Population structure of sockeye salmon of the central coast of British Columbia: Implications for recovery planning

North American Journal of Fisheries Management

Volumn 23, Issue 3, 2003, Pages 703-720

  Nelson, R John ^a   Wood, Chris C ^b   Cooper, Glenn ^a   Smith, Christian ^a   Koop, Ben ^a  

^a UNIVERSITY OF VICTORIA   (Canada)

^b PACIFIC BIOLOGICAL STATION   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

FISHERY MANAGEMENT; GENETIC VARIATION; POPULATION GENETICS; POPULATION STRUCTURE; SALMONID FISHERY; WATERSHED;

CANADA;

ONCORHYNCHUS; ONCORHYNCHUS NERKA; SALMONIDAE;

EID: 0041419148     PISSN: 02755947     EISSN: None     Source Type: Journal    
DOI: 10.1577/M01-194     Document Type: Article

References (64)

1. Adkison, M. D. 1995. Population differentiation in Pacific salmon: adaptation, genetic drift, or the environment? Canadian Journal of Fisheries and Aquatic Sciences 52:2762-2777.
2. Allendorf, F. W., and S. R. Phelps. 1981. Use of allelic frequencies to describe population structure. Canadian Journal of Fisheries and Aquatic Sciences 38:1507-1514.
3. Allendorf, F. W., and N. Ryman. 1987. Genetic management of hatchery stocks. Pages 141-159 in N. Ryman and F. Utter, editors. Population genetics and fishery management. University of Washington Press, Seattle.
4. Allendorf, F. W., and L. W. Seeb. 2000. Concordance of genetic divergence among sockeye salmon populations at allozyme, nuclear DNA and mitochondrial DNA markers. Evolution 54:640-651.
5. Altukhov, Y. P., and E. A. Salmenkova. 1987. Stock transfers relative to natural organization, management and conservation of fish populations. Pages 333-343 in N. Ryman and F. Utter, editors. Population genetics and fishery management. University of Washington Press, Seattle.
6. Banks, M. A., M. S. Blouin, B. A. Baldwin, V. K. Rashbrook, H. A. Fitzgerald, S. M. Blankenship, and D. Hedgecock. 1999. Isolation and inheritance of novel microsatellites in chinook salmon (Oncorhynchus tshawytscha). Journal of Heredity 90:281-288.
7. Brannon, E. L. 1967. Genetic control of migrating behavior of newly emerged sockeye salmon fry. International Pacific Salmon Fisheries Commission Progress Report 16.
8. Burger, C. V., K. T. Scribner, W. J. Spearman, C. O. Swanton, and D. E. Campton. 2000. Genetic contribution of three introduced life history forms of sockeye salmon to colonization of Frazer Lake, Alaska. Canadian Journal of Fisheries and Aquatic Sciences 57:2096-2111.
9. Burger, C. V., W. T. Spearman, and M. A. Cronin. 1997. Genetic differentiation of sockeye salmon from a geologically young Alaskan lake system. Transactions of the American Fisheries Society 126:926-938.
10. Cavalli-Sforza, L. L., and A. W. Edwards. 1967. Phylogenetic analysis. Models and estimation procedures. Evolution 21:550-570.
11. Debevec, E. M., R. B. Gates, M. Masuda, J. J. Pella, J. Reynolds, and L. W. Seeb. 2000. SPAM (version 3.2): statistics package for analyzing mixtures. Journal of Heredity 91:509-510.
12. Excoffier, L., P. E. Smouse, and J. M. Quattro. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491.
13. Felsenstein, J. 1995. PHYLIP 3.5c. University of Washington, Department of Genetics, Seattle.
14. Goudet, J., M. Raymond, T. De Meeüs, and F. Rousset. 1996. Testing differentiation in diploid populations. Genetics 144:1933-1940.
15. Grant, W. S., B. G. Milner, P. Krasnowski, and F. M. Utter. 1980. Use of biochemical genetic variants for identification of sockeye salmon (Oncorhynchus nerka) stocks in Cook Inlet, Alaska. Canadian Journal of Fisheries and Aquatic Sciences 37:1236-1247.
16. Guo, S. W., and E. A. Thompson. 1992. Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometrics 48:361-372.
17. Gustafson, R. G., and, G. A. Winans. 1999. Distribution and population genetic structure of river- and sea-type sockeye salmon in western North America. Ecology of Freshwater Fish 8:181-193.
18. Guthrie, C. M., J. H. Helle, P. Aebersold, G. A. Winans, and A. J. Gharrett. 1994. Preliminary report on the genetic diversity of sockeye salmon populations from southeast Alaska and northern British Columbia. Alaska Fisheries Science Center, Processed Report 93-03, Seattle.
19. Hensleigh, J. E., and A. P. Hendry. 1998. Rheotactic response of fry from beach-spawning populations of sockeye salmon: evolution after selection is relaxed. Canadian Journal of Zoology 76:2186-2193.
20. Hindar, K., N. Ryman, and F. Utter. 1991. Genetic effects of cultured fish on natural fish populations. Canadian Journal of Fisheries and Aquatic Sciences 48:945-957.
21. Holm, S. 1979. A simple sequential rejective multiple test procedure. Scandinavian Journal of Statistics 6: 65-70.
22. Holtby, L. B. 2000. Recommendations for a recovery plan for Rivers Inlet and Smith Inlet sockeye salmon. Fisheries and Oceans Canada, Technical Coordinating Committee Working Group Report, Nanaimo, British Columbia.
23. Lande, R. 1993. Risks of population extinction from demographic and environmental stochasticity and random catastrophes. American Naturalist 142:911-927.
24. Mantel, N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Research 27:209-220.
25. McConnell, S. K., L. Hamilton, D. B. Morris, D. Cook, D. Paquet, P. Bentzen, and J. M. Wright. 1995. Isolation of salmonid microsatellite loci and their application to population genetics of Canadian east coast stocks of Atlantic salmon. Aquaculture 137:19-30.
26. McKinnell, S. M., C. C. Wood, D. T. Rutherford, K. D. Hyatt, and D. W. Welch. 2001. The demise of Owikeno Lake sockeye salmon. North American Journal of Fisheries Management 21:774-791.
27. Mork, J. 1994. Straying and population genetic structure. Aquaculture and Fisheries Management 25(Supplement 2):93-98.
28. Nelson, R. J., and T. D. Beacham. 1999. Isolation and cross species amplification of microsatellite loci useful for study of Pacific salmon. Animal Genetics 30:228-229.
29. Nelson, R. J., T. D. Beacham, and M. P. Small. 1998. Microsatellite analysis of the population structure of a Vancouver Island sockeye salmon (Oncorhynchus nerka) stock complex using nondenaturing gel electrophoresis. Molecular Marine Biology and Biotechnology 7:312-319.
30. Pawson, M. G., and S. Jennings. 1996. A critique of methods for stock identification in marine capture fisheries. Fisheries Research (Amsterdam) 25:203-217.
31. Quinn, T. P. 1993. A review of homing and straying of wild and hatchery-produced salmon. Fisheries Research (Amsterdam) 8:29-44.
32. Raleigh, R. F. 1967. Genetic control in the lakeward migrations of sockeye salmon (Oncorhynchus nerka) fry. Journal of the Fisheries Research Board of Canada 24:2613-2622.
33. Raymond, M., and F. Rousset. 1997. GENEPOP (version 3.1b): an updated version of GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86:248-249.
34. Rice, W. R. 1989. Analyzing tables of statistical tests. Evolution 43:223-225.
35. Routledge, R. D., and J. R. Irvine. 1999. Chance fluctuations and the survival of small salmon stocks. Canadian Journal of Fisheries and Aquatic Sciences 56:1512-1519.
36. Rutherford, D. T. 1997. Rivers and Smith Inlet sockeye. Department of Fisheries and Oceans, Stock Status Report D6-04, Nanaimo, British Columbia.
37. Rutherford, D. T., and C. C. Wood. 2000. Assessment of Rivers and Smith Inlet sockeye salmon with commentary on small sockeye salmon stocks in Statistical Area 8. Canadian Stock Assessment Secretariat 162:1-57.
38. Rutherford, D. T., C. C. Wood, K. D. Hyatt, L. Margolis, T. E. McDonald, B. E. Riddell, and R. E. Withler. 1992. Biological characteristics of coastal populations of sockeye salmon (Oncorhynchus nerka) in British Columbia. Canadian Technical Report of Fisheries and Aquatic Sciences 1849.
39. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd edition. Coldspring Harbor Laboratory Press, New York.
40. Schneider, S., D. Roessli, and L. Excoffier. 1999. Arlequin, version 2.0: a software for population genetic data analysis. Genetics and Biometry Laboratory, University of Geneva. Switzerland.
41. Scribner, K. T., P. A. Crane, W. J. Spearman, and L. W. Seeb. 1998. DNA and allozyme markers provide concordant estimates of U.S. and Canadian populations of Yukon River fall-run chum salmon (Oncorhynchus keta). Canadian Journal of Fisheries and Aquatic Sciences 55:1748-1758.
42. Smith, C. T., B. F. Koop, and R. J. Nelson. 1998. Isolation and characterization of coho salmon (Oncorhynchus kisutch) microsatellites and their use in other salmonids. Molecular Ecology 7:1614-1616.
43. Smouse, P. E., R. S. Spielman, and M. H. Park. 1982. Multiple-locus allocation of individuals to groups as a function of the genetic variation within and differences among human populations. American Naturalist 119:445-463.
44. SPSS. 2001. SPSS 11.0 base system user's guide. SPSS, Chicago.
45. Swofford, D. L., and R. B. Selander. 1981. BIOSYS-1: A FORTRAN program for the comprehensive analysis of electrophoretic data in population genetics and systematics. Journal of Heredity 72:281-283.
46. Utter, F. M., P. Aebersold, J. Helle, and G. A. Winans. 1984. Genetic characterization of populations in the southeastern range of sockeye salmon. Pages 17-32 in J. M. Walton and D. B. Houston, editors. Proceedings of the Olympic wild fish conference. Peninsula College, Port Angeles, Washington.
47. Utter, F. M., G. Milner, G. Stahl, and D. Teel. 1989. Genetic population structure of chinook salmon, Oncorhynchus tshawytscha, in the Pacific Northwest. U.S. National Marine Fisheries Service Fishery Bulletin 87:239-264.
48. Walters, C. J., R. D. Goruk, and D. Radford. 1993. Rivers Inlet sockeye salmon: an experiment in adaptive management. North American Journal of Fisheries Management 13:253-262.
49. Waples, R. S. 1989. Temporal variation in allele frequencies: testing the right hypothesis. Evolution 43: 1236-1251.
50. Waples, R. S. 1991. Genetic interactions between hatchery and wild salmonids: lessons from the Pacific Northwest. Canadian Journal of Fisheries and Aquatic Sciences 48(Supplement 1):124-133.
51. Waples, R. S. 1994. Genetic considerations in recovery efforts for Pacific salmon. Conservation Biology 8: 884-886.
52. Waples, R. S., G. A. Winans, F. M. Utter, and C. Mahnken. 1990. Genetic approaches to the management of Pacific salmon. Fisheries 15(5): 19-25.
53. Weir, B. S., and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
54. Williams, I. V., T. J. Brown, and G. Langford. 1994. Geographic distribution of salmon spawning streams with index of spawner abundance. Canadian Technical Report of Fisheries and Aquatic Sciences 1967.
55. Wilmot, R. L., and C. V. Burger. 1985. Genetic differences among populations of Alaskan sockeye salmon. Transactions of the American Fisheries Society 114:236-243.
56. Winans, G. A., P. B. Aebersold, and R. S. Waples. 1996. Allozyme variability of Oncorhynchus nerka in the Pacific Northwest, with special consideration to the populations of Redfish Lake Idaho. Transactions of the American Fisheries Society 125:645-663.
57. Withler, F. C. 1982. Transplanting Pacific salmon. Canadian Technical Report of Fisheries and Aquatic Sciences 1079.
58. Wood, C. C. 1995. Life history variation and population structure in sockeye salmon. Pages 195-216 in J. L. Nielsen, editor. Evolution and the aquatic ecosystem: defining unique units in population conservation. American Fisheries Society, Symposium 17, Bethesda, Maryland.
59. Wood, C. C., and L. B. Holtby. 1998. Defining conservation units for Pacific salmon using genetic survey data. Pages 233-250 in B. Harvey, C. Ross, D. Greer, and J. Carolsfeld, editors. Action before extinction: an international conference on conservation of fish genetic diversity. World Fisheries Trust, Victoria, British Columbia.
60. Wood, C. C., B. E. Riddell, and D. T. Rutherford. 1987. Alternative juvenile life histories of sockeye salmon (Oncorhynchus nerka) and their contribution to production in the Stikine River, northern British Columbia. Pages 12-21 in H. D. Smith, L. Margolis, and C. C. Wood, editors. Sockeye salmon (Oncorhynchus nerka) population biology and future management. Canadian Special Publication of Fisheries and Aquatic Sciences 96.
61. Wood, C. C., B. E. Riddell, D. T. Rutherford, and R. E. Withler. 1994. Biochemical genetic survey of sockeye salmon (Oncorhynchus nerka) in Canada. Canadian Journal of Fisheries and Aquatic Sciences 51 (Supplement 1):114-131.
62. Wood, F. E., D. C. Schutz, and J. D. Holland. 1970. Physical and biological data to 1968 from the Rivers Inlet sockeye spawning areas. Fisheries Research Board of Canada Manuscript Report 1970-1.
63. Wright, S. 1951. The genetical structure of populations. Annals of Eugenics 15:323-354.
64. Wright, S. 1969. Evolution and genetics of populations. Volume II. The theory of gene frequencies. University of Chicago Press, Chicago.