Phelogenetic tree construction using self adaptive ant colony algorithm

First International Multi- Symposiums on Computer and Computational Sciences, IMSCCS'06

Volumn 1, Issue , 2006, Pages 179-186

  Qin, Ling ^a   Luo, Jianli ^b   Chen, Zhimin ^c   Guo, Jing ^c   Chen, Ling ^c   Pan, Yi ^d  

^a NANJING UNIVERSITY OF AERONAUTICS AND ASTRONAUTICS   (China)

^b WENZHOU UNIVERSITY   (China)

^c YANGZHOU UNIVERSITY   (China)

^d University of Georgia ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTIVE ALGORITHMS; GENES; GENETIC ALGORITHMS; HEURISTIC METHODS; OPTIMIZATION; PROTEINS; TREES (MATHEMATICS);

ANT COLONY OPTIMIZATION; DIGRAPH; PHYLOGENETIC CLUSTERING ALGORITHMS; PHYLOGENETIC TREE CONSTRUCTING METHODS;

DNA SEQUENCES;

EID: 33845585265     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IMSCCS.2006.104     Document Type: Conference Paper

References (13)

1. T. Hodge, M. J. T. V. Cope, "A myosin family tree," Journal of Cell Science, Vol. 113, 2000, pp. 3353-3354.
2. N. Saitou and M. Nei, "The neighbor-joining method: A new method for reconstructing phylogenetic trees," Molecular Biology and Evolution, Vol. 4, 1987, pp. 406-425.
3. T. H. Reijmers et al., "Using genetic algorithms for the construction of phylogenetic trees: application to G-protein coupled receptor sequences," Biosystems, Vol. 49, 1999, pp. 31-43.
4. B. Hao and J. Qi, "Prokaryote phytogeny without sequence alignment: from avoidance signature to composition distance," in Proceeding? of the 2003 IEEE Bioinformatics Conference, 2003, pp. 375-385.
5. W. Xiaomeng, W. Xiufeng, W. Gang, X. Dong, and L. Guohui, "Phylogenetic analysis using complete signature information of whole genomes and clustered neighbor-joining method," Int. J. Bioinformatic and Research and Applications, 2005
6. X. Wu, X.-F. Wan, D. Xu, G. H. Lin, "Whole genome phylogeny based on clustered signature string composition," in Posters in 2005 IEEE Computational Systems Bioinformatics Conference (CSB2005), 2005, pp. 53-54.
7. M. Dorigo, V. Maniezzo, and A. Colomi, "Ant system: Optimization by a colony of cooperating agents," IEEE Transactions on Systems, Man, and Cybernetics-Part B, Vol. 26, 1996, pp. 29-41.
8. C. Ling, S. Jie, and Q. Ling, "An adaptive ant colony algorithm based on equilibrium of distribution," Journal of Software, Vol. 14, 2003, pp. 1148-1151.
9. E. Herniou, T. Luque, X. Chen, J. Vlak, D. Winstanley, J. Cory, and D.O'Reilly, "Use of whole genome sequence data to infer baculovirus phylogency," Journal of Virology, Vol. 75, 2001, pp. 8117-8126.
10. S. Grumbach and F. Tahi, "A new challenge for compression algorithms: genetic sequences," Journal of Information Processing Management, Vol. 30, 1994, pp. 875-866.
11. P. Kuntz and D. Snyder, "New results on ant-based heuristic for highlighting the organization of large graphs," in Proceedings of the 1999 Congress or Evolutionary Computation, IEEE Press, Piscataway, NJ, 1999, pp. 1451-1458.
12. V. Ramos, and J. J. Merelo, "Self-organized stigmergic document maps: environment as a mechanism for context learning, in E. Alba, F. Herrera, J. J. Merelo et al. (eds.), AEB'02 - 1st Int. Conf. on Metaheuristics, Evolutionary and Bio-Inspired Algorithms, Mérida, Spain, 6-8 Feb. 2002, pp. 284-293.
13. D. Richard and G. Olivier, "Fast and accurate phylogeny reconstruction algorithm based on the minimum-evolution principle," WABI2002, LNCS2452, 2002, pp. 357-374.