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Volumn 5, Issue 11, 2006, Pages 3096-3104

A soluble 3D LC/MS/MS proteome of the filamentous cyanobacterium Nostoc punctiforme

Author keywords

Cyanobacteria; Nostoc punctiforme; Proteome analysis; Shotgun peptide sequencing; Systems biology

Indexed keywords

AMMONIA; HYBRID PROTEIN; NITROGEN; PROTEIN HISTIDINE KINASE; PROTEIN SERINE THREONINE KINASE; PROTEOME; TRANSPOSASE;

EID: 33751056968     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr060272m     Document Type: Article
Times cited : (53)

References (46)
  • 1
    • 0000642932 scopus 로고    scopus 로고
    • The fossil record: Tracing the roots of the cyanobacterial lineage
    • Whitton, B. A., and Potts, M., Eds.; Kluwer Acad Publ.: Dordrecht
    • Schopf, J. W. The fossil record: tracing the roots of the cyanobacterial lineage. In The Ecology of Cyanobacteria. Their Diversity in Time and Space; Whitton, B. A., and Potts, M., Eds.; Kluwer Acad Publ.: Dordrecht, 2000; pp 13-35.
    • (2000) The Ecology of Cyanobacteria. Their Diversity in Time and Space , pp. 13-35
    • Schopf, J.W.1
  • 2
    • 0034623416 scopus 로고    scopus 로고
    • When did photosynthesis emerge on Earth?
    • Des Marais, D. J. When did photosynthesis emerge on Earth? Science 2000, 1703-1705.
    • (2000) Science , pp. 1703-1705
    • Des Marais, D.J.1
  • 3
    • 0001341969 scopus 로고    scopus 로고
    • Phylogenetic relationships among the cyanobacteria based on 16S rRNA sequences
    • The Archaea and the deeply branching and phototrophic bacteria. Boone, D. R., and Castenholz, R. W., Eds.; New York: Springer
    • Wilmotte, A.; Herdman, M. Phylogenetic relationships among the cyanobacteria based on 16S rRNA sequences. In: Bergey's Manual of Systematic Bacteriology, 2nd ed.; Volume One, The Archaea and the deeply branching and phototrophic bacteria. Boone, D. R., and Castenholz, R. W., Eds.; New York: Springer; 2001, pp 487-493.
    • (2001) Bergey's Manual of Systematic Bacteriology, 2nd Ed. , vol.1 , pp. 487-493
    • Wilmotte, A.1    Herdman, M.2
  • 4
    • 0036428641 scopus 로고    scopus 로고
    • Cellular differentiation in the cyanobacterium Nostoc punctiforme
    • Meeks, J.; Campbell, E.; Summers, M.; Wong, F. Cellular differentiation in the cyanobacterium Nostoc punctiforme. Arch Microbiol. 2002, 178, 395-403.
    • (2002) Arch Microbiol , vol.178 , pp. 395-403
    • Meeks, J.1    Campbell, E.2    Summers, M.3    Wong, F.4
  • 5
    • 0026684361 scopus 로고
    • Oxygen relations of nitrogen fixation in cyanobacteria
    • Fay, P. Oxygen relations of nitrogen fixation in cyanobacteria. Microbiol. Rev. 1992, 56, 340-373.
    • (1992) Microbiol. Rev. , vol.56 , pp. 340-373
    • Fay, P.1
  • 6
    • 0000368322 scopus 로고
    • Heterocyst metabolism and development
    • Bryant, D. A., Ed.; Kluwer Acad. Publ.: Dordrecht
    • Wolk, C. P.; Ernst, A.; Elhai, J. Heterocyst metabolism and development. In The Molecular Biology of Cyanobacteria; Bryant, D. A., Ed.; Kluwer Acad. Publ.: Dordrecht, 1994; pp 769-823.
    • (1994) The Molecular Biology of Cyanobacteria , pp. 769-823
    • Wolk, C.P.1    Ernst, A.2    Elhai, J.3
  • 7
    • 0037251490 scopus 로고    scopus 로고
    • Symbiotic interactions between Nostoc punctiforme, a multicellular cyanobacterium, and the hornwort Anthoceros punctatus
    • Meeks, J. C. Symbiotic interactions between Nostoc punctiforme, a multicellular cyanobacterium, and the hornwort Anthoceros punctatus. Symbiosis 2003, 34, 55-71.
    • (2003) Symbiosis , vol.34 , pp. 55-71
    • Meeks, J.C.1
  • 8
    • 33744786004 scopus 로고    scopus 로고
    • Molecular mechanisms in the nitrogen-fixing Nostoc-Bryophyte symbiosis
    • Overmann, J., Ed.; Springer-Verlag: Berlin
    • Meeks, J. C. Molecular mechanisms in the nitrogen-fixing Nostoc-Bryophyte symbiosis. In Molecular Basis of Symbiosis; Overmann, J., Ed.; Springer-Verlag: Berlin, 2005; pp 165-196.
    • (2005) Molecular Basis of Symbiosis , pp. 165-196
    • Meeks, J.C.1
  • 11
    • 0000952381 scopus 로고
    • D.I. Studies on nitrogen-fixing blue-green algae I. Growth and nitrogen fixation by Anabaena cylindrica Lemm
    • Allen, M. B.; D. I. Studies on nitrogen-fixing blue-green algae I. Growth and nitrogen fixation by Anabaena cylindrica Lemm. Plant Physiol. 1995, 30, 366-372.
    • (1995) Plant Physiol , vol.30 , pp. 366-372
    • Allen, M.B.1
  • 12
    • 33845184448 scopus 로고
    • Preparation and evaluation of packed capillary liquid chromatography columns with inner diameters from 20 to 50 μm
    • Kennedy, R.; Jorgensen, J. Preparation and evaluation of packed capillary liquid chromatography columns with inner diameters from 20 to 50 μm. Anal. Chem. 1989, 61, 1128-1135.
    • (1989) Anal. Chem. , vol.61 , pp. 1128-1135
    • Kennedy, R.1    Jorgensen, J.2
  • 13
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J.; McCormack, A.; Yates, J., III. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.1    McCormack, A.2    Yates III, J.3
  • 14
    • 0029644596 scopus 로고
    • Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database
    • Yates, J., III; Eng, J.; McCormack, A. Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Anal. Chem. 1995, 67, 3202-3210.
    • (1995) Anal. Chem. , vol.67 , pp. 3202-3210
    • Yates III, J.1    Eng, J.2    McCormack, A.3
  • 15
    • 3042815334 scopus 로고    scopus 로고
    • Trypsin cleaves exclusively C-terminal to arginine and lysine residues
    • Olsen, J.; Ong, S.; Mann, M. Trypsin cleaves exclusively C-terminal to arginine and lysine residues. Mol. Cell Proteomics 2004, 3, 608.
    • (2004) Mol. Cell Proteomics , vol.3 , pp. 608
    • Olsen, J.1    Ong, S.2    Mann, M.3
  • 16
    • 0042972838 scopus 로고    scopus 로고
    • A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: Support vector machine classification of peptide MS/MS spectra and SEQUEST scores
    • Anderson, D. C.; Li, W.; Payan, D. G.; Noble, W. S. A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: Support vector machine classification of peptide MS/MS spectra and SEQUEST scores. J. Proteome Res. 2003, 2, 137-146.
    • (2003) J. Proteome Res. , vol.2 , pp. 137-146
    • Anderson, D.C.1    Li, W.2    Payan, D.G.3    Noble, W.S.4
  • 17
    • 0035106351 scopus 로고    scopus 로고
    • Large scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn, M.; Wolters, D.; Yates, J., III. Large scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol. 2001, 19, 242-247.
    • (2001) Nat Biotechnol , vol.19 , pp. 242-247
    • Washburn, M.1    Wolters, D.2    Yates III, J.3
  • 18
    • 0003243224 scopus 로고    scopus 로고
    • Probabilistic outputs for support vector machines and comparisons to regularized likelihood methods
    • Smola, A., Bartlett, P., Scholkopf, B., Schuurmans, D., Eds.; MIT Press: Cambridge, MA
    • Platt, J. C. Probabilistic outputs for support vector machines and comparisons to regularized likelihood methods. In Advances in Large Margin Classifiers; Smola, A., Bartlett, P., Scholkopf, B., Schuurmans, D., Eds.; MIT Press: Cambridge, MA, 1999; pp 61-74.
    • (1999) Advances in Large Margin Classifiers , pp. 61-74
    • Platt, J.C.1
  • 19
    • 41949134271 scopus 로고    scopus 로고
    • American Society of Microbiology: Washington, D. C
    • Schaecher, M.; Ingraham, J. L.; Neidhardt, F. C. Microbe; American Society of Microbiology: Washington, D. C., 2005; pp 1-530.
    • (2005) Microbe , pp. 1-530
    • Schaecher, M.1    Ingraham, J.L.2    Neidhardt, F.C.3
  • 20
    • 33751051487 scopus 로고    scopus 로고
    • Manuscript in preparation
    • Meeks, J. et al. Manuscript in preparation.
    • Meeks, J.1
  • 21
    • 0028787216 scopus 로고
    • Genetic evidence of a major role for glucose-6-phosphate dehydrogenase in nitrogen fixation and dark growth of the cyanobacterium Nostoc sp. strain ATCC 29133
    • Summers, M. L.; Wallis, I. G.; Campbell, E. L.; Meeks, J. C. Genetic evidence of a major role for glucose-6-phosphate dehydrogenase in nitrogen fixation and dark growth of the cyanobacterium Nostoc sp. strain ATCC 29133. J. Bacteriol. 1995, 177, 6184-6194.
    • (1995) J. Bacteriol. , vol.177 , pp. 6184-6194
    • Summers, M.L.1    Wallis, I.G.2    Campbell, E.L.3    Meeks, J.C.4
  • 22
    • 0001030433 scopus 로고
    • Phycobilisomes: Composition and structure
    • Carr, N. G., Whitton, B. A., Eds.; Blackwell: Oxford
    • Cohen-Bazire, G.; Bryant, D. A. Phycobilisomes: composition and structure. In The Biology of Cyanobacteria; Carr, N. G., Whitton, B. A., Eds.; Blackwell: Oxford, 1982; pp 143-190.
    • (1982) The Biology of Cyanobacteria , pp. 143-190
    • Cohen-Bazire, G.1    Bryant, D.A.2
  • 24
    • 0017859533 scopus 로고
    • The biology and pathology of oxygen radicals
    • McCord J.; Fridovich, I. The biology and pathology of oxygen radicals. Ann. Intern. Med. 1978, 89, 122-127.
    • (1978) Ann. Intern. Med. , vol.89 , pp. 122-127
    • McCord, J.1    Fridovich, I.2
  • 25
    • 0034749530 scopus 로고    scopus 로고
    • Identification and inactivation of three group 2 sigma factor genes in Anabaena sp. strain PCC 7120
    • 2001
    • Khudyakov, I. Y.; Golden, J. W. 2001. Identification and inactivation of three group 2 sigma factor genes in Anabaena sp. strain PCC 7120. J. Bacteriol. 2001, 183, 6667-6675.
    • (2001) J. Bacteriol. , vol.183 , pp. 6667-6675
    • Khudyakov, I.Y.1    Golden, J.W.2
  • 26
    • 0035209926 scopus 로고    scopus 로고
    • Nonribosomal peptide synthetase genes occur in most cyanobacteria genera as evidenced by their distribution in axenic strains of the PCC
    • Christian, G.; Dittmen, E.; Ordorika, L. V.; Rippka, R.; Herdman, M.; Borner, T. Nonribosomal peptide synthetase genes occur in most cyanobacteria genera as evidenced by their distribution in axenic strains of the PCC. Arch. Microbiol. 2001, 176, 452-458.
    • (2001) Arch. Microbiol. , vol.176 , pp. 452-458
    • Christian, G.1    Dittmen, E.2    Ordorika, L.V.3    Rippka, R.4    Herdman, M.5    Borner, T.6
  • 27
    • 33645233343 scopus 로고    scopus 로고
    • Exploring the natural role of microcystins - A review of effects on photoautotrophic organisms
    • Babica, P.; Blaha, L.; Marsalek, B. Exploring the natural role of microcystins - a review of effects on photoautotrophic organisms. J. Phycol. 2006, 42, 9-20.
    • (2006) J. Phycol. , vol.42 , pp. 9-20
    • Babica, P.1    Blaha, L.2    Marsalek, B.3
  • 28
    • 8144227939 scopus 로고    scopus 로고
    • Discovery of rare and highly toxic microcystins from lichen-associated Cyanobacterium nostoc sp. strain IO-102-I
    • Oksanen, I.; Jokela, J.; Fewer, D.; Wahlsten, M.; Rikkinen, J.; Sivonen, K. Discovery of Rare and Highly Toxic Microcystins from Lichen-Associated cyanobacterium Nostoc sp. Strain IO-102-I. Appl. Env. Microbiol. 2004, 70, 5756-5763.
    • (2004) Appl. Env. Microbiol. , vol.70 , pp. 5756-5763
    • Oksanen, I.1    Jokela, J.2    Fewer, D.3    Wahlsten, M.4    Rikkinen, J.5    Sivonen, K.6
  • 29
    • 0038165526 scopus 로고    scopus 로고
    • A two-component system mediates developmentally regulated biosynthesis of a heterocyst polysaccharide
    • Zhou, R.; Wolk, C. P. A two-component system mediates developmentally regulated biosynthesis of a heterocyst polysaccharide. J. Biol. Chem. 2003, 278, 19939-19946.
    • (2003) J. Biol. Chem. , vol.278 , pp. 19939-19946
    • Zhou, R.1    Wolk, C.P.2
  • 30
    • 15244348754 scopus 로고    scopus 로고
    • Anabaena sp. strain PCC 7129 gene devH is required for synthesis of the heterocyst glycolipid layer
    • Ramirez, M. E.; Hebbar, P. B.; Zhou, R.; Wolk, C. P.; Curtis, S. E. Anabaena sp. strain PCC 7129 gene devH is required for synthesis of the heterocyst glycolipid layer. J. Bacteriol. 2005, 187, 2326-2331.
    • (2005) J. Bacteriol. , vol.187 , pp. 2326-2331
    • Ramirez, M.E.1    Hebbar, P.B.2    Zhou, R.3    Wolk, C.P.4    Curtis, S.E.5
  • 31
    • 0036499652 scopus 로고    scopus 로고
    • Classification of the caspase-hemoglobinase fold: Detection of new families and implications for the origin of eukaryotic separins
    • Aravid, I.; Koonin, E. V. Classification of the caspase-hemoglobinase fold: detection of new families and implications for the origin of eukaryotic separins. Proteins 2002, 46, 355-367.
    • (2002) Proteins , vol.46 , pp. 355-367
    • Aravid, I.1    Koonin, E.V.2
  • 32
    • 0035088812 scopus 로고    scopus 로고
    • The hetF gene product is essential to heterocyst differentiation and affects HetR function in the cyanobacterium Nostoc punctiforme
    • Wong, F.; Meeks, J. C. The hetF gene product is essential to heterocyst differentiation and affects HetR function in the cyanobacterium Nostoc punctiforme. J. Bacteriol. 2001, 183, 2654-2661.
    • (2001) J. Bacteriol. , vol.183 , pp. 2654-2661
    • Wong, F.1    Meeks, J.C.2
  • 33
    • 33751038756 scopus 로고    scopus 로고
    • unpublished observations
    • Wong, F.; Meeks, J. C., unpublished observations.
    • Wong, F.1    Meeks, J.C.2
  • 34
    • 0036226288 scopus 로고    scopus 로고
    • Identification of an akinete marker gene in Anabaena variabilis
    • Zhou, R.; Wolk, C. P. Identification of an akinete marker gene in Anabaena variabilis. J. Bacteriol. 2002, 184, 2529-2532.
    • (2002) J. Bacteriol. , vol.184 , pp. 2529-2532
    • Zhou, R.1    Wolk, C.P.2
  • 35
    • 0000197255 scopus 로고    scopus 로고
    • Subsection IV
    • The Archaea and the deeply branching and phototrophic bacteria; Boone, D. R., Castenholz, R. W., Eds.; Springer, New York
    • Rippka, R.; Castenholz, R. W.; Herdman, M. Subsection IV. In Bergey's Manual of Systematic Bacteriology, 2nd ed.; Volume One, The Archaea and the deeply branching and phototrophic bacteria; Boone, D. R., Castenholz, R. W., Eds.; Springer, New York, 2001; pp 562-589.
    • (2001) Bergey's Manual of Systematic Bacteriology, 2nd Ed. , vol.1 , pp. 562-589
    • Rippka, R.1    Castenholz, R.W.2    Herdman, M.3
  • 37
    • 0024235754 scopus 로고
    • Cyanobacterial genetic tools: Current status
    • Houmard, J.; Tandeau de Marsac, N. Cyanobacterial genetic tools: current status. Methods Enzymol. 1988, 167, 808-847.
    • (1988) Methods Enzymol. , vol.167 , pp. 808-847
    • Houmard, J.1    Tandeau De Marsac, N.2
  • 38
  • 40
    • 0345830925 scopus 로고    scopus 로고
    • Biochemical characterization of a membrane bound manganese-containing superoxide dismutase from the cyanobacterium Anabaena PCC 7120
    • Regelsberger, G.; Atzenhofer, W.; Ruker, F.; Peschek, G. A.; Jakopitsch, C.; Paumann, M.; Furtmuller, P. G.; Obinger, C. Biochemical characterization of a membrane bound manganese-containing superoxide dismutase from the cyanobacterium Anabaena PCC 7120. J. Biol. Chem. 2002, 277, 43615-43622.
    • (2002) J. Biol. Chem. , vol.277 , pp. 43615-43622
    • Regelsberger, G.1    Atzenhofer, W.2    Ruker, F.3    Peschek, G.A.4    Jakopitsch, C.5    Paumann, M.6    Furtmuller, P.G.7    Obinger, C.8
  • 41
    • 0024243507 scopus 로고
    • Mutagenesis of cyanobacteria by classical and gene-transfer based methods
    • Golden, S. S. Mutagenesis of cyanobacteria by classical and gene-transfer based methods. Method Enzymol. 1988, 167, 714-727.
    • (1988) Method Enzymol. , vol.167 , pp. 714-727
    • Golden, S.S.1
  • 43
    • 17644390613 scopus 로고    scopus 로고
    • Controlled elimination of intracellular H(2)O(2): Regulation of peroxiredoxin, catalase, and glutathione peroxidase via post-translational modification
    • Rhee S.; Yang K.; Kang S.; Woo H.; Chang T. Controlled elimination of intracellular H(2)O(2): regulation of peroxiredoxin, catalase, and glutathione peroxidase via post-translational modification. Antioxid. Redox Signal. 2005, 7, 619-626.
    • (2005) Antioxid. Redox Signal. , vol.7 , pp. 619-626
    • Rhee, S.1    Yang, K.2    Kang, S.3    Woo, H.4    Chang, T.5
  • 44
    • 0036545614 scopus 로고    scopus 로고
    • Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae
    • Griffin, T.; Gygi, S.; Ideker, T.; Rist, B.; Eng, J.; Hood, L.; Aebersold, R. Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol. Cell Proteomics 2002, 1, 323-333.
    • (2002) Mol. Cell Proteomics , vol.1 , pp. 323-333
    • Griffin, T.1    Gygi, S.2    Ideker, T.3    Rist, B.4    Eng, J.5    Hood, L.6    Aebersold, R.7
  • 46
    • 16344394818 scopus 로고    scopus 로고
    • A transcriptomic and proteomic analysis of the effect of CpG-ODN on human THP-1 monocytic leukemia cells
    • Kuo, C.; Kuo, C.; Liang, C.; Liang, S. A transcriptomic and proteomic analysis of the effect of CpG-ODN on human THP-1 monocytic leukemia cells. Proteomics 2005, 5, 894-906.
    • (2005) Proteomics , vol.5 , pp. 894-906
    • Kuo, C.1    Kuo, C.2    Liang, C.3    Liang, S.4


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