-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990;215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0024557590
-
Stochastic models for heterogeneous DNA sequences
-
Churchill GA. Stochastic models for heterogeneous DNA sequences. Bull Math Biol 1989;51:79-94.
-
(1989)
Bull Math Biol
, vol.51
, pp. 79-94
-
-
Churchill, G.A.1
-
3
-
-
0029174347
-
Multiple alignment using hidden Markov models
-
Eddy SR. Multiple alignment using hidden Markov models. Proc Int Conf Intell Syst Mol Biol 1995;3:114-120.
-
(1995)
Proc Int Conf Intell Syst Mol Biol
, vol.3
, pp. 114-120
-
-
Eddy, S.R.1
-
4
-
-
0032568655
-
SMART, a simple modular architecture research tool: Identification of signaling domains
-
Schultz J, Milpetz F, Bork P, Ponting CP. SMART, a simple modular architecture research tool: identification of signaling domains, Proc Natl Acad Sci USA 1998;95:5857-5864.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5857-5864
-
-
Schultz, J.1
Milpetz, F.2
Bork, P.3
Ponting, C.P.4
-
5
-
-
9144257886
-
The Pfam protein families database
-
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR. The Pfam protein families database. Nucleic Acids Res 2004;32:D138-D141.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
Sonnhammer, E.L.10
Studholme, D.J.11
Yeats, C.12
Eddy, S.R.13
-
6
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
7
-
-
0035878724
-
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
-
Schaffer AA, Aravind L, Madden TL, Shavirin S, Spouge JL, Wolf YI, Koonin EV, Altschul SF. Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res 2001;29:2994-3005.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2994-3005
-
-
Schaffer, A.A.1
Aravind, L.2
Madden, T.L.3
Shavirin, S.4
Spouge, J.L.5
Wolf, Y.I.6
Koonin, E.V.7
Altschul, S.F.8
-
8
-
-
0032577975
-
Claudin-1 and -2: Novel integral membrane proteins localizing at tight junctions with no sequence similarity to occludin
-
Furuse M, Fujita K, Hiiragi T, Fujimoto K, Tsukita S. Claudin-1 and -2: novel integral membrane proteins localizing at tight junctions with no sequence similarity to occludin. J Cell Biol 1998;141:1539-1550.
-
(1998)
J Cell Biol
, vol.141
, pp. 1539-1550
-
-
Furuse, M.1
Fujita, K.2
Hiiragi, T.3
Fujimoto, K.4
Tsukita, S.5
-
10
-
-
0033582334
-
Claudin multigene family encoding four-transmembrane domain protein components of tight junction strands
-
Morita K, Furuse M, Fujimoto K, Tsukita S. Claudin multigene family encoding four-transmembrane domain protein components of tight junction strands. Proc Natl Acad Sci USA 1999;96:511-516.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 511-516
-
-
Morita, K.1
Furuse, M.2
Fujimoto, K.3
Tsukita, S.4
-
11
-
-
0028793694
-
Epithelial membrane protein-1, peripheral myelin protein 22, and lens membrane protein 20 define a novel gene family
-
Taylor V, Welcher AA, Program AE, Suter U. Epithelial membrane protein-1, peripheral myelin protein 22, and lens membrane protein 20 define a novel gene family. J Biol Chem 1995;270:28824-28833.
-
(1995)
J Biol Chem
, vol.270
, pp. 28824-28833
-
-
Taylor, V.1
Welcher, A.A.2
Program, A.E.3
Suter, U.4
-
12
-
-
0028841888
-
Identification and characterization of a novel squamous cell-associated gene related to PMP22
-
Marvin KW, Fujimoto W, Jetten AM. Identification and characterization of a novel squamous cell-associated gene related to PMP22. J Biol Chem 1995;270:28910-28916.
-
(1995)
J Biol Chem
, vol.270
, pp. 28910-28916
-
-
Marvin, K.W.1
Fujimoto, W.2
Jetten, A.M.3
-
13
-
-
0030461764
-
Characterization of a tumor-associated gene, a member of a novel family of genes encoding membrane glycoproteins
-
Ben Porath I, Benvenisty N. Characterization of a tumor-associated gene, a member of a novel family of genes encoding membrane glycoproteins. Gene 1996;183:69-75.
-
(1996)
Gene
, vol.183
, pp. 69-75
-
-
Ben Porath, I.1
Benvenisty, N.2
-
14
-
-
0033967692
-
Introducing RefSeq and LocusLink: Curated human genome resources at the NCBI
-
Pruitt KD, Katz KS, Sicotte H, Maglott DR. Introducing RefSeq and LocusLink: curated human genome resources at the NCBI. Trends Genet 2000;16:44-47.
-
(2000)
Trends Genet
, vol.16
, pp. 44-47
-
-
Pruitt, K.D.1
Katz, K.S.2
Sicotte, H.3
Maglott, D.R.4
-
15
-
-
33646423566
-
Expression of multiple epigenetically regulated cancer/germline genes in nonsmall cell lung cancer
-
Grunwald C, Koslowski M, Arsiray T, Dhaene K, Praet M, Victor A, Morresi-Hauf A, Lindner M, Passlick B, Lehr HA, Schafer SC, Seitz G, Huber C, Sahin U, Tureci O. Expression of multiple epigenetically regulated cancer/germline genes in nonsmall cell lung cancer. Int J Cancer 2006;118:2522-2528.
-
(2006)
Int J Cancer
, vol.118
, pp. 2522-2528
-
-
Grunwald, C.1
Koslowski, M.2
Arsiray, T.3
Dhaene, K.4
Praet, M.5
Victor, A.6
Morresi-Hauf, A.7
Lindner, M.8
Passlick, B.9
Lehr, H.A.10
Schafer, S.C.11
Seitz, G.12
Huber, C.13
Sahin, U.14
Tureci, O.15
-
17
-
-
0000207681
-
TMbase - A database of membrane spanning proteins segments
-
Hofmann K, Stoffel W. TMbase - a database of membrane spanning proteins segments. Biol Chem Hoppe Seyler 1993;374:166-170.
-
(1993)
Biol Chem Hoppe Seyler
, vol.374
, pp. 166-170
-
-
Hofmann, K.1
Stoffel, W.2
-
18
-
-
0029965553
-
A pancreatic cancer-specific expression profile
-
Gress TM, Muller-Pillasch F, Geng M, Zimmerhacld F, Zehetner G, Friess H, Buchler M, Adler G, Lehrach H. A pancreatic cancer-specific expression profile. Oncogene 1996;13:1819-1830.
-
(1996)
Oncogene
, vol.13
, pp. 1819-1830
-
-
Gress, T.M.1
Muller-Pillasch, F.2
Geng, M.3
Zimmerhacld, F.4
Zehetner, G.5
Friess, H.6
Buchler, M.7
Adler, G.8
Lehrach, H.9
-
19
-
-
0842346045
-
CLDN23 gene, frequently down-regulated in intestinal-type gastric cancer, is a novel member of CLAUDIN gene family
-
Katoh M, Katoh M. CLDN23 gene, frequently down-regulated in intestinal-type gastric cancer, is a novel member of CLAUDIN gene family. Int J Mol Med 2003;11:683-689.
-
(2003)
Int J Mol Med
, vol.11
, pp. 683-689
-
-
Katoh, M.1
Katoh, M.2
-
20
-
-
3042842762
-
A novel four transmembrane spanning protein, CLP24. A hypoxically regulated cell junction protein
-
Kearsey J, Petit S, De Oliveira C, Schweighoffer F. A novel four transmembrane spanning protein, CLP24. A hypoxically regulated cell junction protein. Eur J Biochem 2004;271:2584-2592.
-
(2004)
Eur J Biochem
, vol.271
, pp. 2584-2592
-
-
Kearsey, J.1
Petit, S.2
De Oliveira, C.3
Schweighoffer, F.4
-
21
-
-
9344244100
-
Molecular mechanisms of brain tumor edema
-
Papadopoulos MC, Saadoun S, Binder DK, Manley GT, Krishna S, Verkman AS. Molecular mechanisms of brain tumor edema. Neuroscience 2004;129:1011-1020.
-
(2004)
Neuroscience
, vol.129
, pp. 1011-1020
-
-
Papadopoulos, M.C.1
Saadoun, S.2
Binder, D.K.3
Manley, G.T.4
Krishna, S.5
Verkman, A.S.6
-
23
-
-
4043131714
-
Immunolocalization of tight junction proteins in the adult and developing human brain
-
Virgintino D, Errede M, Robertson D, Capobianco C, Girolamo F, Vimercati A, Bertossi M, Roncali L. Immunolocalization of tight junction proteins in the adult and developing human brain. Histochem Cell Biol 2004;122:51-59.
-
(2004)
Histochem Cell Biol
, vol.122
, pp. 51-59
-
-
Virgintino, D.1
Errede, M.2
Robertson, D.3
Capobianco, C.4
Girolamo, F.5
Vimercati, A.6
Bertossi, M.7
Roncali, L.8
-
24
-
-
13444262384
-
CDD: A Conserved Domain Database for protein classification
-
Marchler-Bauer A, Anderson JB, Cherukuri PF, DeWeese-Scott C, Geer LY, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Marchler GH, Mullokandov M, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Yamashita RA, Yin JJ, Zhang D, Bryant SH. CDD: a Conserved Domain Database for protein classification. Nucleic Acids Res 2005;33:D192-D196.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Cherukuri, P.F.3
DeWeese-Scott, C.4
Geer, L.Y.5
Gwadz, M.6
He, S.7
Hurwitz, D.I.8
Jackson, J.D.9
Ke, Z.10
Lanczycki, C.J.11
Liebert, C.A.12
Liu, C.13
Lu, F.14
Marchler, G.H.15
Mullokandov, M.16
Shoemaker, B.A.17
Simonyan, V.18
Song, J.S.19
Thiessen, P.A.20
Yamashita, R.A.21
Yin, J.J.22
Zhang, D.23
Bryant, S.H.24
more..
-
25
-
-
0037547120
-
Increased detection of structural templates using alignments of designed sequences
-
Larson SM, Garg A, Desjarlais JR, Pande VS. Increased detection of structural templates using alignments of designed sequences. Proteins 2003;51:390-396.
-
(2003)
Proteins
, vol.51
, pp. 390-396
-
-
Larson, S.M.1
Garg, A.2
Desjarlais, J.R.3
Pande, V.S.4
-
26
-
-
20844438512
-
Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues
-
Anand B, Gowri VS, Srinivasan N. Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues. Bioinformatics 2005;21:2821-2826.
-
(2005)
Bioinformatics
, vol.21
, pp. 2821-2826
-
-
Anand, B.1
Gowri, V.S.2
Srinivasan, N.3
-
27
-
-
3242882168
-
MyHits: A new interactive resource for protein annotation and domain identification
-
Pagni M, Ioannidis V, Ceratti L, Zahn-Zabal M, Jongeneel CV, Falquet L. MyHits: a new interactive resource for protein annotation and domain identification. Nucleic Acids Res 2004;32:W332-W335.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Pagni, M.1
Ioannidis, V.2
Ceratti, L.3
Zahn-Zabal, M.4
Jongeneel, C.V.5
Falquet, L.6
-
28
-
-
0036721254
-
Protein domain identification and improved sequence similarity searching using PSI-BLAST
-
George RA, Heringa J. Protein domain identification and improved sequence similarity searching using PSI-BLAST. Proteins 2002;48:672-681.
-
(2002)
Proteins
, vol.48
, pp. 672-681
-
-
George, R.A.1
Heringa, J.2
-
29
-
-
9144232912
-
UniProt: The universal protein knowledgebase
-
Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS. UniProt: the universal protein knowledgebase. Nucleic Acids Res 2004;32:D115-D119.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.S.15
-
30
-
-
0038273906
-
Holey barrier: Claudins and the regulation of brain endothelial permeability
-
460
-
Matter K, Balda MS. Holey barrier: claudins and the regulation of brain endothelial permeability. J Cell Biol 2003;161:459, 460.
-
(2003)
J Cell Biol
, vol.161
, pp. 459
-
-
Matter, K.1
Balda, M.S.2
|