메뉴 건너뛰기




Volumn 152, Issue 1, 2007, Pages 11-24

The variable codons of H3 influenza A virus haemagglutinin genes

Author keywords

[No Author keywords available]

Indexed keywords

INFLUENZA VIRUS HEMAGGLUTININ; VIRUS DNA;

EID: 33845759511     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-006-0834-8     Document Type: Article
Times cited : (11)

References (41)
  • 1
    • 0032736987 scopus 로고    scopus 로고
    • Positive selection on the H3 hemagglutinin gene of human influenza virus a
    • RM Bush WM Fitch CA Bender NJ Cox 1999 Positive selection on the H3 hemagglutinin gene of human influenza virus A Mol Biol Evol 16 1457 1465
    • (1999) Mol Biol Evol , vol.16 , pp. 1457-1465
    • Bush, R.M.1    Fitch, W.M.2    Bender, C.A.3    Cox, N.J.4
  • 2
    • 1842509978 scopus 로고    scopus 로고
    • Positive selection detection in 40,000 human immunodeficiency virus (HIV) type 1 sequences automatically identifies drug resistance and positive fitness mutations in HIV protease and reverse transcriptase
    • L Chen A Perlina CJ Lee 2004 Positive selection detection in 40,000 human immunodeficiency virus (HIV) type 1 sequences automatically identifies drug resistance and positive fitness mutations in HIV protease and reverse transcriptase J Virol 78 3722 3732
    • (2004) J Virol , vol.78 , pp. 3722-3732
    • Chen, L.1    Perlina, A.2    Lee, C.J.3
  • 3
    • 0003668973 scopus 로고
    • John Murray, London, 1st edn. (van Wyhe, J. The writings of Charles Darwin on the web.)
    • Darwin C (1859) On the origin of species by means of natural selection. John Murray, London, 1st edn. (van Wyhe, J. The writings of Charles Darwin on the web. http://pages.britishlibrary.net/charles.darwin2/texts.html)
    • (1859) On the Origin of Species by Means of Natural Selection
    • Darwin, C.1
  • 4
    • 0027500136 scopus 로고
    • Ribosomal RNA secondary structure: Compensatory mutations and implications for phylogenetic analysis
    • MT Dixon DM Hillis 1993 Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis Mol Biol Evol 10 256 267
    • (1993) Mol Biol Evol , vol.10 , pp. 256-267
    • Dixon, M.T.1    Hillis, D.M.2
  • 5
    • 0037186608 scopus 로고    scopus 로고
    • Testing the neutral theory of molecular evolution with genomic data from Drosophila
    • JC Fay GJ Wyckoff CI Wu 2002 Testing the neutral theory of molecular evolution with genomic data from Drosophila Nature 415 1024 1026
    • (2002) Nature , vol.415 , pp. 1024-1026
    • Fay, J.C.1    Wyckoff, G.J.2    Wu, C.I.3
  • 6
    • 0030750055 scopus 로고    scopus 로고
    • Long term trends in the evolution of H(3) HA1 human influenza type a
    • WM Fitch RM Bush CA Bender NJ Cox 1997 Long term trends in the evolution of H(3) HA1 human influenza type A Proc Natl Acad Sci USA 94 7712 7718
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 7712-7718
    • Fitch, W.M.1    Bush, R.M.2    Bender, C.A.3    Cox, N.J.4
  • 7
    • 0025678383 scopus 로고
    • Molecular clock of viral evolution, and the neutral theory
    • T Gojobori EN Moriyama M Kimura 1990 Molecular clock of viral evolution, and the neutral theory Proc Natl Acad Sci USA 87 10015 10018
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 10015-10018
    • Gojobori, T.1    Moriyama, E.N.2    Kimura, M.3
  • 8
    • 0025675724 scopus 로고
    • A maximum likelihood approach to the detection of selection from a phylogeny
    • B Golding J Felsenstein 1990 A maximum likelihood approach to the detection of selection from a phylogeny J Mol Evol 31 511 523
    • (1990) J Mol Evol , vol.31 , pp. 511-523
    • Golding, B.1    Felsenstein, J.2
  • 10
    • 0023188637 scopus 로고
    • Accelerated evolution in the reactive centre regions of serine protease inhibitors
    • RE Hill ND Hastie 1987 Accelerated evolution in the reactive centre regions of serine protease inhibitors Nature 326 96 99
    • (1987) Nature , vol.326 , pp. 96-99
    • Hill, R.E.1    Hastie, N.D.2
  • 11
    • 3543051101 scopus 로고    scopus 로고
    • Conserved RNA secondary structures in viral genomes: A survey
    • IL Hofacker PF Stadler RR Stocsits 2004 Conserved RNA secondary structures in viral genomes: a survey Bioinformatics 20 1495 1499
    • (2004) Bioinformatics , vol.20 , pp. 1495-1499
    • Hofacker, I.L.1    Stadler, P.F.2    Stocsits, R.R.3
  • 12
    • 24644454633 scopus 로고    scopus 로고
    • Role of specific hemagglutinin amino acids in the immunogenicity and protection of H5N1 influenza virus vaccines
    • E Hoffmann AS Lipatov RJ Webby EA Govorkova RG Webster 2005 Role of specific hemagglutinin amino acids in the immunogenicity and protection of H5N1 influenza virus vaccines Proc Natl Acad Sci USA 102 12915 12920
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 12915-12920
    • Hoffmann, E.1    Lipatov, A.S.2    Webby, R.J.3    Govorkova, E.A.4    Webster, R.G.5
  • 13
    • 2942656772 scopus 로고    scopus 로고
    • Bayesian Estimation of Positively Selected Sites
    • JP Huelsenbeck KA Dyer 2004 Bayesian Estimation of Positively Selected Sites J Mol Evol 58 661 672
    • (2004) J Mol Evol , vol.58 , pp. 661-672
    • Huelsenbeck, J.P.1    Dyer, K.A.2
  • 14
    • 0023764283 scopus 로고
    • Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection
    • AL Hughes M Nei 1988 Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection Nature 335 167 170
    • (1988) Nature , vol.335 , pp. 167-170
    • Hughes, A.L.1    Nei, M.2
  • 15
    • 0027360094 scopus 로고
    • The hemagglutinins of duck and human H1 influenza viruses differ in sequence conservation and in glycosylation
    • MD Inkster VS Hinshaw IT Schulze 1993 The hemagglutinins of duck and human H1 influenza viruses differ in sequence conservation and in glycosylation J Virol 67 7436 7443
    • (1993) J Virol , vol.67 , pp. 7436-7443
    • Inkster, M.D.1    Hinshaw, V.S.2    Schulze, I.T.3
  • 19
    • 17744396121 scopus 로고    scopus 로고
    • Not so different after all: A comparison of methods for detecting amino acid sites under selection
    • SL Kosakovsky Pond SDW Frost 2005 Not so different after all: a comparison of methods for detecting amino acid sites under selection Mol Biol Evol 22 1208 1222
    • (2005) Mol Biol Evol , vol.22 , pp. 1208-1222
    • Kosakovsky Pond, S.L.1    Frost, S.D.W.2
  • 20
    • 0022005270 scopus 로고
    • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
    • WH Li CI Wu CC Luo 1985 A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes Mol Evol Biol 2 150 174
    • (1985) Mol Evol Biol , vol.2 , pp. 150-174
    • Li, W.H.1    Wu, C.I.2    Luo, C.C.3
  • 21
    • 0027403961 scopus 로고
    • Unbiased estimates of the rates of synonymous and non-synonymous substitution
    • WH Li 1993 Unbiased estimates of the rates of synonymous and non-synonymous substitution J Mol Evol 36 96 99
    • (1993) J Mol Evol , vol.36 , pp. 96-99
    • Li, W.H.1
  • 22
    • 0026529212 scopus 로고
    • Hemagglutinin mutations related to antigenic variation in H1 swine infuenza viruses
    • S-M Luoh MW Mcgregor VS Hinshaw 1992 Hemagglutinin mutations related to antigenic variation in H1 swine infuenza viruses J Virol 66 1066 1073
    • (1992) J Virol , vol.66 , pp. 1066-1073
    • Luoh, S.-M.1    McGregor, M.W.2    Hinshaw, V.S.3
  • 23
    • 0242713700 scopus 로고    scopus 로고
    • The dominance of the population by a selected few: Power-law behaviour applies to a wide variety of genomic properties
    • Luscombe N, Qian J, Zhang Z, Johnson T, Gerstein M (2002) The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties. Genome Biol 3(8)
    • (2002) Genome Biol , vol.3 , Issue.8
    • Luscombe, N.1    Qian, J.2    Zhang, Z.3    Johnson, T.4    Gerstein, M.5
  • 24
    • 0033856695 scopus 로고    scopus 로고
    • Early alterations of the receptor-binding properties of H1, H2, and H3 avian influenza virus hemagglutinins after their introduction into mammals
    • M Matrosovich A Tuzikov N Bovin A Gambaryan A Klimov MR Castrucci I Donatelli Y Kawaoka 2000 Early alterations of the receptor-binding properties of H1, H2, and H3 avian influenza virus hemagglutinins after their introduction into mammals J Virol 74 8502 8512
    • (2000) J Virol , vol.74 , pp. 8502-8512
    • Matrosovich, M.1    Tuzikov, A.2    Bovin, N.3    Gambaryan, A.4    Klimov, A.5    Castrucci, M.R.6    Donatelli, I.7    Kawaoka, Y.8
  • 25
    • 0031033277 scopus 로고    scopus 로고
    • Episodic adaptive evolution of primate lysozymes
    • W Messier CB Stewart 1997 Episodic adaptive evolution of primate lysozymes Nature 385 151 154
    • (1997) Nature , vol.385 , pp. 151-154
    • Messier, W.1    Stewart, C.B.2
  • 27
    • 0027020232 scopus 로고
    • The nearly neutral theory of molecular evolution
    • T Ohta 1992 The nearly neutral theory of molecular evolution Ann Rev Ecol Syst 23 263 286
    • (1992) Ann Rev Ecol Syst , vol.23 , pp. 263-286
    • Ohta, T.1
  • 28
    • 0030218056 scopus 로고    scopus 로고
    • The current significance and standing of neutral and nearly neutral theories
    • T Ohta 1996 The current significance and standing of neutral and nearly neutral theories Bioessays 18 673 677
    • (1996) Bioessays , vol.18 , pp. 673-677
    • Ohta, T.1
  • 30
    • 0022629646 scopus 로고
    • Polymorphism and evolution of influenza a virus genes
    • N Saitou M Nei 1986 Polymorphism and evolution of influenza A virus genes Mol Biol Evol 3 57 74
    • (1986) Mol Biol Evol , vol.3 , pp. 57-74
    • Saitou, N.1    Nei, M.2
  • 31
    • 0031012364 scopus 로고    scopus 로고
    • In search of molecular darwinism
    • PM Sharp 1997 In search of molecular darwinism Nature 385 111 112
    • (1997) Nature , vol.385 , pp. 111-112
    • Sharp, P.M.1
  • 34
    • 0032849322 scopus 로고    scopus 로고
    • A method for detecting positive selection at single amino acid sites
    • Y Suzuki T Gojobori 1999 A method for detecting positive selection at single amino acid sites Mol Biol Evol 16 1315 1328
    • (1999) Mol Biol Evol , vol.16 , pp. 1315-1328
    • Suzuki, Y.1    Gojobori, T.2
  • 35
    • 3042725369 scopus 로고    scopus 로고
    • New methods for detecting positive selection at single amino acid sites
    • Y Suzuki 2004 New methods for detecting positive selection at single amino acid sites J Mol Evol 59 11 19
    • (2004) J Mol Evol , vol.59 , pp. 11-19
    • Suzuki, Y.1
  • 36
    • 0019432165 scopus 로고
    • Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation
    • DC Wiley IA Wilson JJ Skehel 1981 Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation Nature 289 373 378
    • (1981) Nature , vol.289 , pp. 373-378
    • Wiley, D.C.1    Wilson, I.A.2    Skehel, J.J.3
  • 37
    • 0019890491 scopus 로고
    • Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 a resolution
    • IA Wilson JJ Skehel DC Wiley 1981 Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 A resolution Nature 289 366 373
    • (1981) Nature , vol.289 , pp. 366-373
    • Wilson, I.A.1    Skehel, J.J.2    Wiley, D.C.3
  • 38
    • 8544225780 scopus 로고    scopus 로고
    • Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites
    • WS Wong Z Yang N Goldman R Nielsen 2004 Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites Genetics 168 1041 1051
    • (2004) Genetics , vol.168 , pp. 1041-1051
    • Wong, W.S.1    Yang, Z.2    Goldman, N.3    Nielsen, R.4
  • 39
    • 0033692959 scopus 로고    scopus 로고
    • Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus a
    • Z Yang 2000 Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A J Mol Evol 51 423 432
    • (2000) J Mol Evol , vol.51 , pp. 423-432
    • Yang, Z.1
  • 40
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • Z Yang R Nielsen 2002 Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages Mol Biol Evol 19 908 917
    • (2002) Mol Biol Evol , vol.19 , pp. 908-917
    • Yang, Z.1    Nielsen, R.2
  • 41
    • 0032737463 scopus 로고    scopus 로고
    • Genealogical evidence for positive selection in the nef gene of HIV-1
    • PM Zanotto EG Kallas RF de Souza EC Holmes 1999 Genealogical evidence for positive selection in the nef gene of HIV-1 Genetics 153 1077 1089
    • (1999) Genetics , vol.153 , pp. 1077-1089
    • Zanotto, P.M.1    Kallas, E.G.2    De Souza, R.F.3    Holmes, E.C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.