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Volumn 15, Issue 4, 2006, Pages 597-605

Standardising multi-laboratory microsatellite data in Pacific salmon: An historical view of the future

Author keywords

Micro satellite; Oncorhynchus; Pacific salmon; Population genetics

Indexed keywords

BIOMARKER; DNA; LABORATORY METHOD; POPULATION GENETICS; REMOTE SENSING; SALMONID; SATELLITE DATA; SPECIES CONSERVATION;

EID: 33751043223     PISSN: 09066691     EISSN: 16000633     Source Type: Journal    
DOI: 10.1111/j.1600-0633.2006.00201.x     Document Type: Article
Times cited : (41)

References (52)
  • 2
    • 0033910611 scopus 로고    scopus 로고
    • Analysis of microsatellite DNA resolves genetic structure and diversity of chinook salmon (Oncorhynchus tshawytscha) in California's Central Valley
    • Banks, M.A., Rashbrook, V.K., Calavetta, M.J., Dean, C.A. & Hedgecock, D. 2000. Analysis of microsatellite DNA resolves genetic structure and diversity of chinook salmon (Oncorhynchus tshawytscha) in California's Central Valley. Canadian Journal of Fisheries and Aquatic Sciences 57: 915-927.
    • (2000) Canadian Journal of Fisheries and Aquatic Sciences , vol.57 , pp. 915-927
    • Banks, M.A.1    Rashbrook, V.K.2    Calavetta, M.J.3    Dean, C.A.4    Hedgecock, D.5
  • 3
    • 0032984705 scopus 로고    scopus 로고
    • Application of microsatellite DNA variation to estimation of stock composition and escapement of Nass River sockeye salmon (Oncorhynchus nerka)
    • Beacham, T.D. & Wood, C.C. 1999. Application of microsatellite DNA variation to estimation of stock composition and escapement of Nass River sockeye salmon (Oncorhynchus nerka). Canadian Journal of Fisheries and Aquatic Sciences 56: 297-310.
    • (1999) Canadian Journal of Fisheries and Aquatic Sciences , vol.56 , pp. 297-310
    • Beacham, T.D.1    Wood, C.C.2
  • 4
    • 17944371882 scopus 로고    scopus 로고
    • Evaluation and application of microsatellite and major histocompatibility complex variation for stock identification of coho salmon in British Columbia
    • Beacham, T.D., Candy, J.R., Supernault, K.J. et al. 2001. Evaluation and application of microsatellite and major histocompatibility complex variation for stock identification of coho salmon in British Columbia. Transactions of the American Fisheries Society 130: 1116-1155.
    • (2001) Transactions of the American Fisheries Society , vol.130 , pp. 1116-1155
    • Beacham, T.D.1    Candy, J.R.2    Supernault, K.J.3
  • 6
    • 0034983079 scopus 로고    scopus 로고
    • Kinship analysis of Pacific salmon: Insights into mating, homing, and timing of reproduction
    • Bentzen, P., Olsen, J.B., McLean, J.E., Seamons, T.R. & Quinn, T.P. 2001. Kinship analysis of Pacific salmon: Insights into mating, homing, and timing of reproduction. The Journal of Heredity 92: 127-136.
    • (2001) The Journal of Heredity , vol.92 , pp. 127-136
    • Bentzen, P.1    Olsen, J.B.2    McLean, J.E.3    Seamons, T.R.4    Quinn, T.P.5
  • 7
    • 0034196138 scopus 로고    scopus 로고
    • A coordinated research plan for estuarine and ocean research on Pacific salmon
    • Brodeur, R.D., Boehlert, G.W., Casillas, E. et al. 2000. A coordinated research plan for estuarine and ocean research on Pacific salmon. Fisheries 25: 7-16.
    • (2000) Fisheries , vol.25 , pp. 7-16
    • Brodeur, R.D.1    Boehlert, G.W.2    Casillas, E.3
  • 8
    • 0033616565 scopus 로고    scopus 로고
    • Epistasis in allelic expression at upper temperature tolerance QTL in rainbow trout
    • Danzmann, R.G., Jackson, T.R. & Ferguson, M.M. 1999. Epistasis in allelic expression at upper temperature tolerance QTL in rainbow trout. Aquaculture 173: 45-58.
    • (1999) Aquaculture , vol.173 , pp. 45-58
    • Danzmann, R.G.1    Jackson, T.R.2    Ferguson, M.M.3
  • 9
    • 0033851188 scopus 로고    scopus 로고
    • Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals
    • DeWoody, J.A. & Avise, J.C. 2000. Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. Journal of Fish Biology 56: 461-473.
    • (2000) Journal of Fish Biology , vol.56 , pp. 461-473
    • DeWoody, J.A.1    Avise, J.C.2
  • 10
    • 23944481317 scopus 로고    scopus 로고
    • Genetic population structure of central Oregon Coast coho salmon (Oncorhynchus Kisutch)
    • Ford, M.J., Teel, D., Van Doornik, D.M., Kuligowski, D. & Lawson, P.W. 2004. Genetic population structure of central Oregon Coast coho salmon (Oncorhynchus Kisutch). Conservation Genetics 5: 797-812.
    • (2004) Conservation Genetics , vol.5 , pp. 797-812
    • Ford, M.J.1    Teel, D.2    Van Doornik, D.M.3    Kuligowski, D.4    Lawson, P.W.5
  • 11
    • 0028347115 scopus 로고
    • Report of the European DNA profiling group (EDNAP) - Towards standardisation of short tandem repeat (STR) loci
    • Gill, P., Woodroffe, S., Bar, W. et al. 1994. Report of the European DNA profiling group (EDNAP) - towards standardisation of short tandem repeat (STR) loci. Forensic Science International 65: 51-59.
    • (1994) Forensic Science International , vol.65 , pp. 51-59
    • Gill, P.1    Woodroffe, S.2    Bar, W.3
  • 12
    • 0000444819 scopus 로고
    • Use of biochemical genetic variants for identification of sockeye salmon (Oncorhynchus nerka) stocks in Cook Inlet, Alaska
    • Grant, W.S., Milner, G.B., Krasnowski, P. & Utter, F.M. 1980. Use of biochemical genetic variants for identification of sockeye salmon (Oncorhynchus nerka) stocks in Cook Inlet, Alaska. Canadian Journal of Fisheries and Aquatic Sciences 37: 1236-1247.
    • (1980) Canadian Journal of Fisheries and Aquatic Sciences , vol.37 , pp. 1236-1247
    • Grant, W.S.1    Milner, G.B.2    Krasnowski, P.3    Utter, F.M.4
  • 13
    • 0033178456 scopus 로고    scopus 로고
    • Comparative allele sizing can produce inaccurate allele size differences for microsatellites
    • Haberl, M. & Tautz, D. 1999. Comparative allele sizing can produce inaccurate allele size differences for microsatellites. Molecular Ecology 8: 1347-1350.
    • (1999) Molecular Ecology , vol.8 , pp. 1347-1350
    • Haberl, M.1    Tautz, D.2
  • 14
    • 0034863614 scopus 로고    scopus 로고
    • Assigning individual fish to populations using microsatellite DNA markers: Methods and applications
    • Hansen, M.M., Kenchington, E. & Nielsen, E.E. 2001. Assigning individual fish to populations using microsatellite DNA markers: Methods and applications. Fish and Fisheries 2: 93-112.
    • (2001) Fish and Fisheries , vol.2 , pp. 93-112
    • Hansen, M.M.1    Kenchington, E.2    Nielsen, E.E.3
  • 15
    • 0031890821 scopus 로고    scopus 로고
    • Identification of two QTL influencing upper temperature tolerance in rainbow trout (Oncorhynchus mykiss) half-sib families
    • Jackson, T.R., Ferguson, M.M., Danzmann, R.G. et al. 1998. Identification of two QTL influencing upper temperature tolerance in rainbow trout (Oncorhynchus mykiss) half-sib families. Heredity 80: 143-151.
    • (1998) Heredity , vol.80 , pp. 143-151
    • Jackson, T.R.1    Ferguson, M.M.2    Danzmann, R.G.3
  • 16
    • 85047686589 scopus 로고    scopus 로고
    • How many alleles per locus should be used to estimate genetic distance?
    • Kalinowski, S.T. 2002. How many alleles per locus should be used to estimate genetic distance? Heredity 89: 62-65.
    • (2002) Heredity , vol.89 , pp. 62-65
    • Kalinowski, S.T.1
  • 18
    • 0036278356 scopus 로고    scopus 로고
    • Microsatellite allele ladders in two species of Pacific salmon: Preparation and field-test results
    • LaHood, E.S., Moran, P., Olsen, J., Grant, W.S. & Park, L.K. 2002. Microsatellite allele ladders in two species of Pacific salmon: preparation and field-test results. Molecular Ecololgy Notes 2: 187-190.
    • (2002) Molecular Ecololgy Notes , vol.2 , pp. 187-190
    • LaHood, E.S.1    Moran, P.2    Olsen, J.3    Grant, W.S.4    Park, L.K.5
  • 20
    • 0036130276 scopus 로고    scopus 로고
    • Current conservation genetics: Building an ecological approach to the synthesis of molecular and quantitative genetic methods
    • Moran, P. 2002. Current conservation genetics: Building an ecological approach to the synthesis of molecular and quantitative genetic methods. Ecology of Freshwater Fish 11: 30-55.
    • (2002) Ecology of Freshwater Fish , vol.11 , pp. 30-55
    • Moran, P.1
  • 21
    • 0036169626 scopus 로고    scopus 로고
    • Polymerase chain reaction inhibition in historical fish scale mounting cards
    • Moran, P. & Baker, J. 2002. Polymerase chain reaction inhibition in historical fish scale mounting cards. Transactions of the American Fisheries Society 131: 109-119.
    • (2002) Transactions of the American Fisheries Society , vol.131 , pp. 109-119
    • Moran, P.1    Baker, J.2
  • 23
    • 33751057108 scopus 로고    scopus 로고
    • National Research Council. Upstream: Salmon and society in the Pacific Northwest. Washington, DC: National Academy Press
    • National Research Council. 1996. Committee on protection and management of Pacific Northwest anadromous salmonids. Upstream: Salmon and society in the Pacific Northwest. Washington, DC: National Academy Press, 472 pp.
    • (1996) Committee on Protection and Management of Pacific Northwest Anadromous Salmonids , pp. 472
  • 25
    • 0032436229 scopus 로고    scopus 로고
    • Microsatellite analysis of the population structure of a Vancouver Island sockeye salmon (Oncorhynchus nerka) stock complex using nondenaturing gel electrophoresis
    • Nelson, R.J., Beacham, T.D. & Small, M.P. 1998. Microsatellite analysis of the population structure of a Vancouver Island sockeye salmon (Oncorhynchus nerka) stock complex using nondenaturing gel electrophoresis. Molecular Marine Biology and Biotechnology 7: 312-319.
    • (1998) Molecular Marine Biology and Biotechnology , vol.7 , pp. 312-319
    • Nelson, R.J.1    Beacham, T.D.2    Small, M.P.3
  • 26
    • 0041419148 scopus 로고    scopus 로고
    • Population Structure of Sockeye Salmon of the Central Coast of British Columbia: Implications for Recovery Planning
    • Nelson, R.J., Wood, C.C., Cooper, G., Smith, C., Koop, B. 2003. Population Structure of Sockeye Salmon of the Central Coast of British Columbia: Implications for Recovery Planning. North American Journal of Fisheries Management 23: 703-720.
    • (2003) North American Journal of Fisheries Management , vol.23 , pp. 703-720
    • Nelson, R.J.1    Wood, C.C.2    Cooper, G.3    Smith, C.4    Koop, B.5
  • 27
    • 0033372015 scopus 로고    scopus 로고
    • Microsatellite diversity in sympatric reproductive ecotypes of Pacific steelhead (Oncorhynchus mykiss) from the Middle Fork Eel River, California
    • Nielsen, J.L. & Fountain, M.C. 1999. Microsatellite diversity in sympatric reproductive ecotypes of Pacific steelhead (Oncorhynchus mykiss) from the Middle Fork Eel River, California. Ecology of Freshwater Fish 8: 159-168.
    • (1999) Ecology of Freshwater Fish , vol.8 , pp. 159-168
    • Nielsen, J.L.1    Fountain, M.C.2
  • 28
    • 0033370137 scopus 로고    scopus 로고
    • Microsatellite diversity and conservation of a relic trout population: McCloud River redband trout
    • Nielsen, J.L., Crow, K.D. & Fountain, M.C. 1999. Microsatellite diversity and conservation of a relic trout population: McCloud River redband trout. Molecular Ecology 8: S129-S142.
    • (1999) Molecular Ecology , vol.8
    • Nielsen, J.L.1    Crow, K.D.2    Fountain, M.C.3
  • 29
    • 0030300034 scopus 로고    scopus 로고
    • Semiautomated multilocus genotyping of Pacific salmon (Oncorhynchus spp.) using microsatellites
    • Olsen, J.B., Wenburg, J.K. & Bentzen, P. 1996. Semiautomated multilocus genotyping of Pacific salmon (Oncorhynchus spp.) using microsatellites. Molecular Marine Biology and Biotechnology 5: 259-272.
    • (1996) Molecular Marine Biology and Biotechnology , vol.5 , pp. 259-272
    • Olsen, J.B.1    Wenburg, J.K.2    Bentzen, P.3
  • 31
    • 0033954829 scopus 로고    scopus 로고
    • Microsatellites reveal population identity of individual pink salmon to allow supportive breeding of a population at risk of extinction
    • Olsen, J.B., Bentzen, P., Banks, M.A., Shaklee, J.B. & Young, S. 2000. Microsatellites reveal population identity of individual pink salmon to allow supportive breeding of a population at risk of extinction. Transactions of the American Fisheries Society 129: 232-242.
    • (2000) Transactions of the American Fisheries Society , vol.129 , pp. 232-242
    • Olsen, J.B.1    Bentzen, P.2    Banks, M.A.3    Shaklee, J.B.4    Young, S.5
  • 32
    • 0002890017 scopus 로고
    • Use of genetic marks in stock composition analyses
    • In: Ryman, N. & Utter, F., eds. Seattle, WA: Washington Sea Grant, University of Washington Press
    • Pella, J. & Milner, G.B. 1987. Use of genetic marks in stock composition analyses. In: Ryman, N. & Utter, F., eds. Population Genetics and Fishery Management. Seattle, WA: Washington Sea Grant, University of Washington Press, pp. 247-276.
    • (1987) Population Genetics and Fishery Management , pp. 247-276
    • Pella, J.1    Milner, G.B.2
  • 33
    • 1542289616 scopus 로고    scopus 로고
    • Genetic identification of salmonid bones from marine mammal scat
    • Purcell, M., Mackey, G., LaHood, E., Huber, H. & Park, L. 2004. Genetic identification of salmonid bones from marine mammal scat. Fishery Bulletin 102: 213-220.
    • (2004) Fishery Bulletin , vol.102 , pp. 213-220
    • Purcell, M.1    Mackey, G.2    LaHood, E.3    Huber, H.4    Park, L.5
  • 34
    • 0141564882 scopus 로고    scopus 로고
    • Genetic and Phenotypic Evidence of reproductive isolation between seasonal runs of sockeye salmon in Bear Lake, Alaska
    • Ramstad, K.M. Foote, C.J., Olsen, J.B. & Rogers, D. 2003. Genetic and Phenotypic Evidence of reproductive isolation between seasonal runs of sockeye salmon in Bear Lake, Alaska. Transactions of the American Fisheries Society 132: 997-1013.
    • (2003) Transactions of the American Fisheries Society , vol.132 , pp. 997-1013
    • Ramstad, K.M.1    Foote, C.J.2    Olsen, J.B.3    Rogers, D.4
  • 35
    • 0033616549 scopus 로고    scopus 로고
    • Linkage analysis of quantitative trait loci associated with spawning time in rainbow trout (Oncorhynchus mykiss)
    • Sakamoto, T., Danzmann, R.G., Okamoto, N., Ferguson, M.M. & Ihssen, P.E. 1999. Linkage analysis of quantitative trait loci associated with spawning time in rainbow trout (Oncorhynchus mykiss). Aquaculture 173: 33-43.
    • (1999) Aquaculture , vol.173 , pp. 33-43
    • Sakamoto, T.1    Danzmann, R.G.2    Okamoto, N.3    Ferguson, M.M.4    Ihssen, P.E.5
  • 36
    • 0031797904 scopus 로고    scopus 로고
    • DNA and allozyme markers provide concordant estimates of population differentiation: Analysis of US and Canadian populations of Yukon River fall-run chum salmon (Oncorhynchus keta)
    • Scribner, K.T., Crane, P.A., Spearman, W.J. & Seeb, L.W. 1998. DNA and allozyme markers provide concordant estimates of population differentiation: Analysis of US and Canadian populations of Yukon River fall-run chum salmon (Oncorhynchus keta). Canadian Journal of Fisheries and Aquatic Sciences 55: 1748-1758.
    • (1998) Canadian Journal of Fisheries and Aquatic Sciences , vol.55 , pp. 1748-1758
    • Scribner, K.T.1    Crane, P.A.2    Spearman, W.J.3    Seeb, L.W.4
  • 37
    • 3543019773 scopus 로고    scopus 로고
    • Migration of Pacific Rim chum salmon on the high seas: Insights from genetic data
    • Seeb, L.W., Crane, P.A., Kondzela, C.M. et al. 2004. Migration of Pacific Rim chum salmon on the high seas: Insights from genetic data. Environmental Biology of Fishes 69: 21-36.
    • (2004) Environmental Biology of Fishes , vol.69 , pp. 21-36
    • Seeb, L.W.1    Crane, P.A.2    Kondzela, C.M.3
  • 38
    • 0001134712 scopus 로고
    • Operation of a large-scale multiagency stock identification program
    • Shaklee, J.B. & Phelps, S.R. 1990. Operation of a large-scale multiagency stock identification program. American Fisheries Society Symposium 7: 817-830.
    • (1990) American Fisheries Society Symposium , vol.7 , pp. 817-830
    • Shaklee, J.B.1    Phelps, S.R.2
  • 39
    • 0001753584 scopus 로고
    • Need for replicated electrophoretic analysis in multiagency genetic stock identification (GSI) programs: Example from a pink salmon (Oncorhynchus gorbuscha) GSI fisheries study
    • Shaklee, J.B. & White, B.A. 1991. Need for replicated electrophoretic analysis in multiagency genetic stock identification (GSI) programs: Example from a pink salmon (Oncorhynchus gorbuscha) GSI fisheries study. Canadian Journal of Fisheries and Aquatic Sciences 48: 1391-1407.
    • (1991) Canadian Journal of Fisheries and Aquatic Sciences , vol.48 , pp. 1391-1407
    • Shaklee, J.B.1    White, B.A.2
  • 41
    • 0032718203 scopus 로고    scopus 로고
    • Managing fisheries using genetic data: Case studies from four species of Pacific salmon
    • Shaklee, J.B., Beacham, T.D., Seeb, L. & White, B.A. 1999. Managing fisheries using genetic data: Case studies from four species of Pacific salmon. Fisheries Research 43: 45-78.
    • (1999) Fisheries Research , vol.43 , pp. 45-78
    • Shaklee, J.B.1    Beacham, T.D.2    Seeb, L.3    White, B.A.4
  • 42
    • 3342937590 scopus 로고    scopus 로고
    • Have native coho salmon (Oncorhynchus Kisutch) persisted in the Nooksack and Samish rivers despite continous hatchery production throughout the past century?
    • Small, M.P., Pichahchy, A.E., Von Bargen, J.F., & Young, S.F. 2004. Have native coho salmon (Oncorhynchus Kisutch) persisted in the Nooksack and Samish rivers despite continous hatchery production throughout the past century? Conservation Genetics 5: 367-379.
    • (2004) Conservation Genetics , vol.5 , pp. 367-379
    • Small, M.P.1    Pichahchy, A.E.2    Von Bargen, J.F.3    Young, S.F.4
  • 43
    • 1342310577 scopus 로고    scopus 로고
    • Genetic analysis of juvenile coho salmon (Oncorhynchus kisutch) off Oregon and Washington reveals few Columbia River wild fish
    • Teel, D.J., Van Doornik, D.M., Kuligowski, D.R. & Grant, W.S. 2003. Genetic analysis of juvenile coho salmon (Oncorhynchus kisutch) off Oregon and Washington reveals few Columbia River wild fish. Fishery Bulletin 101: 640-652.
    • (2003) Fishery Bulletin , vol.101 , pp. 640-652
    • Teel, D.J.1    Van Doornik, D.M.2    Kuligowski, D.R.3    Grant, W.S.4
  • 44
    • 0026341037 scopus 로고
    • Biochemical genetics and fishery management: An historical perspective
    • Utter, F. 1991. Biochemical genetics and fishery management: An historical perspective. Journal of Fish Biology 39A: 1-20.
    • (1991) Journal of Fish Biology , vol.39 A , pp. 1-20
    • Utter, F.1
  • 45
    • 21144478684 scopus 로고
    • Genetic markers and mixed stock fisheries
    • Utter, F.M. & Ryman, N. 1993. Genetic markers and mixed stock fisheries. Fisheries 18: 11-21.
    • (1993) Fisheries , vol.18 , pp. 11-21
    • Utter, F.M.1    Ryman, N.2
  • 47
    • 0026364289 scopus 로고
    • Pacific salmon, Oncorhynchus spp., and the definition of "species" under the Endangered Species Act
    • Waples, R.S. 1991. Pacific salmon, Oncorhynchus spp., and the definition of "species" under the Endangered Species Act. Marine Fisheries Review 53: 11-22.
    • (1991) Marine Fisheries Review , vol.53 , pp. 11-22
    • Waples, R.S.1
  • 48
    • 0036119258 scopus 로고    scopus 로고
    • A tale of two genotypes: Consistency between two high-throughput genotyping centers
    • Weeks, D.E., Conley, Y.P., Ferrell, R.E., Mah, T.S. & Gorin, M.B. 2002. A tale of two genotypes: Consistency between two high-throughput genotyping centers. Genome Research 12: 430-435.
    • (2002) Genome Research , vol.12 , pp. 430-435
    • Weeks, D.E.1    Conley, Y.P.2    Ferrell, R.E.3    Mah, T.S.4    Gorin, M.B.5
  • 49
    • 0030425028 scopus 로고    scopus 로고
    • Multiplexed systems of microsatellites for genetic analysis in coastal cutthroat trout (Oncorhynchus clarki clarki) and steelhead (Oncorhynchus mykiss)
    • Wenburg, J.K., Olsen, J.B. & Bentzen, P. 1998. Multiplexed systems of microsatellites for genetic analysis in coastal cutthroat trout (Oncorhynchus clarki clarki) and steelhead (Oncorhynchus mykiss). Molecular Marine Biology and Biotechnology 5: 273-283.
    • (1998) Molecular Marine Biology and Biotechnology , vol.5 , pp. 273-283
    • Wenburg, J.K.1    Olsen, J.B.2    Bentzen, P.3
  • 51
    • 2942644930 scopus 로고    scopus 로고
    • Genetic stock identification of steelhead in the Columbia River basin: An evaluation of different molecular markers
    • Winans, G.A., Paquin, M.Z., VanDoornik, D.M. et al. 2004. Genetic stock identification of steelhead in the Columbia River basin: An evaluation of different molecular markers. North American Journal of Fisheries Management 24: 672-685.
    • (2004) North American Journal of Fisheries Management , vol.24 , pp. 672-685
    • Winans, G.A.1    Paquin, M.Z.2    VanDoornik, D.M.3
  • 52
    • 3543030520 scopus 로고    scopus 로고
    • Forensic DNA analysis of Pacific salmonid samples for species and stock identification
    • Withler, R.E., Candy, J.R., Beacham, T.D. & Miller, K.M. 2004. Forensic DNA analysis of Pacific salmonid samples for species and stock identification. Environmental Biology of Fishes 69: 275-285.
    • (2004) Environmental Biology of Fishes , vol.69 , pp. 275-285
    • Withler, R.E.1    Candy, J.R.2    Beacham, T.D.3    Miller, K.M.4


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