메뉴 건너뛰기




Volumn 1, Issue , 2006, Pages 185-189

Mining and analyzing the topological structure of Protein - Protein interaction networks

Author keywords

Graphs; Networks; Power law; Protein protein interactions; Scale free; Topology

Indexed keywords

DATA MINING; GRAPH THEORY; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; TOPOLOGY;

EID: 33751045851     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1141277.1141318     Document Type: Conference Paper
Times cited : (4)

References (23)
  • 1
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi, A.-L. and Oltvai, Z.N. (2004). Network biology: understanding the cell's functional organization. Nat. Rev. Genet. 5: 101-14.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 101-114
    • Barabasi, A.-L.1    Oltvai, Z.N.2
  • 2
    • 2942544498 scopus 로고    scopus 로고
    • Protein interaction networks from yeast to human
    • Bork, P., et al. (2004) Protein interaction networks from yeast to human. Curr. Opin. Struct. Biol. 14: 292-99.
    • (2004) Curr. Opin. Struct. Biol. , vol.14 , pp. 292-299
    • Bork, P.1
  • 3
    • 0037062448 scopus 로고    scopus 로고
    • Community structure in social and biological networks
    • Girvan, M. and Newman, M.E.J. (2002). Community structure in social and biological networks. Proc. Natl. Acad. Sci. U.S.A. 99:7821-26.
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 7821-7826
    • Girvan, M.1    Newman, M.E.J.2
  • 4
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong, H., et al. (2001). Lethality and centrality in protein networks. Nature 411:41-2.
    • (2001) Nature , vol.411 , pp. 41-42
    • Jeong, H.1
  • 5
    • 3543099834 scopus 로고    scopus 로고
    • Evolution and topology in the yeast protein interaction network
    • Wuchty, S. (2004): Evolution and topology in the yeast protein interaction network. Genome Res. 14: 1310-14.
    • (2004) Genome Res. , vol.14 , pp. 1310-1314
    • Wuchty, S.1
  • 6
    • 0038074373 scopus 로고    scopus 로고
    • Topological structure analysis of the protein-protein interaction network in budding yeast
    • Bu, D., et al. (2003). Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Res. 31: 2443-50.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2443-2450
    • Bu, D.1
  • 7
    • 33746639801 scopus 로고    scopus 로고
    • Mining and analyzing scale-free protein-protein interaction network
    • Hu, X. (2005). Mining and Analyzing Scale-free Protein-Protein Interaction Network, Int. J. Bioinformatics Res. Application 1(1): 81-101.
    • (2005) Int. J. Bioinformatics Res. Application , vol.1 , Issue.1 , pp. 81-101
    • Hu, X.1
  • 8
    • 0036580169 scopus 로고    scopus 로고
    • Protein-protein interactions - Two methods for assessment of the reliability of high throughput observations
    • Deane, C.M., et al. (2002). Protein-protein interactions - two methods for assessment of the reliability of high throughput observations. Mol. Cell. Proteomics 1: 349.
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 349
    • Deane, C.M.1
  • 9
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of small world networks
    • Watts, D.J. and Strogatz, S.H. (1998). Collective dynamics of "small world" networks. Nature 393: 440-42.
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.J.1    Strogatz, S.H.2
  • 10
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabasi, A.-L. and Albert, R. (1999). Emergence of scaling in random networks. Science 286:509-12.
    • (1999) Science , vol.286 , pp. 509-512
    • Barabasi, A.-L.1    Albert, R.2
  • 11
    • 0034614678 scopus 로고    scopus 로고
    • Protein interaction mapping in C. elegans using proteins involved in vulval development
    • Walhout, A.J.M., et al. (2000). Protein interaction mapping in C. elegans using proteins involved in vulval development. Science 287: 116-122.
    • (2000) Science , vol.287 , pp. 116-122
    • Walhout, A.J.M.1
  • 12
    • 9144264169 scopus 로고    scopus 로고
    • A map of the interactome network of the metazoan C. elegans
    • Li, S., et al. (2004). A map of the interactome network of the metazoan C. elegans. Science 303: 540-43.
    • (2004) Science , vol.303 , pp. 540-543
    • Li, S.1
  • 13
    • 0345600247 scopus 로고    scopus 로고
    • A protein interaction map of Drosophila melanogaster
    • Giot, L., et al. (2004). A protein interaction map of Drosophila melanogaster. Science 302: 1727-36.
    • (2004) Science , vol.302 , pp. 1727-1736
    • Giot, L.1
  • 14
    • 1842580761 scopus 로고    scopus 로고
    • Functional and topological characterization of protein interaction networks
    • Yook, S.-H., et al. (2004) Functional and topological characterization of protein interaction networks. Proteomics 4: 928-42.
    • (2004) Proteomics , vol.4 , pp. 928-942
    • Yook, S.-H.1
  • 15
    • 4544357418 scopus 로고    scopus 로고
    • A cross-species study of the protein-protein interaction networks via the random graph approach
    • Ng, K.-L. and Huang, C.-H. (2004). A cross-species study of the protein-protein interaction networks via the random graph approach. BIBE'04.
    • (2004) BIBE'04
    • Ng, K.-L.1    Huang, C.-H.2
  • 16
    • 0346245913 scopus 로고    scopus 로고
    • On the structure of protein-protein interaction networks
    • Thomas, A., et al. (2003). On the structure of protein-protein interaction networks. Biochem. Soc. Trans. 31: 1491-96.
    • (2003) Biochem. Soc. Trans. , vol.31 , pp. 1491-1496
    • Thomas, A.1
  • 18
    • 17844383951 scopus 로고    scopus 로고
    • Characterization and modeling of protein-protein interaction networks
    • Colizza, V., et al. (2005). Characterization and modeling of protein-protein interaction networks. Physica A 352: 1-27.
    • (2005) Physica A , vol.352 , pp. 1-27
    • Colizza, V.1
  • 20
    • 0347755535 scopus 로고    scopus 로고
    • The database of interacting proteins: 2004 update
    • Salwinski, L., et al. (2004) The Database of Interacting Proteins: 2004 update. Nucleic Acids Res. 32: D449-51.
    • (2004) Nucleic Acids Res. , vol.32
    • Salwinski, L.1
  • 21
    • 0037264524 scopus 로고    scopus 로고
    • The GRID: The General Repository for Interaction Datasets
    • Breitkreutz, B.-J., et al. (2003). The GRID: The General Repository for Interaction Datasets. Genome Biol. 4: R23.
    • (2003) Genome Biol. , vol.4
    • Breitkreutz, B.-J.1
  • 22
    • 0037245913 scopus 로고    scopus 로고
    • BIND: The Biomolecular Interaction Network Database
    • Bader, G.D., et al. (2003). BIND: the Biomolecular Interaction Network Database. Nucleic Acids Res. 31:248-50.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 248-250
    • Bader, G.D.1
  • 23
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Bader, G.D. and Hogue, C.W. (2003). An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 4:2
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.