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Volumn 12, Issue 5, 2006, Pages 1251-1258

Visualization and analysis of large data collections: A case study applied to confocal microscopy data

Author keywords

Biomedical visualization; Features in volume data sets; Large data set visualization

Indexed keywords

BIOMEDICAL VISUALIZATION; CONFOCAL MICROSCOPY; FEATURES IN VOLUME DATA SETS; LARGE DATA SET VISUALIZATION;

EID: 33845644113     PISSN: 10772626     EISSN: None     Source Type: Journal    
DOI: 10.1109/TVCG.2006.195     Document Type: Conference Paper
Times cited : (11)

References (30)
  • 1
    • 33749434347 scopus 로고    scopus 로고
    • VisTrails: Enabling interactive multiple-view visualizations
    • C. Silva, E. Gröller, and H. Rushmeier, editors, Los Alamitos (CA). IEEE Computer Society Press
    • L. Bavoil, S. P. Callahan, P. J. Crossno, J. Freire, C. E. Scheidegger, C. T. Silva, and H. T. Vo. VisTrails: Enabling interactive multiple-view visualizations. In C. Silva, E. Gröller, and H. Rushmeier, editors, Proceedings IEEE Visualization 2005, pages 135-142, Los Alamitos (CA), 2005. IEEE Computer Society Press.
    • (2005) Proceedings IEEE Visualization 2005 , pp. 135-142
    • Bavoil, L.1    Callahan, S.P.2    Crossno, P.J.3    Freire, J.4    Scheidegger, C.E.5    Silva, C.T.6    Vo, H.T.7
  • 3
    • 84860055831 scopus 로고    scopus 로고
    • Bitplane. http://www.bitplane.com/.
  • 6
    • 0037439634 scopus 로고    scopus 로고
    • Polycomb group gene silencing proteins are concentrated in the perichromatin compartment of the mammalian nucleus
    • D. Cmarko, P. Verschure, A. Otte, R. van Driel, and S. Fakan. Polycomb group gene silencing proteins are concentrated in the perichromatin compartment of the mammalian nucleus. Journal of Cell Science, 116:335-343, 2003.
    • (2003) Journal of Cell Science , vol.116 , pp. 335-343
    • Cmarko, D.1    Verschure, P.2    Otte, A.3    Van Driel, R.4    Fakan, S.5
  • 8
    • 0034447420 scopus 로고    scopus 로고
    • Visualization of time dependent confocal microscopy data
    • T. Ertl, B. Hamann, and A. Varshney, editors, Los Alamitos (CA). IEEE Computer Society Press
    • W. de Leeuw, R. van Liere, P. Verschure, A. Visser, E. Manders, and R. van Driel. Visualization of time dependent confocal microscopy data. In T. Ertl, B. Hamann, and A. Varshney, editors, Proceedings IEEE Visualization 2000, pages 473-476, Los Alamitos (CA), 2000. IEEE Computer Society Press.
    • (2000) Proceedings IEEE Visualization 2000 , pp. 473-476
    • De Leeuw, W.1    Van Liere, R.2    Verschure, P.3    Visser, A.4    Manders, E.5    Van Driel, R.6
  • 9
    • 84882878737 scopus 로고    scopus 로고
    • Amira - A highly interactive system for visual data analysis
    • C. Johnson and C. Hansen, editors. Elsevier
    • H.-C. D.Stalling, M.Westerhoff. Amira - a highly interactive system for visual data analysis. In C. Johnson and C. Hansen, editors, The Visualization Handbook, pages 749-767. Elsevier, 2005.
    • (2005) The Visualization Handbook , pp. 749-767
    • Stalling, H.-C.D.1    Westerhoff, M.2
  • 10
    • 0032267911 scopus 로고    scopus 로고
    • Image-based transfer function design for data exploration in volume visualization
    • D. Ebert, H. Hagen, and H. Rushmeier, editors. IEEE Computer Society Press
    • S. Fang, T. Biddlecome, and M. Tuceryan. Image-based transfer function design for data exploration in volume visualization. In D. Ebert, H. Hagen, and H. Rushmeier, editors, Proceedings IEEE Visualization '98, pages 319-326. IEEE Computer Society Press, 1998.
    • (1998) Proceedings IEEE Visualization '98 , pp. 319-326
    • Fang, S.1    Biddlecome, T.2    Tuceryan, M.3
  • 12
    • 84976764337 scopus 로고
    • An annotated bibliography of interactive program steering
    • W. Gu, J. Vetter, and K. Schwan. An annotated bibliography of interactive program steering. SIGPLAN Notices, 29(9):140-148, 1994.
    • (1994) SIGPLAN Notices , vol.29 , Issue.9 , pp. 140-148
    • Gu, W.1    Vetter, J.2    Schwan, K.3
  • 13
    • 0037072601 scopus 로고    scopus 로고
    • Molecular biology: Chromatin higher order folding: Wrapping up transcription
    • P. Horn and C. Peterson. Molecular biology: Chromatin higher order folding: Wrapping up transcription. Science, 297:1824-1827, 2002.
    • (2002) Science , vol.297 , pp. 1824-1827
    • Horn, P.1    Peterson, C.2
  • 14
    • 0022140354 scopus 로고
    • The plane with parallel coordinates
    • A. Inselberg. The plane with parallel coordinates. The Visual Computer, 1:69-91, 1985.
    • (1985) The Visual Computer , vol.1 , pp. 69-91
    • Inselberg, A.1
  • 15
    • 84860038964 scopus 로고    scopus 로고
    • ITK. http://www.itk.org.
  • 16
    • 0037372003 scopus 로고    scopus 로고
    • Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals
    • R. Jaenisch and A. Bird. Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat. Genet, 33:245-254, 2003.
    • (2003) Nat. Genet , vol.33 , pp. 245-254
    • Jaenisch, R.1    Bird, A.2
  • 17
    • 0035385556 scopus 로고    scopus 로고
    • Visualization exploration and encapsulation via a spreadsheet-like interface
    • July/September
    • T. Jankun-Kelly and K.-L. Ma. Visualization exploration and encapsulation via a spreadsheet-like interface. IEEE Transactions on Visualization and Computer Graphics, 7(3):275-287, July/September 2001.
    • (2001) IEEE Transactions on Visualization and Computer Graphics , vol.7 , Issue.3 , pp. 275-287
    • Jankun-Kelly, T.1    Ma, K.-L.2
  • 18
    • 0034449076 scopus 로고    scopus 로고
    • A spreadsheet interface for visualization exploration
    • T. Ertl, B. Hamann, and A. Varshney, editors. IEEE Computer Society, October
    • T. J. Jankun-Kelly and K.-L. Ma. A spreadsheet interface for visualization exploration. In T. Ertl, B. Hamann, and A. Varshney, editors, Proceedings IEEE Visualization 2000, pages 69-76. IEEE Computer Society, October 2000.
    • (2000) Proceedings IEEE Visualization 2000 , pp. 69-76
    • Jankun-Kelly, T.J.1    Ma, K.-L.2
  • 19
    • 0025541790 scopus 로고
    • Volume visualization in cell biology
    • A. Kaufman, editor. IEEE Computer Society Press, October
    • A. Kaufman, R. Yagel, R. Bakalash, and I. Spector. Volume visualization in cell biology. In A. Kaufman, editor, Proceedings IEEE Visualization '90, pages 160-167. IEEE Computer Society Press, October 1990.
    • (1990) Proceedings IEEE Visualization '90 , pp. 160-167
    • Kaufman, A.1    Yagel, R.2    Bakalash, R.3    Spector, I.4
  • 20
    • 0033739324 scopus 로고    scopus 로고
    • Analysis of the 3d spatial organization of cells and sub cellular structures in tissue
    • D. Parkas and R. Leif, editors
    • D. Knowles, C. O. de Solorzano, and S. Lockett. Analysis of the 3d spatial organization of cells and sub cellular structures in tissue. In D. Parkas and R. Leif, editors, Proceedings of SPIE Vol. 3921, pages 66-73, 2000.
    • (2000) Proceedings of SPIE Vol. 3921 , pp. 66-73
    • Knowles, D.1    De Solorzano, C.O.2    Lockett, S.3
  • 21
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 Å resolution
    • K. Luger, A. Mader, R. Richmond, D. Sargent, and T. Richmond. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature, 389:251-260, 1997.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.2    Richmond, R.3    Sargent, D.4    Richmond, T.5
  • 22
    • 0030413289 scopus 로고    scopus 로고
    • Visualization of laser confocal microscopy datasets
    • R. Yagel and G. Nielson, editors. IEEE Computer Society Press
    • G. Sakas, M. Vicker, and P. Plath. Visualization of laser confocal microscopy datasets. In R. Yagel and G. Nielson, editors, Proceedings IEEE Visualization '96, pages 375-380. IEEE Computer Society Press, 1996.
    • (1996) Proceedings IEEE Visualization '96 , pp. 375-380
    • Sakas, G.1    Vicker, M.2    Plath, P.3
  • 23
    • 0242287927 scopus 로고    scopus 로고
    • The eukaiyotic genome: A system regulated at different hierarchical levels
    • R. van Driel, P. Fransz, and P. Verschure. The eukaiyotic genome: a system regulated at different hierarchical levels. Journal of Cell Science, 116:4067-4075, 2003.
    • (2003) Journal of Cell Science , vol.116 , pp. 4067-4075
    • Van Driel, R.1    Fransz, P.2    Verschure, P.3
  • 24
    • 9444241024 scopus 로고    scopus 로고
    • Positioning the genome within the nucleus
    • P. Verschure. Positioning the genome within the nucleus. Biol. Cell, 96:569-577, 2004.
    • (2004) Biol. Cell , vol.96 , pp. 569-577
    • Verschure, P.1
  • 26
    • 0036798795 scopus 로고    scopus 로고
    • Large-scale chromatin organization and the localization of proteins involved in gene expression in human cells
    • P. Verschure, I. van der Kraan, J. Enserink, M. Mone, E. Manders, and R. van Driel. Large-scale chromatin organization and the localization of proteins involved in gene expression in human cells. J.Histochem. Cytochem, 50:1303-1312, 2002.
    • (2002) J. Histochem. Cytochem , vol.50 , pp. 1303-1312
    • Verschure, P.1    Van Der Kraan, I.2    Enserink, J.3    Mone, M.4    Manders, E.5    Van Driel, R.6
  • 27
    • 0033523776 scopus 로고    scopus 로고
    • Spatial relationship between transcription sites and chromosome territories
    • P. Verschure, I. van der Kraan, E. Manders, and R. van Driel. Spatial relationship between transcription sites and chromosome territories. J. Cell Biology, 147:13-24, 1999.
    • (1999) J. Cell Biology , vol.147 , pp. 13-24
    • Verschure, P.1    Van Der Kraan, I.2    Manders, E.3    Van Driel, R.4
  • 28
    • 84860055827 scopus 로고    scopus 로고
    • VolView
    • VolView. http://www.kitware.com/products/volview.html.
  • 29
    • 84860055828 scopus 로고    scopus 로고
    • Voxblast
    • Voxblast. http://www.vaytek.com/voxblast.html.
  • 30
    • 85123297746 scopus 로고    scopus 로고
    • Segmentation of biological volume datasets using a level set framework
    • A. Kaufman, editor, Vienna. Springer
    • R. Whitaker, D. Breen, K. Museth, and N. Soni. Segmentation of biological volume datasets using a level set framework. In A. Kaufman, editor, Volume Graphics, pages 249-263, Vienna, 2001. Springer.
    • (2001) Volume Graphics , pp. 249-263
    • Whitaker, R.1    Breen, D.2    Museth, K.3    Soni, N.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.