-
1
-
-
1642546383
-
Computation and analysis of protein circular dichroism spectra
-
Sreerama N, Woody RW: Computation and analysis of protein circular dichroism spectra. Meth Enzymol 2004, 383:318-351.
-
(2004)
Meth Enzymol
, vol.383
, pp. 318-351
-
-
Sreerama, N.1
Woody, R.W.2
-
2
-
-
3242877618
-
DICHROWEB, An online server for protein secondary structure analyses from circular dichroism spectroscopic data
-
Whitmore L, Wallace BA: DICHROWEB, An online server for protein secondary structure analyses from circular dichroism spectroscopic data. Nucleic Acids Res 2004, 32:668-673 [http://www.cryst.bbk.ac.uk/cdweb/ html/home.html].
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 668-673
-
-
Whitmore, L.1
Wallace, B.A.2
-
3
-
-
0023927904
-
Identification of structural motifs from protein coordinate data: Secondary structure and first-level supersecondary structure
-
Richards FM, Kundrot CE: Identification of structural motifs from protein coordinate data: secondary structure and first-level supersecondary structure. Proteins: Sruct Funct Genet 1988, 3:71-84.
-
(1988)
Proteins: Sruct Funct Genet
, vol.3
, pp. 71-84
-
-
Richards, F.M.1
Kundrot, C.E.2
-
4
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C: Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983, 22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
5
-
-
0029619259
-
Knowledge-based protein secondary structure assignment
-
Frishman D, Argos P: Knowledge-based protein secondary structure assignment. Proteins: Struct Funct Genet 1995, 23:566-579.
-
(1995)
Proteins: Struct Funct Genet
, vol.23
, pp. 566-579
-
-
Frishman, D.1
Argos, P.2
-
6
-
-
0033562619
-
Assigning secondary structure from protein coordinate data
-
King SM, Johnson WC Jr: Assigning secondary structure from protein coordinate data. Prot Struct Func Gen 1999, 35:313-320.
-
(1999)
Prot Struct Func Gen
, vol.35
, pp. 313-320
-
-
King, S.M.1
Johnson Jr., W.C.2
-
7
-
-
28444482398
-
Bioinformatics analyses of circular dichroism protein reference databases
-
Janes RW: Bioinformatics analyses of circular dichroism protein reference databases. Bioinformatics 2005, 21:4230-4239.
-
(2005)
Bioinformatics
, vol.21
, pp. 4230-4239
-
-
Janes, R.W.1
-
8
-
-
0034345294
-
Synchrotron radiation circular dichroism spectroscopy as a tool for investigating protein structures
-
Wallace BA: Synchrotron radiation circular dichroism spectroscopy as a tool for investigating protein structures. J Synch Rod 2000, 7:289-295.
-
(2000)
J Synch Rod
, vol.7
, pp. 289-295
-
-
Wallace, B.A.1
-
9
-
-
33747855587
-
A reference database for circular dichroism spectroscopy covering fold and secondary structure space
-
Lees JG, Miles AJ, Wien F, Wallace BA: A reference database for circular dichroism spectroscopy covering fold and secondary structure space. Bioinformatics 2006, 22:1955-1962.
-
(2006)
Bioinformatics
, vol.22
, pp. 1955-1962
-
-
Lees, J.G.1
Miles, A.J.2
Wien, F.3
Wallace, B.A.4
-
10
-
-
0035478472
-
Synchrotron radiation circular dichroism spectroscopy of proteins: Secondary structure, fold recognition and structural genomics
-
Wallace BA, Janes RW: Synchrotron radiation circular dichroism spectroscopy of proteins: Secondary structure, fold recognition and structural genomics. Curr Opin Chem Biol 2001, 5:567-571.
-
(2001)
Curr Opin Chem Biol
, vol.5
, pp. 567-571
-
-
Wallace, B.A.1
Janes, R.W.2
-
11
-
-
33644873189
-
Synchrotron radiation circular dichroism spectroscopy of proteins and applications in structural and functional genomics
-
Miles AJ, Wallace BA: Synchrotron radiation circular dichroism spectroscopy of proteins and applications in structural and functional genomics. Chem Soc Rev 2006, 35:39-51.
-
(2006)
Chem Soc Rev
, vol.35
, pp. 39-51
-
-
Miles, A.J.1
Wallace, B.A.2
-
12
-
-
3242742115
-
The optimization of protein secondary structure determination with infrared and circular dichroism spectra
-
Oberg KA, Ruysschaert JM, Goormaghtigh E: The optimization of protein secondary structure determination with infrared and circular dichroism spectra. Eur J Biochem 2004, 271:2937-2948.
-
(2004)
Eur J Biochem
, vol.271
, pp. 2937-2948
-
-
Oberg, K.A.1
Ruysschaert, J.M.2
Goormaghtigh, E.3
-
13
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The Protein Data Bank. Nucleic Acid Res 2000, 28:235-242.
-
(2000)
Nucleic Acid Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
14
-
-
0033042935
-
Estimation of the number of alpha-helical and beta-strand segments in proteins using circular dichroism spectroscopy
-
Sreerama N, Venyaminov SY, Woody RW: Estimation of the number of alpha-helical and beta-strand segments in proteins using circular dichroism spectroscopy. Protein Sci 1999, 8:370-380.
-
(1999)
Protein Sci
, vol.8
, pp. 370-380
-
-
Sreerama, N.1
Venyaminov, S.Y.2
Woody, R.W.3
-
15
-
-
0019871893
-
Information content in the circular dichroism of proteins
-
Hennessey JP Jr, Johnson WC Jr: Information content in the circular dichroism of proteins, Biochemistry 1981, 20:1085-1094.
-
(1981)
Biochemistry
, vol.20
, pp. 1085-1094
-
-
Hennessey Jr, J.P.1
Johnson Jr., W.C.2
-
16
-
-
0027474991
-
Left-handed polyproline II helices commonly occur in globular proteins
-
Adzhubei AA, Sternberg MJ: Left-handed polyproline II helices commonly occur in globular proteins. J Mol Biol 1993, 229:472-493.
-
(1993)
J Mol Biol
, vol.229
, pp. 472-493
-
-
Adzhubei, A.A.1
Sternberg, M.J.2
-
17
-
-
12844253803
-
Calibration and standardisation of synchrotron radiation circular dichroism and conventional circular dichroism spectrophotometers part 2: Factors affecting wavelength and ellipticity measurements
-
Miles AJ, Wien F, Lees JG, Wallace BA: Calibration and standardisation of synchrotron radiation circular dichroism and conventional circular dichroism spectrophotometers part 2: Factors affecting wavelength and ellipticity measurements. Spectroscopy 2005, 19:43-51 [http://iospress.metapress.cohn4rxefuecail55vlqlii45)/app/home/ contribution.asp?referrer=parent&backto=issue.3.13:journal.13.28: linkongpublicationresults,1:103186.1].
-
(2005)
Spectroscopy
, vol.19
, pp. 43-51
-
-
Miles, A.J.1
Wien, F.2
Lees, J.G.3
Wallace, B.A.4
-
18
-
-
13244255213
-
Spectral magnitude effects on the analyses of secondary structure from circular dichroism spectroscopic data
-
Miles AJ, Whitmore L, Wallace BA: Spectral magnitude effects on the analyses of secondary structure from circular dichroism spectroscopic data. Protein Sci 2005, 14:368-374.
-
(2005)
Protein Sci
, vol.14
, pp. 368-374
-
-
Miles, A.J.1
Whitmore, L.2
Wallace, B.A.3
-
19
-
-
23144465987
-
SCRATCH: A protein structure and structural feature prediction server
-
Cheng J, Randall A, Sweredoski M, Baldi P: SCRATCH: A protein structure and structural feature prediction server. Nucleic Acids Res 2005, 33:72-76.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 72-76
-
-
Cheng, J.1
Randall, A.2
Sweredoski, M.3
Baldi, P.4
-
21
-
-
0027932724
-
Poly(Pro)II type structure in globular proteins - Identification and CD analysis
-
Sreerama N, Woody RW: Poly(Pro)II type structure in globular proteins - Identification and CD analysis. Biochemistry 1994, 33:10022-10025.
-
(1994)
Biochemistry
, vol.33
, pp. 10022-10025
-
-
Sreerama, N.1
Woody, R.W.2
-
22
-
-
0030039296
-
PROMOTIF - A program to identify and analyze structural motif in proteins
-
Hutchinson EG, Thornton JM: PROMOTIF - a program to identify and analyze structural motif in proteins. Protein Sci 1996, 5:212-20.
-
(1996)
Protein Sci
, vol.5
, pp. 212-220
-
-
Hutchinson, E.G.1
Thornton, J.M.2
-
23
-
-
0034672325
-
Estimation of protein secondary structure from circular dichroism spectra: Comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set
-
Sreerama N, Woody RW: Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set. Anal Biochem 2000, 287:252-260.
-
(2000)
Anal Biochem
, vol.287
, pp. 252-260
-
-
Sreerama, N.1
Woody, R.W.2
-
24
-
-
0027447099
-
A self-consistent method for the analysis of protein secondary structure from circular-dichroism
-
Sreerama N, Woody RW: A self-consistent method for the analysis of protein secondary structure from circular-dichroism. Anal Biochem 1993, 209:32-44.
-
(1993)
Anal Biochem
, vol.209
, pp. 32-44
-
-
Sreerama, N.1
Woody, R.W.2
-
26
-
-
33845251782
-
-
MATLAB MathWorks
-
MATLAB MathWorks. 2005.
-
(2005)
-
-
-
27
-
-
0026530383
-
Quantitative analysis of protein far UV circular dichroism spectra by neural networks
-
Bohm G, Muhr R, Jaenicke R: Quantitative analysis of protein far UV circular dichroism spectra by neural networks. Protein Eng 1992, 5:191-195.
-
(1992)
Protein Eng
, vol.5
, pp. 191-195
-
-
Bohm, G.1
Muhr, R.2
Jaenicke, R.3
-
28
-
-
0003710380
-
LIBSVM: A library for support vector machines
-
Chang CC, Lin CJ: LIBSVM: a library for support vector machines. [http://www.csie.ntu.edu.tw/~cjlin/libsym].
-
-
-
Chang, C.C.1
Lin, C.J.2
-
29
-
-
0028593509
-
Protein superfamilies and domain superfolds
-
Orengo CA, Jones DT, Thornton JM: Protein superfamilies and domain superfolds. Nature 1994, 372:631-634.
-
(1994)
Nature
, vol.372
, pp. 631-634
-
-
Orengo, C.A.1
Jones, D.T.2
Thornton, J.M.3
-
30
-
-
30344485698
-
The protein circular dichroism data bank (PCDDB): A bioinformatics and spectroscopic resource
-
Wallace BA, Whitmore L, Janes RW: The protein circular dichroism data bank (PCDDB): A bioinformatics and spectroscopic resource. Proteins: Struct Funct Bioinf 2006, 62:1-3 [http://pcddb.cryst.bbc.uk].
-
(2006)
Proteins: Struct Funct Bioinf
, vol.62
, pp. 1-3
-
-
Wallace, B.A.1
Whitmore, L.2
Janes, R.W.3
|