Model for forward polymerization and switching transition between polymerase and exonuclease sites by DNA polymerase molecular motors

Archives of Biochemistry and Biophysics

Volumn 457, Issue 1, 2007, Pages 73-84

  Xie, Ping ^a,b  

^a ZHEJIANG SCI TECH UNIVERSITY   (China)

^b INSTITUTE OF PHYSICS   (China)

Author keywords

DNA polymerase; DNA replication; Molecular motor

Indexed keywords

DNA; DNA POLYMERASE; EXONUCLEASE; MOLECULAR MOTOR;

ARTICLE; BASE PAIRING; BINDING SITE; CRYSTAL STRUCTURE; DNA TEMPLATE; GENE SWITCHING; MISMATCH REPAIR; MODEL; POLYMERIZATION; PRIORITY JOURNAL;

BASE PAIRING; DNA REPLICATION; DNA-DIRECTED DNA POLYMERASE; EXONUCLEASES; MODELS, BIOLOGICAL; MOLECULAR MOTOR PROTEINS; STRESS, MECHANICAL;

EID: 33845751520     PISSN: 00039861     EISSN: 10960384     Source Type: Journal    
DOI: 10.1016/j.abb.2006.09.019     Document Type: Article

References (33)

1. Lodish H., Berk A., Zipursky S.L., Matsudaira P., Baltimore D., and Darnell J. Molecular Cell Biology. 4th ed. (2000), W.H. Freeman and Company, New York Chapter 12
2. Patel S.S., Wong I., and Johnson K.A. Biochemistry 30 (1991) 511-525
3. Wong I., Patel S.S., and Johnson K.A. Biochemistry 30 (1991) 526-537
4. Donlin M.J., Patel S.S., and Johnson K.A. Biochemistry 30 (1991) 538-546
5. Doublie S., Tabor S., Long A.M., Richardson C.C., and Ellenberger T. Nature 391 (1998) 251-258
6. Doublie S., and Ellenberger T. Curr. Opin. Struct. Biol. 8 (1998) 704-712
7. Kiefer J.R., Mao C., Braman J.C., and Beese L.S. Nature 391 (1998) 304-307
8. Li Y., Korolev S., and Waksman G. EMBO. J. 17 (1998) 7514-7525
9. Bustamante C., Smith S.B., Liphardt J., and Smith D. Curr. Opin. Struct. Biol. 10 (2000) 279-285
10. Block S.M., Goldstein L.S., and Schnapp B.J. Nature 348 (1990) 348-352
11. Mehta A.D., Rock R.S., Rief M., Spudich J.A., Mooseker M.S., and Cheney R.E. Nature 400 (1999) 590-593
12. Abbondanzieri1 E.A., Greenleaf W.J., Shaevitz J.W., Landick R., and Block S.M. Nature 438 (2005) 460-465
13. Thomen P., Lopez P.J., and Heslot F. Phys. Rev. Lett. 94 (2005) 128102
14. Wuite G.J.L., Smith S.B., Young M., Keller D., and Bustamante C. Nature 404 (2000) 103-106
15. Maier B., Bensimon D., and Croquette V. Proc. Natl. Acad. Sci. USA 97 (2000) 12002-12007
16. Goel A., Frank-Kamenetskii M.D., Ellenberger T., and Herschbach D. Proc. Natl Acad. Sci. USA 98 (2001) 8485-8489
17. Goel A., Astumian R.D., and Herschbach D. Proc. Natl. Acad. Sci. USA 100 (2003) 9699-9704
18. Lohman T.M., and Bjornson K.P. Annu. Rev. Biochem. 65 (1996) 169-214
19. Bird L.E., Subramanya H.S., and Wigley D.B. Curr. Opin. Struc. Biol. 8 (1998) 14-18
20. Tabor S., Huber H.E., and Richardson C.C. J. Biol. Chem. 262 (1987) 16212-16223
21. Kong X.-P., Onrust R., O'Donnell M., and Kuriyan J. Cell 69 (1992) 425-437
22. Krahn J.M., Beard W.A., and Wilson S.H. Structure 12 (2004) 1823-1832
23. Kramers H.A. Physika 7 (1940) 284-304
24. Carver Jr. T.E., Hochstrasser R.A., and Millar D.P. Proc. Natl Acad. Sci. USA 91 (1994) 10670-10674
25. Fersht A.R., Knill-Jones J.W., and Tsui W.C. J. Mol. Biol. 156 (1982) 37-51
26. Johnson K.A. Annu. Rev. Biochem. 62 (1993) 685-713
27. Dahlberg M.E., and Benkovic S.J. Biochemistry 30 (1991) 4835-4843
28. Gurrieri S., Smith S.B., and Bustamante C. Proc. Natl. Acad. Sci. USA 96 (1999) 453-458
29. Bailey M.F., van der Schans E.J.C., and Millar D.P. J. Mol. Biol. 336 (2004) 673-693
30. Kuroita T., Matsumura H., Yokota N., Kitabayashi M., Hashimoto H., Inoue T., Imanaka T., and Kai Y. J. Mol. Biol. 351 (2005) 291-298
31. Kafri Y., Lubensky D.K., and Nelson D.R. Biophys. J. 86 (2004) 3373-3391
32. Uptain S.M., Kane C.M., and Chamberlin M.J. Annu. Rev. Biochem. 66 (1997) 117-172
33. Herbert K.M., La Porta A., Wong B.J., Mooney R.A., Neuman K.C., Landick R., and Block S.M. Cell 125 (2006) 1083-1094