Whole genome phylogeny based on clustered signature string composition

2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts

Volumn , Issue , 2005, Pages 53-54

  Wu, Xiaomeng ^a   Lin, Guohui ^a   Wan, Xiu Feng ^b   Xu, Dong ^b  

^a UNIVERSITY OF ALBERTA   (Canada)

^b Department of Electrical Engineering and Computer Science   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; DATA STRUCTURES; MUTAGENESIS; PROTEINS;

COMPOSITION VECTORS; EVOLUTIONARY TREE; PHYLOGENETIC ANALYSIS;

GENETIC ENGINEERING;

EID: 33748773242     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CSBW.2005.143     Document Type: Conference Paper

References (6)

1. E. V. Koonin. The emerging paradigm and open problems in comparative genomics. Bioinformatics, 15:265-266, 1999.
2. W. Li, W. Fang, L. Ling, J. Wang, Z. Xuan, and R. Chen. Phylogeny based on whole genome as inferred from complete information set analysis. Journal of Biological Physics, 28:439-447, 2002.
3. J. Qi, B. Wang, and B.-L. Hao. Whole proteome prokaryote phylogeny without sequence alignment: a k-string composition approach. Journal of Molecular Evolution, 58:1-11, 2004.
4. N. Saitou and M. Nei. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4:406-425, 1987.
5. G. Stuart, K. Moffet, and J. Leader. A comprehensive vertebrate phylogeny using vector representation of protein sequences from whole genomes. Molecular Biology and Evolution, 19:554-562, 2002.
6. X. Wu, X. Wan, G. Wu, D. Xu, and G.-H. Lin. Whole genome phylogeny construction via complete composition vectors. Technical Report TR05-06, Department of Computing Science, University of Alberta, January 2005.