-
1
-
-
0025183708
-
Basic Local Alignment Search Tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E.W. and Lipman, D. J. (1990). Basic Local Alignment Search Tool. J. Mol. Biol. 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0033034745
-
Automated genome sequence analysis and annotation
-
Andrade, M. A., Brown, N. P., Leroy, C., Hoersch, S., de Daruvar, A., Reich, C., Franchini, A., Tamames, J., Valencia, A., Ouzounis, C. and Sander, C. (1999). Automated genome sequence analysis and annotation. Bioinformatics 15, 391-412.
-
(1999)
Bioinformatics
, vol.15
, pp. 391-412
-
-
Andrade, M.A.1
Brown, N.P.2
Leroy, C.3
Hoersch, S.4
de Daruvar, A.5
Reich, C.6
Franchini, A.7
Tamames, J.8
Valencia, A.9
Ouzounis, C.10
Sander, C.11
-
3
-
-
0345865009
-
GenBank: Update
-
Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J. and Wheeler, D. L. (2004). GenBank: Update. Nucleic Acids Res. 32, D23-D26.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
4
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
Boeckmann, B., Bairoch, A., Apweiler, R., Blatter, M. C., Estreicher, A., Gasteiger, E., Martin, M. J., Michoud, K., O'Donovan, C., Phan, I., Pilbout, S. and Schneider, M. (2003). The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 31, 365-370.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
Pilbout, S.11
Schneider, M.12
-
5
-
-
0242418246
-
Phylogenetic shadowing of primate sequences to find functional regions of the human of the human genome
-
Boffelli, D., McAuliffe, J., Ovcharenko, D., Lewis, K. D., Ovchrarenko, L., Patchter, L. and Rubin, E. M. (2003). Phylogenetic shadowing of primate sequences to find functional regions of the human of the human genome. Science 299, 1391-1394.
-
(2003)
Science
, vol.299
, pp. 1391-1394
-
-
Boffelli, D.1
McAuliffe, J.2
Ovcharenko, D.3
Lewis, K.D.4
Ovchrarenko, L.5
Patchter, L.6
Rubin, E.M.7
-
6
-
-
10944230834
-
Intraspecies sequence comparison for annotating genomes
-
Boffelli, D., Weer, C. V., Weng, L., Lewis, K. D., Shoukry, M. I., Pachter, L., Keys, D. N. and Rubin, E. M. (2004). Intraspecies sequence comparison for annotating genomes. Genome Res. 14, 2406-2411.
-
(2004)
Genome Res.
, vol.14
, pp. 2406-2411
-
-
Boffelli, D.1
Weer, C.V.2
Weng, L.3
Lewis, K.D.4
Shoukry, M.I.5
Pachter, L.6
Keys, D.N.7
Rubin, E.M.8
-
7
-
-
0030271920
-
Go hunting in sequence databases but watch out for the traps
-
Bork, P. and Bairoch, A. (1996). Go hunting in sequence databases but watch out for the traps. Trends Genet. 12, 425-427.
-
(1996)
Trends Genet.
, vol.12
, pp. 425-427
-
-
Bork, P.1
Bairoch, A.2
-
8
-
-
0032509302
-
Genome Sequence of the nematode C. elegans: A platform for investigating biology
-
The C. elegans Sequencing Consortium
-
The C. elegans Sequencing Consortium. (1998). Genome Sequence of the nematode C. elegans: A platform for investigating biology. Science 282, 2012-2018.
-
(1998)
Science
, vol.282
, pp. 2012-2018
-
-
-
9
-
-
0033668724
-
The Drosophila genome
-
Celniker, S. E. (2000). The Drosophila genome. Curr. Opin. Gen. Dev. 10, 612-616.
-
(2000)
Curr. Opin. Gen. Dev.
, vol.10
, pp. 612-616
-
-
Celniker, S.E.1
-
10
-
-
2042437650
-
International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome
-
Landers, E. S., et al.; International Human Genome Sequencing Consortium. (2001). Initial sequencing and analysis of the human genome. Nature 409, 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Landers, E.S.1
-
11
-
-
0028931899
-
Identification of new Schistosoma mansoni genes by the EST strategy using a directional cDNA library
-
Franco, G. R., Adams, M. D., Soares, M. B., Simpson, A. J., Venter, J. C. and Pena, S. D. (1995). Identification of new Schistosoma mansoni genes by the EST strategy using a directional cDNA library. Gene 152, 141-147.
-
(1995)
Gene
, vol.152
, pp. 141-147
-
-
Franco, G.R.1
Adams, M.D.2
Soares, M.B.3
Simpson, A.J.4
Venter, J.C.5
Pena, S.D.6
-
12
-
-
0034103067
-
The Schistosoma gene discovery program: State of the art
-
Franco, G. R., Valadao, A. F., Azevedo, V. and Rabelo, E. M. L. (2000). The Schistosoma gene discovery program: State of the art. Int. J. Parasit. 30, 453-463.
-
(2000)
Int. J. Parasit.
, vol.30
, pp. 453-463
-
-
Franco, G.R.1
Valadao, A.F.2
Azevedo, V.3
Rabelo, E.M.L.4
-
13
-
-
0034350372
-
Early evolution of the bilateria
-
Hausdorf, B. (2000). Early evolution of the bilateria. Syst. Biol. 49, 130-142.
-
(2000)
Syst. Biol.
, vol.49
, pp. 130-142
-
-
Hausdorf, B.1
-
14
-
-
3342988241
-
Bioinformatics in reproductive biology - Functional annotation based in comparative sequence analysis
-
Hsu, S. Y. T. (2004). Bioinformatics in reproductive biology - functional annotation based in comparative sequence analysis. J. Reprod. Immunol. 63, 75-83.
-
(2004)
J. Reprod. Immunol.
, vol.63
, pp. 75-83
-
-
Hsu, S.Y.T.1
-
15
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Kanehisa, M., Goto, S., Kawashima, S., Okuno, Y. and Hattori, M. (2004). The KEGG resource for deciphering the genome. Nucleic Acids Res. 32, D277-D280.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
17
-
-
0002636459
-
Annotation of the Drosophila melanogaster euchromatic genome: A systematic review
-
RESEARCH0083
-
Misra, S., et al. (2002). Annotation of the Drosophila melanogaster euchromatic genome: A systematic review. Genome Biol. 3, RESEARCH0083.
-
(2002)
Genome Biol.
, vol.3
-
-
Misra, S.1
-
18
-
-
26444562986
-
Tests of automatic annotation using KOG proteins and ESTs from 4 eukariotic organisms
-
Mudado, M. A., Bravo-Neto, E. and Ortega, J. M. (2005). Tests of automatic annotation using KOG proteins and ESTs from 4 eukariotic organisms. Lecture Notes in Computer Sciences 3594, 141-152.
-
(2005)
Lecture Notes in Computer Sciences
, vol.3594
, pp. 141-152
-
-
Mudado, M.A.1
Bravo-Neto, E.2
Ortega, J.M.3
-
19
-
-
0034572821
-
Towards understanding the first genome sequence of a crenarcheon by genome annotation using clusters of orthologous groups of proteins (COGs)
-
RESEARCH0009
-
Natale, D. A., Shankavaram, U. T., Galperin, M. Y., Wolf, Y. I., Aravind, L. and Koonin, E. V. (2000). Towards understanding the first genome sequence of a crenarcheon by genome annotation using clusters of orthologous groups of proteins (COGs). Genome Biol. 1, RESEARCH0009.
-
(2000)
Genome Biol.
, vol.1
-
-
Natale, D.A.1
Shankavaram, U.T.2
Galperin, M.Y.3
Wolf, Y.I.4
Aravind, L.5
Koonin, E.V.6
-
20
-
-
0036175276
-
The past, present and future of genome-wide re-annotation
-
COMMENT2001
-
Ouzounis, C. A. and Karp, P. D. (2002). The past, present and future of genome-wide re-annotation. Genome Biol. 3, COMMENT2001.
-
(2002)
Genome Biol.
, vol.3
-
-
Ouzounis, C.A.1
Karp, P.D.2
-
21
-
-
0033167908
-
Nucleotide sequence databases: A gold mine for biologists
-
Pandey, A. and Lewitter, F. (1999). Nucleotide sequence databases: A gold mine for biologists. Trends Biochem Sci. 24, 276-280.
-
(1999)
Trends Biochem Sci.
, vol.24
, pp. 276-280
-
-
Pandey, A.1
Lewitter, F.2
-
22
-
-
0036369227
-
Clustering of Schistosoma mansoni mRNA sequences and analysis of the most transcribed genes: Implications in metabolism and biology of different developmental stages
-
Prosdocimi, F., Faria-Campos, A. C., Peixoto, F., Ortega, J. M. and Franco, G. R. (2002). Clustering of Schistosoma mansoni mRNA sequences and analysis of the most transcribed genes: Implications in metabolism and biology of different developmental stages. Mem. Inst. Oswaldo Cruz 97, 61-69.
-
(2002)
Mem. Inst. Oswaldo Cruz
, vol.97
, pp. 61-69
-
-
Prosdocimi, F.1
Faria-Campos, A.C.2
Peixoto, F.3
Ortega, J.M.4
Franco, G.R.5
-
23
-
-
0032857548
-
Analysis of the gene expression profile of Schistosoma mansoni cercariae using the expressed sequence tag approach
-
Santos, T. M., Johnston, D. A., Azevedo, V., Ridgers, I. L., Martinez, M. F., Marotta, G. B., Santos, R. L., Fonseca, S. J., Ortega, J. M., Rabelo, E. M., Saber, M., Ahmed, H. M., Romeih, M. H., Franco, G. R., Rollinson, D. and Pena, S. D. (1999). Analysis of the gene expression profile of Schistosoma mansoni cercariae using the expressed sequence tag approach. Mol. Biochem. Parasitol. 103, 79-97.
-
(1999)
Mol. Biochem. Parasitol.
, vol.103
, pp. 79-97
-
-
Santos, T.M.1
Johnston, D.A.2
Azevedo, V.3
Ridgers, I.L.4
Martinez, M.F.5
Marotta, G.B.6
Santos, R.L.7
Fonseca, S.J.8
Ortega, J.M.9
Rabelo, E.M.10
Saber, M.11
Ahmed, H.M.12
Romeih, M.H.13
Franco, G.R.14
Rollinson, D.15
Pena, S.D.16
-
24
-
-
0035408587
-
Genome annotation: From sequence to biology
-
Stein, L. (2001). Genome annotation: From sequence to biology. Nat. Gen. 2, 493-503.
-
(2001)
Nat. Gen.
, vol.2
, pp. 493-503
-
-
Stein, L.1
-
25
-
-
0033956060
-
The COG database: A tool for genome-scale analysis of protein functions and evolution
-
Tatusov, R. L., Galperin, M. Y., Natale, D. A. and Koonin, E. V. (2000). The COG database: A tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28, 33-36.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
26
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov, R. L., Natale, D. A., Garkavtsev, I. V., Tatusova, T. A., Shankavaram, U. T., Rao, B. S., Kiryutin, B., Galperin, M. Y., Fedorova, N. D. and Koonin, E. V. (2001). The COG database: New developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 29, 22-28.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
27
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov, R. L., Fedorova, N. D., Jackson, J. D., Jacobs, A. R., Kiryutin, B., Koonin, EV., Krylov, D. M., Mazumder, R., Mekhedov, S. L., Nikolskaya, A. N., Rao, B. S., Smirnov, S., Sverdlov, A. V., Vasudevan, S., Wolf, Y. I., Yin, J. J. and Natale, D. A (2003). The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4, 41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
Rao, B.S.11
Smirnov, S.12
Sverdlov, A.V.13
Vasudevan, S.14
Wolf, Y.I.15
Yin, J.J.16
Natale, D.A.17
-
28
-
-
0035895505
-
The sequence of the human genome
-
Venter, J. C., et al. (2001). The sequence of the human genome. Science 291, 1304-1352.
-
(2001)
Science
, vol.291
, pp. 1304-1352
-
-
Venter, J.C.1
-
29
-
-
0141507054
-
Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni
-
Verjovski-Almeida, S., et al. (2003). Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni. Nat. Genet. 35, 148-157.
-
(2003)
Nat. Genet.
, vol.35
, pp. 148-157
-
-
Verjovski-Almeida, S.1
-
30
-
-
2942582546
-
Schistosome transcriptome: Insights and perspectives for functional genomics
-
Verjovski-Almeida, S., Leite, L. C. C., Dias-Neto, E., Menck, C. F. M. and Wilson, R. A. (2004). Schistosome transcriptome: Insights and perspectives for functional genomics. Trends Parasitol. 20, 304-308.
-
(2004)
Trends Parasitol.
, vol.20
, pp. 304-308
-
-
Verjovski-Almeida, S.1
Leite, L.C.C.2
Dias-Neto, E.3
Menck, C.F.M.4
Wilson, R.A.5
-
31
-
-
0037252705
-
Database resources of the National Center for Biotechnology
-
Wheeler, D. L., Church, D. M., Federhen, S., Lash, A. E., Madden, T. L., Pontius, J. U., Schuler, G. D., Schriml, L. M., Sequeira, E., Tatusova, T. A. and Wagner, L. (2003). Database resources of the National Center for Biotechnology. Nucleic Acids Res. 31, 28-33.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 28-33
-
-
Wheeler, D.L.1
Church, D.M.2
Federhen, S.3
Lash, A.E.4
Madden, T.L.5
Pontius, J.U.6
Schuler, G.D.7
Schriml, L.M.8
Sequeira, E.9
Tatusova, T.A.10
Wagner, L.11
|