A combined proteome and microarray investigation of inorganic phosphate-induced pre-osteoblast cells

Molecular and Cellular Proteomics

Volumn 4, Issue 9, 2005, Pages 1284-1296

  Conrads, Kelly A ^a   Yi, Ming ^b   Simpson, Kerri A ^a   Lucas, David A ^b   Camalier, Corrine E ^a   Yu, Li Rong ^b   Veenstra, Timothy D ^b   Stephens, Robert M ^b   Conrads, Thomas P ^b   Beck Jr , George R ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

^b SAIC FREDERICK INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; MESSENGER RNA; PHOSPHATE; PROTEOME; TRANSCRIPTION FACTOR FRA 1;

ANIMAL CELL; ARTICLE; CELL CYCLE; CELL FUNCTION; CELL PROLIFERATION; CELL STIMULATION; COMPARATIVE STUDY; CONTROLLED STUDY; CORRELATION ANALYSIS; DATA ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OSTEOBLAST; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN MICROARRAY; PROTEIN PROCESSING; PROTEOMICS; QUANTITATIVE ANALYSIS;

3T3 CELLS; ANIMALS; BLOTTING, WESTERN; CARBON ISOTOPES; CELL PROLIFERATION; FLOW CYTOMETRY; GENE EXPRESSION REGULATION, DEVELOPMENTAL; ISOTOPE LABELING; MASS SPECTROMETRY; MICE; MICROARRAY ANALYSIS; OSTEOBLASTS; PHOSPHATES; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEOME; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, MESSENGER;

ANIMALIA;

EID: 25444469546     PISSN: 15359476     EISSN: None     Source Type: Journal    
DOI: 10.1074/mcp.M500082-MCP200     Document Type: Article

References (39)

1. Quarles, L. D., Yohay, D. A., Lever, L. W., Caton, R., and Wenstrup, R. J. (1992) Distinct proliferative and differentiated stages of murine MC3T3-E1 cells in culture: an in vitro model of osteoblast development. J. Bone Miner. Res. 7, 683-692
2. Sudo, H., Kodama, H. A., Amagai, Y., Yamamoto, S., and Kasai, S. (1983) In vitro differentiation and calcification in a new clonal osteogenic cell line derived from newborn mouse calvaria. J. Cell Biol. 96, 191-198
3. Franceschi, R. T., and Iyer, B. S. (1992) Relationship between collagen synthesis and expression of the osteoblast phenotype in MC3T3-E1 cells. J. Bone Miner. Res. 7, 235-246
4. Beck, G. R., Jr., and Knecht, N. (2003) Osteopontin regulation by inorganic phosphate is ERK1/2-, protein kinase C-, and proteasome-dependent. J. Biol. Chem. 278, 41921-41929
5. Beck, G. R., Jr., Moran, E., and Knecht, N. (2003) Inorganic phosphate regulates multiple genes during osteoblast differentiation, including Nrf2. Exp. Cell Res. 288, 288-300
6. Roussanne, M. C., Lieberherr, M., Souberbielle, J. C., Sarfati, E., Drueke, T., and Bourdeau, A. (2001) Human parathyroid cell proliferation in response to calcium, NPS R-467, calcitriol and phosphate. Eur. J. Clin. Investig. 31, 610-616
7. Glinn, M., Ni, B., Irwin, R. P., Kelley, S. W., Lin, S. Z., and Paul, S. M. (1998) Inorganic Pi increases neuronal survival in the acute early phase following excitotoxic/oxidative insults. J. Neurochem. 70, 1850-1858
8. Kido, S., Miyamoto, K., Mizobuchi, H., Taketani, Y., Ohkido, I., Ogawa, N., Kaneko, Y., Harashima, S., and Takeda, E. (1999) Identification of regulatory sequences and binding proteins in the type II sodium/phosphate cotransporter NPT2 gene responsive to dietary phosphate. J. Biol. Chem. 274, 28256-28263
9. Jono, S., McKee, M. D., Murry, C. E., Shioi, A., Nishizawa, Y., Mori, K., Morii, H., and Giachelli, C. M. (2000) Phosphate regulation of vascular smooth muscle cell calcification. Circ. Res. 87, E10-E17
10. Mansfield, K., Teixeira, C. C., Adams, C. S., and Shapiro, I. M. (2001) Phosphate ions mediate chondrocyte apoptosis through a plasma membrane transporter mechanism. Bone 28, 1-8
11. Takeyama, S., Yoshimura, Y., Deyama, Y., Sugawara, Y., Fukuda, H., and Matsumoto, A. (2001) Phosphate decreases osteoclastogenesis in coculture of osteoblast and bone marrow. Biochem. Biophys. Res. Commun. 282, 798-802
12. Conrads, K. A., Yu, L. R., Lucas, D. A., Zhou, M., Chan, K. C., Simpson, K. A., Schaefer, C. F., Issaq, H. J., Veenstra, T. D., Beck, G. R., Jr., and Conrads, T. P. (2004) Quantitative proteomic analysis of inorganic phosphate-induced murine MC3T3-E1 osteoblast cells. Electrophoresis 25, 1342-1352
13. Young, M. R., Nair, R., Bucheimer, N., Tulsian, P., Brown, N., Chapp, C., Hsu, T. C., and Colburn, N. H. (2002) Transactivation of Fra-1 and consequent activation of AP-1 occur extracellular signal-regulated kinase dependently. Mol. Cell. Biol. 22, 587-598
14. Fisher, L. W., Stubbs, J. T., III, and Young, M. F. (1995) Antisera and cDNA probes to human and certain animal model bone matrix noncollagenous proteins. Acta Orthop. Scand. Suppl. 266, 61-65
15. Beck, G. R., Jr., Sullivan, E. C., Moran, E., and Zerler, B. (1998) Relationship between alkaline phosphatase levels, osteopontin expression, and mineralization in differentiating MC3T3-E1 osteoblasts. J. Cell. Biochem. 68, 269-280
16. Wagner, E. F. (2002) Functions of AP1 (Fos/Jun) in bone development. Ann. Rheum. Dis. 61 (Suppl. 2), ii40-ii42
17. Beck, G. R., Jr. (2003) Inorganic phosphate as a signaling molecule in osteoblast differentiation. J. Cell. Biochem. 90, 234-243
18. Bose, S., French, S., Evans, F. J., Joubert, F., and Balaban, R. S. (2003) Metabolic network control of oxidative phosphorylation: multiple roles of inorganic phosphate. J. Biol. Chem. 278, 39155-39165
19. Klein, B. Y., Gal, I., Libergal, M., and Ben-Bassat, H. (1996) Opposing effects on mitochondrial membrane potential by malonate and levamisole, whose effect on cell-mediated mineralization is antagonistic. J. Cell. Biochem. 60, 139-147
20. Komarova, S. V., Ataullakhanov, F. I., and Globus, R. K. (2000) Bioenergetics and mitochondrial transmembrane potential during differentiation of cultured osteoblasts. Am. J. Physiol. 279, C1220-C1229
21. Johnson, K., Jung, A., Murphy, A., Andreyev, A., Dykens, J., and Terkeltaub, R. (2000) Mitochondrial oxidative phosphorylation is a downstream regulator of nitric oxide effects on chondrocyte matrix synthesis and mineralization. Arthritis Rheum. 43, 1560-1570
22. Adams, C. S., Mansfield, K., Perlot, R. L., and Shapiro, I. M. (2001) Matrix regulation of skeletal cell apoptosis. Role of calcium and phosphate ions. J. Biol. Chem. 276, 20316-20322
23. Ideker, T., Thorsson, V., Ranish, J. A., Christmas, R., Buhler, J., Eng, J. K., Bumgarner, R., Goodlett, D. R., Aebersold, R., and Hood, L. (2001) Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science 292, 929-934
24. Heijne, W. H., Stierum, R. H., Slijper, M., van Bladeren, P. J., and van Ommen, B. (2003) Toxicogenomics of bromobenzene hepatotoxicity: a combined transcriptomics and proteomics approach. Biochem. Pharmacol. 65, 857-875
25. Gygi, S. P., Rochon, Y., Franza, B. R., and Aebersold, R. (1999) Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 19, 1720-1730
26. Fessler, M. B., Malcolm, K. C., Duncan, M. W., and Worthen, G. S. (2002) A genomic and proteomic analysis of activation of the human neutrophil by lipopolysaccharide and its mediation by p38 mitogen-activated protein kinase. J. Biol. Chem. 277, 31291-31302
27. Griffin, T. J., Gygi, S. P., Ideker, T., Rist, B., Eng, J., Hood, L., and Aebersold, R. (2002) Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol. Cell. Proteomics 1, 323-333
28. Greenbaum, D., Jansen, R., and Gerstein, M. (2002) Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts. Bioinformatics 18, 585-596
29. Chen, G., Gharib, T. G., Huang, C. C., Taylor, J. M., Misek, D. E., Kardia, S. L., Giordano, T. J., Iannettoni, M. D., Orringer, M. B., Hanash, S. M., and Beer, D. G. (2002) Discordant protein and mRNA expression in lung adenocarcinomas. Mol. Cell. Proteomics 1, 304-313
30. Kim, C. H., Kim do, K., Choi, S. J., Choi, K. H., Song, K. S., Chi, J., Koo, J. S., Hwang, S. Y., Yoon, J. H., and Seong, J. K. (2003) Proteomic and transcriptomic analysis of interleukin-1 beta treated lung carcinoma cell line. Proteomics 3, 2454-2471
31. Washburn, M. P., Koller, A., Oshiro, G., Ulaszek, R. R., Plouffe, D., Deciu, C., Winzeler, E., and Yates, J. R., III (2003) Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U. S. A. 100, 3107-3112
32. White, S. L., Gharbi, S., Bertani, M. F., Chan, H. L., Waterfield, M. D., and Timms, J. F. (2004) Cellular responses to ErbB-2 overexpression in human mammary luminal epithelial cells: comparison of mRNA and protein expression. Br. J. Cancer 90, 173-181
33. Johnson, M. D., Yu, L. R., Conrads, T. P., Kinoshita, Y., Uo, T., Matthews, J. D., Lee, S. W., Smith, R. D., Veenstra, T. D., and Morrison, R. S. (2004) Proteome analysis of DNA damage-induced neuronal death using high throughput mass spectrometry. J. Biol. Chem. 279, 26685-26697
34. Li, F., Long, T., Lu, Y., Ouyang, Q., and Tang, C. (2004) The yeast cell-cycle network is robustly designed. Proc. Natl. Acad. Sci. U. S. A. 101, 4781-4786
35. Karsenty, G., and Wagner, E. F. (2002) Reaching a genetic and molecular understanding of skeletal development. Dev. Cell 2, 389-406
36. Jochum, W., David, J. P., Elliott, C., Wutz, A., Plenk, H., Jr., Matsuo, K., and Wagner, E. F. (2000) Increased bone formation and osteosclerosis in mice overexpressing the transcription factor Fra-1. Nat. Med. 6, 980-984
37. Eferl, R., Hoebertz, A., Schilling, A. F., Rath, M., Karreth, F., Kenner, L., Amling, M., and Wagner, E. F. (2004) The Fos-related antigen Fra-1 is an activator of bone matrix formation. EMBO J. 23, 2789-2799
38. Vial, E., and Marshall, C. J. (2003) Elevated ERK-MAP kinase activity protects the FOS family member FRA-1 against proteasomal degradation in colon carcinoma cells. J. Cell Sci. 116, 4957-4963
39. Casalino, L., De Cesare, D., and Verde, P. (2003) Accumulation of Fra-1 in ras-transformed cells depends on both transcriptional autoregulation and MEK-dependent post-translational stabilization. Mol. Cell. Biol. 23, 4401-4415