp. 309-314
-
-
Ransohoff, D.1
-
44
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
van de Vijver MJ, He YD, van't Veer LJ et al.: A gene-expression signature as a predictor of survival in breast cancer. N. Engl. J. Med. 347, 1999-2009 (2002).
-
(2002)
N. Engl. J. Med.
, vol.347
, pp. 1999-2009
-
-
van de Vijver, M.J.1
He, Y.D.2
van't Veer, L.J.3
-
45
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van 't Veer LJ, Dai H, van de Vijver MJ et al.: Gene expression profiling predicts clinical outcome of breast cancer. Nature 415, 530-536 (2002).
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
van't Veer, L.J.1
Dai, H.2
van de Vijver, M.J.3
-
46
-
-
0242414586
-
Gene-expression signatures in breast cancer
-
Ransohoff DF: Gene-expression signatures in breast cancer. N. Engl. J. Med. 348, 1715-1717 (2003)
-
(2003)
N. Engl. J. Med.
, vol.348
, pp. 1715-1717
-
-
Ransohoff, D.F.1
-
47
-
-
0038244058
-
Gene expression predictors of breast cancer outcomes
-
Huang E, Cheng SH, Dressman H et al.: Gene expression predictors of breast cancer outcomes. Lancet 361, 1590-1596 (2003)
-
(2003)
Lancet
, vol.361
, pp. 1590-1596
-
-
Huang, E.1
Cheng, S.H.2
Dressman, H.3
-
48
-
-
0042125511
-
Gene expression profiling for the prediction of therapeutic response to docetaxel in patients with breast cancer
-
Chang JC, Wooten EC, Tsimelzon A et al.: Gene expression profiling for the prediction of therapeutic response to docetaxel in patients with breast cancer. Lancet 362, 362-369 (2003).
-
(2003)
Lancet
, vol.362
, pp. 362-369
-
-
Chang, J.C.1
Wooten, E.C.2
Tsimelzon, A.3
-
49
-
-
0037142053
-
The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma
-
Rosenwald A, Wright G, Chan WC et al.: The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. N. Engl. J. Med. 346, 1937-1947 (2002).
-
(2002)
N. Engl. J. Med.
, vol.346
, pp. 1937-1947
-
-
Rosenwald, A.1
Wright, G.2
Chan, W.C.3
-
50
-
-
33645825388
-
Multicenter validation of a gene expression-based prognostic signature in lymph node-negative primary breast cancer
-
Foekens JA, Atkins D, Zhang Y et al.: Multicenter validation of a gene expression-based prognostic signature in lymph node-negative primary breast cancer. J. Clin. Oncol. 24, 1665-1671 (2006).
-
(2006)
J. Clin. Oncol.
, vol.24
, pp. 1665-1671
-
-
Foekens, J.A.1
Atkins, D.2
Zhang, Y.3
-
51
-
-
0037076272
-
Diagnosis of multiple cancer types by shrunken centroids of gene expression
-
Tibshirani R, Hastie T, Narasimhan B, Chu G: Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc. Natl. Acad. Sci. USA 99, 6567-6572 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 6567-6572
-
-
Tibshirani, R.1
Hastie, T.2
Narasimhan, B.3
Chu, G.4
-
52
-
-
33744813556
-
Genes associated with breast cancer metastatic to bone
-
Smid M, Wang Y, Klijn JG et al.: Genes associated with breast cancer metastatic to bone. J Clin. Oncol. 24, 2261-2267 (2006).
-
(2006)
J Clin. Oncol.
, vol.24
, pp. 2261-2267
-
-
Smid, M.1
Wang, Y.2
Klijn, J.G.3
-
53
-
-
2342587416
-
Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes
-
Lossos IS, Czerwinski DK, Alizadeh AA et al.: Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes. N. Engl. J. Med. 350, 1828-1837 (2004).
-
(2004)
N. Engl. J. Med.
, vol.350
, pp. 1828-1837
-
-
Lossos, I.S.1
Czerwinski, D.K.2
Alizadeh, A.A.3
|