-
1
-
-
0038286153
-
Genomewide transcriptional changes associated with genetic alterations and nutritional supplementation affecting tryptophan metabolism in Bacillus subtilis
-
Berka, R. M., X. Cui, and C. Yanofsky. 2003. Genomewide transcriptional changes associated with genetic alterations and nutritional supplementation affecting tryptophan metabolism in Bacillus subtilis. Proc. Natl. Acad. Sci. USA 100:5682-5687.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5682-5687
-
-
Berka, R.M.1
Cui, X.2
Yanofsky, C.3
-
2
-
-
1842509905
-
Assessment of 35mer amino-modified oligonucleotide based microarray with bacterial samples
-
Calevro, F., H. Charles, N. Rejmond, V. Dugas, J. P. Cloarec, J. Bernillon, Y. Rahbe, G. Febvay, and J. M. Fayard. 2004. Assessment of 35mer amino-modified oligonucleotide based microarray with bacterial samples. J. Microbiol. Methods 57:207-218.
-
(2004)
J. Microbiol. Methods
, vol.57
, pp. 207-218
-
-
Calevro, F.1
Charles, H.2
Rejmond, N.3
Dugas, V.4
Cloarec, J.P.5
Bernillon, J.6
Rahbe, Y.7
Febvay, G.8
Fayard, J.M.9
-
3
-
-
33750084717
-
Codon usage bias and tRNA over-expression in Buchnera aphidicola after aromatic amino acid nutritional stress on its host Acyrthosiphon pisum
-
Charles, H., F. Calevro, J. Vinuelas, J. M. Fayard, and Y. Rahbe. 2006. Codon usage bias and tRNA over-expression in Buchnera aphidicola after aromatic amino acid nutritional stress on its host Acyrthosiphon pisum. Nucleic Acids Res. 34:4583-4592.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 4583-4592
-
-
Charles, H.1
Calevro, F.2
Vinuelas, J.3
Fayard, J.M.4
Rahbe, Y.5
-
4
-
-
24144445705
-
Improved statistical tests for differential gene expression by shrinking variance components estimates
-
Cui, X., J. T. Hwang, J. Qiu, N. J. Blades, and G. A. Churchill. 2005. Improved statistical tests for differential gene expression by shrinking variance components estimates. Biostatistics 6:59-75.
-
(2005)
Biostatistics
, vol.6
, pp. 59-75
-
-
Cui, X.1
Hwang, J.T.2
Qiu, J.3
Blades, N.J.4
Churchill, G.A.5
-
5
-
-
1442302294
-
Exploring the regulation of tRNA distribution on the genomic slide
-
Dittmar, K., E. Mobley, A. Radek, and T. Pan. 2004. Exploring the regulation of tRNA distribution on the genomic slide. J. Mol. Biol. 337:31-47.
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 31-47
-
-
Dittmar, K.1
Mobley, E.2
Radek, A.3
Pan, T.4
-
6
-
-
0037381650
-
Regulation of gene expression by histone-like proteins in bacteria
-
Dorman, C. J., and P. Deighan. 2003. Regulation of gene expression by histone-like proteins in bacteria. Curr. Opin. Genet. Dev. 13:179-184.
-
(2003)
Curr. Opin. Genet. Dev.
, vol.13
, pp. 179-184
-
-
Dorman, C.J.1
Deighan, P.2
-
7
-
-
84989869311
-
Buchnera bacteria and other symbionts of aphids
-
K. Bourtzis and T. A. Miller (ed.). CRC Press Inc., Boca Raton, Fla.
-
Douglas, A. E. 2003. Buchnera bacteria and other symbionts of aphids, p. 23-38. In K. Bourtzis and T. A. Miller (ed.), Insect symbiosis. CRC Press Inc., Boca Raton, Fla.
-
(2003)
Insect Symbiosis
, pp. 23-38
-
-
Douglas, A.E.1
-
8
-
-
0035141180
-
Quantifying nutrient production by the microbial symbionts in an aphid
-
Douglas, A. E., L. B. Minto, and T. L. Wilkinson. 2001. Quantifying nutrient production by the microbial symbionts in an aphid. J. Exp. Biol. 204:349-358.
-
(2001)
J. Exp. Biol.
, vol.204
, pp. 349-358
-
-
Douglas, A.E.1
Minto, L.B.2
Wilkinson, T.L.3
-
9
-
-
33646742463
-
Sweet problems: Insect traits defining the limits to dietary sugar utilisation by the pea aphid, Acyrthosiphon pisum
-
Douglas, A. E., D. R. Price, L. B. Minto, E. Jones, K. V. Pescod, C. L. Francois, J. Pritchard, and N. Boonham. 2006. Sweet problems: insect traits defining the limits to dietary sugar utilisation by the pea aphid, Acyrthosiphon pisum. J. Exp. Biol. 209:1395-1403.
-
(2006)
J. Exp. Biol.
, vol.209
, pp. 1395-1403
-
-
Douglas, A.E.1
Price, D.R.2
Minto, L.B.3
Jones, E.4
Pescod, K.V.5
Francois, C.L.6
Pritchard, J.7
Boonham, N.8
-
10
-
-
26444621352
-
Why highly expressed proteins evolve slowly
-
Drummond, D. A., J. D. Bloom, C. Adami, C. O. Wilke, and F. H. Arnold. 2005. Why highly expressed proteins evolve slowly. Proc. Natl. Acad. Sci. USA 102:14338-14343.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 14338-14343
-
-
Drummond, D.A.1
Bloom, J.D.2
Adami, C.3
Wilke, C.O.4
Arnold, F.H.5
-
11
-
-
0036376993
-
Statistical methods for identifying genes with differential expression in replicated cDNA microarray experiments
-
Dudoit, S., Y. H. Yang, M. J. Callow, and T. Speed. 2002. Statistical methods for identifying genes with differential expression in replicated cDNA microarray experiments. Statistica Sinica 12:111-139.
-
(2002)
Statistica Sinica
, vol.12
, pp. 111-139
-
-
Dudoit, S.1
Yang, Y.H.2
Callow, M.J.3
Speed, T.4
-
12
-
-
0027161418
-
Growth-rate-dependent accumulation of twelve tRNA species in Escherichia coli
-
Emilsson, V., A. K. Naslund, and C. G. Kurland. 1993. Growth-rate-dependent accumulation of twelve tRNA species in Escherichia coli. J. Mol. Biol. 230:483-491.
-
(1993)
J. Mol. Biol.
, vol.230
, pp. 483-491
-
-
Emilsson, V.1
Naslund, A.K.2
Kurland, C.G.3
-
13
-
-
0001952843
-
Analysis of energetic amino acid metabolism in Acyrthosiphon pisum: A multidimensional approach to amino acid metabolism in aphids
-
Febvay, G., I. Liadouze, J. Guillaud, and G. Bonnot. 1995. Analysis of energetic amino acid metabolism in Acyrthosiphon pisum: a multidimensional approach to amino acid metabolism in aphids. Arch. Insect Biochem. Physiol. 29:45-69.
-
(1995)
Arch. Insect Biochem. Physiol.
, vol.29
, pp. 45-69
-
-
Febvay, G.1
Liadouze, I.2
Guillaud, J.3
Bonnot, G.4
-
14
-
-
0032711114
-
Fate of dietary sucrose and neosynthesis of amino acids in the pea aphid, Acyrthosiphon pisum, reared on different diets
-
Febvay, G., Y. Rahbe, M. Rynkiewicz, J. Guillaud, and G. Bonnot 1999. Fate of dietary sucrose and neosynthesis of amino acids in the pea aphid, Acyrthosiphon pisum, reared on different diets. J. Exp. Biol. 202:2639-2652.
-
(1999)
J. Exp. Biol.
, vol.202
, pp. 2639-2652
-
-
Febvay, G.1
Rahbe, Y.2
Rynkiewicz, M.3
Guillaud, J.4
Bonnot, G.5
-
15
-
-
0035047678
-
Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS
-
Hommais, F., E. Krin, C. Laurent-Winter, O. Soutourina, A. Malpertuy, J. P. Le Caer, A. Danchin, and P. Bertin. 2001. Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS. Mol. Microbiol. 40:20-36.
-
(2001)
Mol. Microbiol.
, vol.40
, pp. 20-36
-
-
Hommais, F.1
Krin, E.2
Laurent-Winter, C.3
Soutourina, O.4
Malpertuy, A.5
Le Caer, J.P.6
Danchin, A.7
Bertin, P.8
-
16
-
-
0036794733
-
Amino acid composition and nutritional quality of potato leaf phloem sap for aphids
-
Karley, A. J., A. E. Douglas, and W. E. Parker. 2002. Amino acid composition and nutritional quality of potato leaf phloem sap for aphids. J. Exp. Biol. 205:3009-3018.
-
(2002)
J. Exp. Biol.
, vol.205
, pp. 3009-3018
-
-
Karley, A.J.1
Douglas, A.E.2
Parker, W.E.3
-
17
-
-
4344716137
-
A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium
-
Kelly, A., M. D. Goldberg, R. K. Carroll, V. Danino, J. C. Hinton, and C. J. Dorman. 2004. A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium. Microbiology 150:2037-2053.
-
(2004)
Microbiology
, vol.150
, pp. 2037-2053
-
-
Kelly, A.1
Goldberg, M.D.2
Carroll, R.K.3
Danino, V.4
Hinton, J.C.5
Dorman, C.J.6
-
18
-
-
0029748909
-
Metabolic fate of energetic amino acids in the aposymbiotic pea aphid Acyrthosiphon pisum (Harris) (Homoptera: Aphididae)
-
Liadouze, I., G. Febvay, J. Guillaud, and G. Bonnot. 1996. Metabolic fate of energetic amino acids in the aposymbiotic pea aphid Acyrthosiphon pisum (Harris) (Homoptera: Aphididae). Symbiosis 21:115-127.
-
(1996)
Symbiosis
, vol.21
, pp. 115-127
-
-
Liadouze, I.1
Febvay, G.2
Guillaud, J.3
Bonnot, G.4
-
19
-
-
23644433830
-
Extracellular secretion of polypeptides using a modified Escherichia coli flagellar secretion apparatus
-
Majander, K., L. Anton, J. Antikainen, H. Lang, M. Brummer, T. K. Korhonen, and B. Westerlund-Wikstrom. 2005. Extracellular secretion of polypeptides using a modified Escherichia coli flagellar secretion apparatus. Nat. Biotechnol. 23:475-481.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 475-481
-
-
Majander, K.1
Anton, L.2
Antikainen, J.3
Lang, H.4
Brummer, M.5
Korhonen, T.K.6
Westerlund-Wikstrom, B.7
-
20
-
-
20444492834
-
Regulation of transcription in a reduced bacterial genome: Nutrient-provisioning genes of the obligate symbiont Buchnera aphidicola
-
Moran, N. A., H. E. Dunbar, and J. L. Wilcox. 2005. Regulation of transcription in a reduced bacterial genome: nutrient-provisioning genes of the obligate symbiont Buchnera aphidicola. J. Bacteriol. 187:4229-4237.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 4229-4237
-
-
Moran, N.A.1
Dunbar, H.E.2
Wilcox, J.L.3
-
21
-
-
0034877104
-
Regulation of aromatic amino acid biosynthesis in gamma-proteobacteria
-
Panina, E. M., A. G. Vitreschak, A. A. Mironov, and M. S. Gelfand. 2001. Regulation of aromatic amino acid biosynthesis in gamma-proteobacteria. J. Mol. Microbiol. Biotechnol. 3:529-543.
-
(2001)
J. Mol. Microbiol. Biotechnol.
, vol.3
, pp. 529-543
-
-
Panina, E.M.1
Vitreschak, A.G.2
Mironov, A.A.3
Gelfand, M.S.4
-
22
-
-
0037721512
-
Regulation of biosynthesis and transport of aromatic amino acids in low-GC Gram-positive bacteria
-
Panina, E. M., A. G. Vitreschak, A. A. Mironov, and M. S. Gelfand. 2003. Regulation of biosynthesis and transport of aromatic amino acids in low-GC Gram-positive bacteria. FEMS Microbiol. Lett. 222:211-220.
-
(2003)
FEMS Microbiol. Lett.
, vol.222
, pp. 211-220
-
-
Panina, E.M.1
Vitreschak, A.G.2
Mironov, A.A.3
Gelfand, M.S.4
-
23
-
-
33644872941
-
BuchneraBASE: A post-genomic resource for Buchnera sp. APS
-
Prickett, M. D., M. Page, A. E. Douglas, and G. H. Thomas. 2006. BuchneraBASE: a post-genomic resource for Buchnera sp. APS. Bioinformatics 22:641-642.
-
(2006)
Bioinformatics
, vol.22
, pp. 641-642
-
-
Prickett, M.D.1
Page, M.2
Douglas, A.E.3
Thomas, G.H.4
-
24
-
-
38249012676
-
A test of the hypotheses that nitrogen is upgraded and recycled in an aphid (Acyrthosiphon pisum) symbiosis
-
Prosser, W. A., and A. E. Douglas. 1992. A test of the hypotheses that nitrogen is upgraded and recycled in an aphid (Acyrthosiphon pisum) symbiosis. J. Insect Physiol. 38:93-99.
-
(1992)
J. Insect Physiol.
, vol.38
, pp. 93-99
-
-
Prosser, W.A.1
Douglas, A.E.2
-
25
-
-
1042304215
-
ROSO: Optimizing oligonucleotide probes for microarrays
-
Reymond, N., H. Charles, L. Duret, F. Calevro, G. Beslon, and J. M. Fayard. 2004. ROSO: optimizing oligonucleotide probes for microarrays. Bioinformatics 20:271-273.
-
(2004)
Bioinformatics
, vol.20
, pp. 271-273
-
-
Reymond, N.1
Charles, H.2
Duret, L.3
Calevro, F.4
Beslon, G.5
Fayard, J.M.6
-
26
-
-
0042667165
-
Essentiality, not expressiveness, drives gene-strand bias in bacteria
-
Rocha, E., and A. Danchin. 2003. Essentiality, not expressiveness, drives gene-strand bias in bacteria. Nat. Genet. 34:377-378.
-
(2003)
Nat. Genet.
, vol.34
, pp. 377-378
-
-
Rocha, E.1
Danchin, A.2
-
27
-
-
0034813236
-
Amino acid budgets in three aphid species using the same host plant
-
Sandstrom, J. P., and N. A. Moran. 2001. Amino acid budgets in three aphid species using the same host plant. Physiol. Entomol. 26:202-211.
-
(2001)
Physiol. Entomol.
, vol.26
, pp. 202-211
-
-
Sandstrom, J.P.1
Moran, N.A.2
-
28
-
-
0034618559
-
Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS
-
Shigenobu, S., H. Watanabe, M. Hattori, Y. Sasaki, and H. Ishikawa. 2000. Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS. Nature 407:81-86.
-
(2000)
Nature
, vol.407
, pp. 81-86
-
-
Shigenobu, S.1
Watanabe, H.2
Hattori, M.3
Sasaki, Y.4
Ishikawa, H.5
-
29
-
-
0037189373
-
50 Million years of genomic stasis in endosymbiotic bacteria
-
Tamas, I., L. Klasson, B. Canback, A. K. Naslund, A. S. Eriksson, J. J. Wernegreen, J. P. Sandstrom, N. A. Moran, and S. G. E. Andersson. 2002. 50 million years of genomic stasis in endosymbiotic bacteria. Science 296:2376-2379.
-
(2002)
Science
, vol.296
, pp. 2376-2379
-
-
Tamas, I.1
Klasson, L.2
Canback, B.3
Naslund, A.K.4
Eriksson, A.S.5
Wernegreen, J.J.6
Sandstrom, J.P.7
Moran, N.A.8
Andersson, S.G.E.9
-
30
-
-
0032693327
-
Functional genomics: Expression analysis of Escherichia coli growing on minimal and rich media
-
Tao, H., C. Bausch, C. Richmond, F. R. Blattner, and T. Conway. 1999. Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media. J. Bacteriol. 181:6425-6440.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 6425-6440
-
-
Tao, H.1
Bausch, C.2
Richmond, C.3
Blattner, F.R.4
Conway, T.5
-
31
-
-
0035875553
-
Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
-
Tseng, G. C., M. K. Oh, L. Rohlin, J. C. Liao, and W. H. Wong. 2001. Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Res. 29:2549-2557.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2549-2557
-
-
Tseng, G.C.1
Oh, M.K.2
Rohlin, L.3
Liao, J.C.4
Wong, W.H.5
-
32
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher, V. G., R. Tibshirani, and G. Chu. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA 98:5116-5121.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
33
-
-
0038575162
-
Consequences of reductive evolution for gene expression in an obligate endosymbiont
-
Wilcox, J. L., H. E. Dunbar, R. D. Wolfinger, and N. A. Moran. 2003. Consequences of reductive evolution for gene expression in an obligate endosymbiont. Mol. Microbiol. 48:1491-1500.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 1491-1500
-
-
Wilcox, J.L.1
Dunbar, H.E.2
Wolfinger, R.D.3
Moran, N.A.4
-
34
-
-
2342587350
-
Phloem amino acids and the host plant range of the polyphagous aphid, Aphis fabae
-
Wilkinson, T. L., and A. E. Douglas. 2003. Phloem amino acids and the host plant range of the polyphagous aphid, Aphis fabae. Entomol. Exp. Appl. 106:103-113.
-
(2003)
Entomol. Exp. Appl.
, vol.106
, pp. 103-113
-
-
Wilkinson, T.L.1
Douglas, A.E.2
-
35
-
-
33645461833
-
A dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola
-
Wilson, A. C., H. E. Dunbar, G. K. Davis, W. B. Hunter, D. L. Stern, and N. A. Moran. 2006. A dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola. BMC Genomics 7:50.
-
(2006)
BMC Genomics
, vol.7
, pp. 50
-
-
Wilson, A.C.1
Dunbar, H.E.2
Davis, G.K.3
Hunter, W.B.4
Stern, D.L.5
Moran, N.A.6
-
36
-
-
0242291496
-
MAANOVA: A software package for the analysis of spotted cDNA microarray experiments
-
G. Parmigiani, E. Garrett, R. Irizarry, and S. Zeger (ed.). Springer, New York, N.Y.
-
Wu, S., M. K. Kerr, X. Cui, and G. A. Churchill. 2003. MAANOVA: a software package for the analysis of spotted cDNA microarray experiments, p. 455. In G. Parmigiani, E. Garrett, R. Irizarry, and S. Zeger (ed.), The analysis of gene expression data: methods and software. Springer, New York, N.Y.
-
(2003)
The Analysis of Gene Expression Data: Methods and Software
, pp. 455
-
-
Wu, S.1
Kerr, M.K.2
Cui, X.3
Churchill, G.A.4
|