Probing the role of local propensity in peptide turn formation

International Journal of Quantum Chemistry

Volumn 80, Issue 4-5, 2000, Pages 1125-1128

  Mohanty, D ^a   Elber, R ^b   Thirumalai, D ^c  

^a HEBREW UNIVERSITY OF JERUSALEM   (Israel)

^b Department of Computer Science and School of Operations Research and Information Engineering   (United States)

^c Bldg 142   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEINS; SOLVENTS; WATER;

LOCAL PROPENSITY; PEPTIDES;

NITROGEN COMPOUNDS;

EID: 0034324530     PISSN: 00207608     EISSN: None     Source Type: Journal    
DOI: 10.1002/1097-461X(2000)80:4/5<1125::AID-QUA62>3.0.CO;2-J     Document Type: Article

References (23)

1. Dill, K. A.; Chan, H. S. Nat Struct Biol 1997, 4, 10-19.
2. Bryngelson, J. D.; Onuchic, J. N.; Socci, N. D.; Wolynes, P. G. Proteins 1995, 21, 167-195.
3. Fersht, A. R. Curr Opin Struct Biol 1997, 7, 3-9.
4. Thirumalai, D.; Klimov, D. K. Curr Opin Struct Biol 1999, 9, 197-207.
5. Duan, Y.; Kollman, P. A. Science 1998, 282, 740-744.
6. Mohanty, D.; Elber, R.; Thirumalai, D.; Beglov, D.; Roux, B. J Mol Biol 1997, 272, 423-442.
7. Yao, J.; Fehrer, V. B.; Espejo, B. F.; Reymond, M. T.; Wright, P. E.; Dyson, H. J. J Mol Biol 1994, 243, 736-753.
8. Yao, J.; Dyson, H. J.; Wright, P. E. J Mol Biol 1995, 243, 754-766.
9. Munoz, V.; Thompson, P. A.; Hofrichter, J.; Eaton, W. A. Nature 1995, 390, 196-199.
10. Bonvin, A. M. J. J.; van Gunsteren, W. F. J Mol Biol 2000, 296, 255-268.
11. Ma, B.; Nussinov, R. J Mol Biol 2000, 296, 1091-1104.
12. Daggett, V.; Levitt, M. J Mol Biol 1992, 223, 1121-1138.
13. Pande, V. S.; Rokhsar, D. S. Proc Natl Acad Sci 1999, 96, 9062-9067.
14. Guo, Z.; Thirumalai, D. Biopolymers 1995, 35, 137-140.
15. Shakhnovich, E. S.; Abkevich, V. A.; Ptitsyn, O. Nature 1996, 379, 96-98.
16. Elber, R.; Roitberg, A.; Simmerling, C.; Goldstein, R.; Li, H.; Verkhiveker, G.; Kaeser, C.; Zhang, J.; Utilsky, A. Comp Phys Commun 1995, 91, 159-189.
17. Roitberg, A.; Elber, R. J Chem Phys 1991, 95, 9277-9287.
18. Beglov, D.; Roux, B. J Chem Phys 1994, 100, 9050-9063.
19. Bryngelson, J. D.; Wolynes, P. G. J Phys Chem 1989, 93, 6902-6915.
20. Honeycutt, J. D.; Thirumalai, D. Proc Natl Acad Sci 1990, 87, 3526-3529.
21. Zwanzig, R.; Szabo, A.; Bagchi, B. Proc Natl Acad Sci 1992, 89, 20-22.
22. Thirumalai, D. J Phys I 1995, 5, 1457-1467.
23. Klimov, D. K.; Thirumalai, D. Phys Rev Lett 1997, 79, 317-320.