Zhouia amylolytica gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from sediment of the South China Sea

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 12, 2006, Pages 2825-2829

  Liu, Zhi Pei ^a   Wang, Bao Jun ^a   Dai, Xin ^a   Liu, Xing Yu ^a,b   Liu, Shuang Jiang ^a  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MENAQUINONE; RNA 16S; UNSATURATED FATTY ACID;

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHINA; FLAVOBACTERIACEAE; GENE SEQUENCE; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RNA GENE; STRAIN DIFFERENCE; ZHOUIA AMYLOLYTICA;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; FLAVOBACTERIACEAE; GENES, RRNA; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA;

COENONIA ANATINA; FLAVOBACTERIACEAE; NEGIBACTERIA;

EID: 33845807865     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64587-0     Document Type: Article

References (42)

1. Bernardet, J.-F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
2. Bernardet, J.-F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
3. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surface of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa com. nov. Int J Syst Evol Microbiol 50, 1861-1868.
4. Bowman, J. P. & Nichols, D. S. (2002). Aequorivita gen. nov., a member of the family Flavobacteriaceae isolated from terrestrial and marine Antarctic habitats. Int J Syst Evol Microbiol 52, 1533-1541.
5. Bowman, J. P. & Nichols, D. S. (2005). Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnswilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia. Int J Syst Evol Microbiol 55, 1471-1486.
6. Bowman, J. P., McCammon, S. A., Lewis, T., Skerratt, J. H., Brown, J. L., Nichols, D. S. & McMeekin, T. A. (1998). Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144, 1601-1609.
7. Bruns, A., Rohde, M. & Berthe-Corti, L. (2001). Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 51, 1997-2006.
8. Cho, J. C. & Giovannoni, S. J. (2003). Croceibacter atlanticus gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae. Syst Appl Microbiol 26, 76-83.
9. Cho, J.-C. & Giovannoni, S. J. (2004). Robiginitalea biformata gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae with a higher G+C content. Int J Syst Evol Microbiol 54, 1101-1106.
10. Collins, M. D. (1985). Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267-287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
11. Donachie, S. P., Bowman, J. P. & Alam, M. (2004). Psychroflexus tropicus sp. nov., an obligately halophilic Cytophaga-Flavobacterium-Bacteroides group bacterium from an Hawaiian hypersaline lake. Int J Syst Evol Microbiol 54, 935-940.
12. Dong, X.-Z. & Cai, M.-Y. (2001). Determinative Manual for Routine Bacteriology. Beijing: Scientific Press.
13. Fitch, W. M. (1971). Toward defining the course of evolution: minimum changes for a specific tree topology. Syst Zool 20, 406-416.
14. Gerhardt P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
15. Hu, Y.-T., Zhou, P.-J., Zhou, Y.-G., Liu, Z.-H. & Liu, S.-J. (2004). Saccharothrix xingjiangensis sp. nov., a pyrene-degrading actinomycete isolated from Tianchi Lake, Xinjiang, China. Int J Syst Evol Microbiol 54, 2091-2094.
16. Ivanova, E. P., Nedashkovskaya, O. I., Chun, J. & 7 other authors (2001). Arenibacter gen. nov., new genus of the family Flavobacteriaceae and description of a new species, Arenibacter latericius sp. nov. Int J Syst Evol Microbiol 51, 1987-1995.
17. Johansen, J. E., Nielsen, P. & Sjøholm, C. (1999). Description of Cellulophaga baltica gen. nov., sp. nov. and Cellulophaga fucicola gen. nov., sp. nov. and reclassification of [Cytophaga] lytica to Cellulophaga lytica gen. nov., comb. nov. Int J Syst Bacteriol 49, 1231-1240.
18. Jooste, P. J. (1985). The taxonomy and significance of Flavobacterium-Cytophaga strains from dairy sources. PhD thesis, University of the Orange Free State, South Africa.
19. Jung, S. Y., Kang, S. J., Lee, M. H., Lee, S. Y., Oh, T. K. & Yoon, J. H. (2005). Gaetbulibacter saemankumensis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a tidal flat sediment in Korea. Int J Syst Evol Microbiol 55, 1845-1849.
20. Lau, S. C., Tsoi, M. M., Li, X. & 7 other authors (2005). Winogradskyella poriferorum sp. nov., a novel member of the family Flavobacteriaceae isolated from a sponge in the Bahamas. Int J Syst Evol Microbiol 55, 1589-1592.
21. Lau, S. C., Tsoi, M. M., Li, X., Plakhotnikova, I., Dobretsov, S., Wu, M., Wong, P. K., Pawlik, J. R. & Qian, P. Y. (2006). Stenothermobacter spongiae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a marine sponge in the Bahamas, and emended description of Nonlabens tegetincola. Int J Syst Evol Microbiol 56, 181-185.
22. Mancuso, N. C., Bowman, J. P. & Guezennec, J. (2005). Olleya marilimosa gen. nov., sp. nov., an exopolysaccharide-producing marine bacterium from the family Flavobacteriaceae, isolated from the Southern Ocean. Int J Syst Evol Microbiol 55, 1557-1561.
23. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from thermal denaturation temperature. J Mol Biol 5, 109-118.
24. Nedashkovskaya, O. I., Kim, S. B., Han, S. K & 7 other authors (2003). Mesonia algae gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi (Kütz) Komm. Int J Syst Evol Microbiol 53, 1967-1971.
25. Nedashkovskaya, O. I., Kim, S. B., Han, S. K, Rhee, M. S., Lysenko, A. M., Falsen, E., Frolova, G. M., Mikhailov, V. V. & Bae, K S. (2004a). Ulvibacter litoralis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the green alga Ulva fenestrata. Int J Syst Evol Microbiol 54, 119-123.
26. Nedashkovskaya, O. I, Suzuki, M., Lysenko, A. M., Snauwaert, C., Vancanneyt, M., Swings, J., Vysotskii, M. V. & Mikhailov, V. V. (2004b). Cellulophaga pacifica sp. nov. Int J Syst Evol Microbiol 54, 609-613.
27. Nedashkovskaya, O. I., Kim, S. B., Han, S. K. & 7 other authors (2004c). Maribacter gen. nov., a new member of the family Flavobacteriaceae, isolated from marine habitats, containing the species Maribacter sedimenticola sp. nov., Maribacter aquivivus sp. nov., Maribacter orientalis sp. nov. and Maribacter ulvicola sp. nov. Int J Syst Evol Microbiol 54, 1017-1023.
28. Nedashkovskaya, O. I., Kim, S. B., Han, S. K. & 7 other authors (2004d). Algibacter lectus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from green algae. Int J Syst Evol Microbiol 54, 1257-1261.
29. Nedashkovskaya, O. I., Kim, S. B., Han, S. K., Snauwaert, C., Vancanneyt, M. & 7 other authors (2005a). Winogradskyella thalassocola gen. nov., sp. nov., Winogradskyella epiphytica sp. nov. and Winogradskyella eximia sp. nov., marine bacteria of the family Flavobacteriaceae. Int J Syst Evol Microbiol 55, 49-55.
30. Nedashkovskaya, O. I, Kim, S. B., Lysenko, A. M., Frolova, G. M., Mikhailov, V. V., Lee, K. H. & Bae, K. S. (2005b). Description of Aquimarina muelleri gen. nov., sp. nov., and proposal of the reclassification of [Cytophaga] latercula Lewin 1969 as Stanierella latercula gen. nov., comb. nov. Int J Syst Evol Microbiol 55, 225-229.
31. Nedashkovskaya, O. I., Kim, S. B., Lysenko, A. M., Frolova, G. M., Mikhailov, V. V. & Bae, K. S. (2005c). Bizionia paragorgiae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the soft coral Paragorgia arborea. Int J Syst Evol Microbiol 55, 375-378.
32. Nedashkovskaya, O. I., Kim, S. B., Lysenko, A. M., Frolova, G. M., Mikhailov, V. V., Bae, K. S., Lee, D. H. & Kim, I. S. (2005d). Gramella echinicola gen. nov., sp. nov., a novel halophilic bacterium of the family Flavobacteriaceae isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol 55, 391-394.
33. AL, emend. In Bergey's Manual of Systematic Bacteriology, vol. 3, pp. 2015-2050. Edited by J. T. Staley, M. P. Bryant, N. Pfennig & J. C. Holt. Baltimore: Williams & Wilkins.
34. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for constructing phylogenetic trees. Mol Biol Evol 4, 406-425.
35. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
36. Vandamme, P., Vancanneyt, M., Segers, P., Ryll, M., Köhler, B., Ludwig, W. & Hinz, H.-H. (1999). Coenonia anatina gen. nov., sp. nov., a novel bacterium associated with respiratory disease in ducks and geese. Int J Syst Bacteriol 49, 867-874.
37. Van de Peer, Y. & De Wachter, R. (1994). TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10, 569-570.
38. Wu, C., Lu, X., Qin, M., Wang, Y. & Ruan, J. (1989). Analysis of menaquinone compound in microbial cells by HPLC. Microbiology [English translation of Microbiology (Beijing)] 16, 176-178.
39. Yoon, J. H., Kang, S. J., Lee, C. H. & Oh, T. K. (2005). Dokdonia donghaensis gen. nov., sp. nov., isolated from sea water. Int J Syst Evol Microbiol 55, 2323-2328.
40. Yoon, J.-H., Kang, S.-J., Jung, S.-Y., Oh, H. W. & Oh, T.-K. (2006a). Gaetbulimicrobium brevivitae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 56, 115-119.
41. Yoon, J. H., Kang, S. J., Lee, C. H. & ON T. K. (2006b). Donghaeana dokdonensis gen. nov., sp. nov., isolated from sea water. Int J Syst Evol Microbiol 56, 187-191.
42. Zhang, D., Yang, H., Zhang, W., Huang, Z. & Liu, S.-J. (2003). Rhodocista pekingensis sp. nov., a cyst-forming phototrophic bacterium from a municipal wastewater treatment plant. Int J Syst Evol Microbiol 53, 1111-1114.