Bypassing of a polygenic Microcyclus ulei resistance in rubber tree, analyzed by QTL detection

New Phytologist

Volumn 173, Issue 2, 2007, Pages 335-345

  Le Guen, V ^a   Garcia, D ^a,b   Mattos, C R R ^c   Doare F ^a   Lespinasse, D ^d   Seguin, M ^a  

^a CIRAD   (France)

^b DEPARTAMENTO DE CIÊNCIAS BIOLÓGICAS   (Brazil)

^c Plantca̧ões Michelin Da Bahia ^*  (Brazil)

^d Syngenta Seeds SAS   (France)

Author keywords

Hevea spp.; Mapping population; Microcyclus ulei; Polygenic resistance; Quantitative trait locus; South American leaf blight (SALB)

Indexed keywords

ANGIOSPERM; CULTIVAR; DISEASE RESISTANCE; FUNGAL DISEASE; FUNGUS; GENETIC ANALYSIS; GENOTYPE; QUANTITATIVE ANALYSIS; RUBBER;

ARTICLE; ASCOMYCETES; GENETICS; HEVEA; MICROBIOLOGY; PATHOGENICITY; PHYSIOLOGY; PLANT DISEASE; QUANTITATIVE TRAIT LOCUS;

ASCOMYCOTA; HEVEA; PLANT DISEASES; QUANTITATIVE TRAIT LOCI;

HEVEA; HEVEA BENTHAMIANA; HEVEA BRASILIENSIS; MICROCYCLUS ULEI;

EID: 33845611586     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/j.1469-8137.2006.01911.x     Document Type: Article

References (45)

1. Bernardo R. 2004. What proportion of declared QTL in plants are false? Theoretical and Applied Genetics 109: 419-424.
2. Bos H, McIndoe KG. 1965. Breeding of Hevea for resistance against Dothidella ulei P. Henn. Journal of the Rubber Research Institute of Malaya 19: 98-107.
3. Brown JKM. 2003. Little else but parasites. Science 299: 1680-1681.
4. Calenge F, Faure AGM, Gebhardt C, Van de Weg WE, Parisi L, Durel CE. 2004. Quantitative trait loci analysis reveals both broad-spectrum and isolate-specific QTL for SCAB resistance in apple progeny challenged with eight isolates of Venturia inaequalis. Phytopathology 94: 370-379.
5. Calenge F, Van der Linden CG, Van de Weg E, Schouten HJ, van Arkel G, Denancé C, Durel CE. 2005. Resistance gene analogues identified through the NBS-profiling method map close to major genes and QTL for disease resistance in apple. Theoretical and Applied Genetics 110: 660-668.
6. Cervera MT, Gusmao J, Steenackers M, Peteman J, Storme V, Broeck AVD, Montagu AV, Boerjan W. 1996. Identification of AFLP molecular markers for resistance against Melampsora larici-populina in populus. Theoretical and Applied Genetics 93: 733-737.
7. Chee KH, Darmono TW, Kai-ming Z, Lieberei R. 1985. Leaf development and spore production and germination after infection of Hevea leaves by Microcyclus ulei. Journal of the Rubber Research Institute of Malaysia 33: 124-137.
8. Churchill GA, Doerge RW. 1994. Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
9. Durel CE, Parisi L, Laurens F, Van de Weg WE, Liebhard R, Jourjon MF. 2003. Genetic dissection of partial resistance to race 6 of Venturia inaequalis in apple. Genome 46: 224-234.
10. Fernando RL, Nettleton D, Southey BR, Dekkers JCM, Rothschild MF, Soller M. 2004. Controlling the proportion of false positives in multiple dependent tests. Genetics 166: 611-619.
11. Flor HH. 1971. Current status of the gene-for-gene concept. Annual Review of Phytopathology 8: 275-296.
12. Garcia D, Cazaux E, Rivano F, Auzac Jd. 1995. Chemical and structural barriers to Microcyclus ulei, the agent of South American leaf blight. Hevea spp. European Journal of Forest Pathology 25: 282-292.
13. Gasparotto L, Lim TM. 1984. Research on SALB (Microcyclus ulei) in Brazil - recent progress. International SALB Workshop, CEPLAC/CEPEC, Itabuna, August 1984. Itabuna, Brazil: CEPLAC/CEPEC, 1-19.
14. Gasparotto L, Lima MIPM. 1991. Research on South American leaf blight (Microcyclus ulei) of rubber in Brazil. Indian Journal of Natural Rubber Research 4: 83-90.
15. Gonçalves PS. 1981. Expedição internacional à Amazonia no território federal de Rondônia para a coleta de material botânico de seringueira Hevea brasiliensis. Manaus, Brazil: Embrapa - CNPSD.
16. Hashim I, Pereira JCR. 1989. Influence of resistance of Hevea on development of Microcyclus ulei. Journal of Natural Rubber Research 4: 212-218.
17. Jansen RC. 1993. Interval mapping of multiple quantitative trait loci. Genetics 135: 205-211.
18. Jorge V, Dowkiw A, Faivre-Rampant P, Bastien C. 2005. Genetic architecture of qualitative and quantitative Melampsora larici-populina leaf rust resistance in hybrid poplar: genetic mapping and QTL detection. New Phytologist 167: 113-127.
19. Junqueira NTV, Chaves GM, Zambolim L, Alfenas AC, Gasparotto L. 1988. Reaçao de clones de seringueira a varios isolados de Microcyclus ulei. Pesquisa Agropecuaria Brasileira 23: 877-893.
20. Junqueira NTV, Kalil Filho AN, Trindade DR. 1987. Fatores relacionados com a resistência da seringueira ao mal-das-folhas. Pesquisa Em Andamento 54: 1-6.
21. Junqueira NTV, Lieberei R, Kalil Filho AN, Lima MIPM. 1990. Components of partial resistance in Hevea clones to rubber tree leaf blight, caused by Microcyclus ulei. Fitopatologia Brasileira 15: 211-214.
22. Kolmer JA. 1996. Genetics of resistance to wheat leaf rust. Annual Review of Phytopathology 34: 435-455.
23. Lander ES, Botstein D. 1989. Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199.
24. Le Guen V, Garcia D, Mattos CRR, Clément-Demange A. 2002. Evaluation of field resistance to Microcyclus ulei of a collection of Amazonian rubber tree (Hevea brasiliensis) germplasm. Crop Breeding and Applied Biotechnology 2: 141-148.
25. Le Guen V, Lespinasse D, Oliver G, Rodier-Goud M, Pinard F, Seguin M. 2003. Molecular mapping of genes conferring field resistance to South American Leaf Blight (Microcyclus ulei) in rubber tree. Theoretical and Applied Genetics 108: 160-167.
26. Le Guen V, Rodier-Goud M, Troispoux V, Xiong T-C, Brottier P, Billot C, Seguin M. 2004. Characterization of polymorphic microsatellite markers for Microcyclus ulei, causal agent of South American leaf blight of rubber trees. Molecular Ecology Notes 4: 122-124.
27. Lebowitz RJ, Soller M, Beckmann JS. 1987. Trait-based analyses for the detection of linkage between marker loci and quantitative trait loci in crosses between inbred lines. Theoretical and Applied Genetics 73: 556-562.
28. Lee H, Dekkers JCM, Soller M, Malek M, Fernando RL, Rothschild MF. 2002. Application of the false discovery rate to quantitative trait loci interval mapping with multiple traits. Genetics 161: 905-914.
29. Lefèvre F, Pichot C, Pinon J. 1994. Intra- and interspecific inheritance of some components of the resistance to leaf rust (Melampsora larici-populina Kleb.) in poplars. Theoretical and Applied Genetics 88: 501-507.
30. Lespinasse D, Grivet L, Troispoux V, Rodier-Goud M, Pinard F, Seguin M. 2000b. Identification of QTLs involved in the resistance to South American leaf blight (Microcyclus ulei) in the rubber tree. Theoretical and Applied Genetics 100: 975-984.
31. Lespinasse D, Rodier-Goud M, Grivet L, Leconte A, Legnate H, Seguin M. 2000a. A saturated genetic linkage map of rubber tree (Hevea spp.) based on RFLP, AFLP, microsatellite, and isozyme markers. Theoretical and Applied Genetics 100: 127-138.
32. Lins ACR, Silva G, Pd Nicolas D. 1981. Report of the Acre team in joint IRRDB/Brazil germplasm expedition. Manaus, Brazil: Embrapa/CNPSD.
33. Mattos CRR, Garcia D, Pinard F, Le Guen V. 2003. Variabilidade de isolados de Microcyclus ulei no sudeste da Bahia. Fitopatologia Brasileira 28: 502-507.
34. Olivier JM, Lespinasse Y. 1982. Résistance du pommier à la tavelure Venturia inaequalis (CKE.) Wint. Sources de résistance, comportement du parasite, programme de sélection. Cryptogamie, Mycologie 3: 361-375.
35. Paiva J, Rd. 1981. Coleta de material sexuado e assexuado nos seringais nativos do Estado de Mato Grosso. Manaus, Brazil: Embrapa/CNPSD.
36. Peralta AM, Furtado EL, Amorim L, Menten JOM, Bergamin Filho A. 1990. Melhoramento para resistência ao mal das folhas da seringueira: revisao. Summa Phytopathologica 16: 214-224.
37. Pinon J, Frey P. 1997. Structure of Melampsora larici-populina populations on wild and cultivated poplar. European Journal of Plant Pathology 103: 159-173.
38. Prakash CS, Heather WA. 1989. Inheritance of partial resistance to two races of leaf rust, Melampsora medusae. Eastern cottonwood, Populus deltoides. Silvae Genetica 38: 90-94.
39. Rivano F. 1992. La maladie sud-américaine des feuilles de l'hévéa. Etude, en conditions naturelles et contrôlé es, des composants de la résistance partielle à Microcyclus ulei (P. Henn.). Arx, France: Université de Paris-Sud, centre d'Orsay, 1-232.
40. SAS Institute. 2001. SAS/STAT user's guide, version 8.02, Vol. I, II, III. Cary, NC, USA: SAS Institute Inc.
41. Tabor GM, Kubisiak TL, Klopfenstein NB, Hall RB, MacNabb HSJ. 2000. Bulked segregant analysis identifies molecular markers linked to Melampsora medusae resistance in Populus deltoides. Phytopathology 90: 1039-1042.
42. Townsend CHT. 1960. Progress in developing superior hevea clones in Brazil. Economic Botany 14: 189-196.
43. Van Ooijen JW. 1999. LOD significance thresholds for QTL analysis in experimental populations of diploid species. Heredity 83: 613-624.
44. Van Ooijen JW. 2004. MapQTL® 5, Software for the mapping of quantitative trait loci in experimental populations. Wageningen, the Netherlands: Kyazma BV.
45. Villar M, Lefèvre F, Bradshaw HDJ, Teissier du Cros E. 1996. Molecular genetics of rust resistance in poplars (Melampsora larici-populina Kleb/Populus sp.) by bulk segregant analysis in a 2x2 factorial mating design. Genetics 143: 531-536.