DNA and allozyme markers provide concordant estimates of population differentiation: Analyses of U.S. and Canadian populations of Yukon River fall-run chum salmon (Oncorhynchus keta)

Canadian Journal of Fisheries and Aquatic Sciences

Volumn 55, Issue 7, 1998, Pages 1748-1758

  Scribner, Kim T ^a,d   Crane, Penelope A ^b   Spearman, William J ^c   Seeb, Lisa W ^b  

^a U S GEOLOGICAL SURVEY   (United States)

^b ALASKA DEPARTMENT OF FISH AND GAME   (United States)

^c U S FISH AND WILDLIFE SERVICE   (United States)

^d MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FISH; GENETIC DIFFERENTIATION; GENETIC MARKER; POPULATION DYNAMICS; RIVER SYSTEM;

NORTH AMERICA; YUKON RIVER;

ONCORHYNCHUS KETA;

EID: 0031797904     PISSN: 0706652X     EISSN: None     Source Type: Journal    
DOI: 10.1139/f98-063     Document Type: Article

References (40)

1. Aebersold, P.B., Winans, G.A., Teel, T.J., Milner G.B., and Utter, F.M. 1987. Manual for starch gel electrophoresis: a method for the detection of genetic variation. NOAA Tech. Rep. NMFS 61.
2. Banks, M.A., Baldwin, B.A., and Hedgecock, D. 1996. Research on chinook salmon (Oncorhynchus tshawytscha) stock structure using microsatellite DNA. Bull. Natl. Res. Inst. Aquacult. Suppl. 2: 5-9.
3. Beacham.T.D. 1996. The use of minisatellite DNA variation for stock identification of chum salmon Oncorhynchus keta. Fish. Bull. U.S. 94: 611-627.
4. Buklis, L.S. 1981. Yukon and Tanana River fall chum tagging studies, 1976-1980. Alaska Dep. Fish Game Info. Lean. 194.
5. Cavalli-Sforza, L.L., and Edwards, A.W.F. 1967. Phylogenetic analysis: models and estimation procedures. Evolution, 21: 550-570.
6. Cockerham, C.C. 1969. Variance of gene frequencies. Evolution, 23: 72-84.
7. Crow, J.F., and Aoki, K. 1984. Group selection for a polygenic trait: estimating the degree of population subdivision. Proc. Natl. Acad. Sci. U.S.A. 81: 6073-6077.
8. Excoffier, L., Smouse, P.E., and Quattro, J.M. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondiral DNA restriction data. Genetics, 131: 479-491.
9. Ferguson, A. 1995. Molecular genetics in fisheries: current and future perspectives. In Molecular genetics in fisheries. Edited by G.R. Carvalho and T.J. Pitcher. Chapman and Hall, Inc., New York.
10. Ferguson, A., Taggart, J.B., Prodohl, P.A., McMeel, O., Thompson, C., Stone, C., McGinnity, P., and Hynes, R.A. 1995. The application of molecular markers to the stocking and conservation of fish populations, with special reference to Salmo. J. Fish Biol. 47(Suppl. A): 103-126.
11. Galvin, P., McKinnel, S., Taggart, J.B., Ferguson, A., O'Farrell, M., and Cross, T.F. 1995. Genetic stock identification of Atlantic salmon using single locus minisatellite DNA profiles. J. Fish Biol. 47(Suppl. A): 186-199.
12. Goldstein, D.B., Linares, A.R., Cavalli-Sforza, L.L., and Feldman, M.W. 1995. An evaluation of genetic distances for use with microsatellite loci. Genetics, 139:463-471.
13. Goudet, J. 1995. A computer program to calculate F-statistics (version 1.2). J. Hered. 86: 485-486.
14. Kondzela, C.M., Guthrie, C.M., Hawkins, S.L., Russell, C.D., Helle, J.H., and Gharrett, AJ. 1994. Genetic relationships among chum salmon populations in southeast Alaska and northern British Columbia. Can. J. Fish. Aquat. Sci. 51(Suppl. 1): 50-64.
15. Krzanowski, W.J., and Marriott, F.H.C. 1994. Multivariate analysis part I: distributions, ordination, and inference. Halsted Press, Great Britain.
16. Lansman, R.A., Shade, R.O., Shapiro, J.F., and Avise, J.C. 1981. The use of restriction endonucleases to measure mitochondrial DNA sequence relatedness in natural populations. III. Techniques and potential applications. J. Mol. Evol. 17: 214-226.
17. Manly, B.F.J. 1985. The statistics of natural selection on animal populations. Chapman and Hall, Inc., New York.
18. Masuda, M., Nelson, S., and Pella, J. 1991. User's manual for GIRLSEM and GIRLSYM. NOAA-NMFS Tech. Rep.
19. McConnell, S., Hamilton, L., Morris, D., Cook, D., Paquet, D., Bentzen, P., and Wright, J. 1995. Isolation of salmonid microsatellite loci and their application to the population genetics of Canadian east coast stocks of Atlantic salmon. Aquaculture, 137: 19-30.
20. Meyer, A. 1993. Evolution of mitochondrial DNA in fish. In Biochemistry and molecular biology of fish. Vol. 2. Edited by P.W. Hochachka and P. Mommsen. Elsevier Press, New York, pp. 1-38.
21. Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. U.S.A. 70: 3321-3323.
22. Nei, M., and Tajima, F. 1981. DNA polymorphism detectable by restriction endonucleases. Genetics, 97: 145-163.
23. O'Reilly, P., and Wright, J.M. 1995. The evolving technology and DNA fingerprinting and its application to fisheries and aquaculture. J. Fish Biol. 47(Suppl. A): 29-55.
24. Park, L.K., and Moran, P. 1994. Developments in molecular genetic techniques in fisheries. Rev. Fish Biol. Fish. 4: 272-299.
25. Park, L., Brainard, M.A., and Dightman, D.A. 1993. Low levels of intraspecific variation in the mitochondiral DNA of chum salmon (Oncorhynchus keta). Mol. Mar. Biol. Biotechnol. 2: 362-370.
26. Park, L.K., Moran, P., and Dightman, D.A. 1995. A polymorphsim in intron D of the Chinook salmon growth hormone 2 gene. Anim. Genet. 26: 285.
27. Pella, J.J., and Milner, G.B. 1987. Use of genetic marks in stock compositions analysis. In Population genetics and fishery management. Edited by N. Ryman and P.M. Utter. University of Washington Press, Seattle, Wash. pp. 247-276.
28. Pella, J.J., Masuda, M., and Nelson, S. 1996. Search algorithms for computing stock composition of a mixture from traits of individuals by maximum likelihood. NOAA-NMFS NOAA Tech. Mem. NMFS-AFSC-61.
29. Phelps, S.R., Leclair, L.L., Young, S., and Blankenship, H.L. 1994. Genetic diversity patterns of chum salmon in the Pacific north-west. Can. J. Fish. Aquat. Sci. 51(Suppl. 1): 65-83.
30. 2 and the problem of small samples. Mol. Biol. Evol. 6: 539-545.
31. Sambrook, J., Fritsch, E.F., and Maniatus, T. 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
32. Scribner, K.T., Gust, J.R., and Fields, R.L. 1996. Isolation and characterization of novel salmon microsatellite loci: cross-species amplification and population genetic applications. Can. J. Fish. Aquat. Sci. 53: 833-841.
33. Shaklee, J.B., Allendorf, F.W., Morizot, D.C., and Whitt, O.S. 1990. Gene nomenclature for protein-coding loci in fish. Trans. Am. Fish. Soc. 119: 2-15.
34. Slatkin, M. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genetics, 139: 457-462.
35. Smouse, P.E., and Ward, R.H. 1978. A comparison of the genetic infrastructure of the ye'cuana and the yanomama: a liklihood analysis of genotypic variation among populations. Genetics, 84: 611-631.
36. Sokal, R.R., and Rohlf, F.J. 1995. Biometry. 3rd ed. Freeman, San Fransisco, Calif.
37. Tessier, N., Bernatchez, L., Presa, P., and Angers, B. 1995. Gene diversity analysis of mitochondrial DNA, microsatellites and allozymes in landlocked Atlantic salmon. J. Fish Biol. 47(Suppl. A): 156-163.
38. Wilmot, R.L., Everett, R.J., Spearman, W.J., and Baccus, R. 1992. Genetic stock identification of Yukon River chum and chinook salmon - 1987 to 1990. Prog. Rep. U.S. Fish Wildl. Serv.
39. Wilmot, R.L., Everett, R.J., Spearman, W.J., Baccus, R., Varnavskaya, N.V., and Putivkin, S.V. 1994. Genetics stock structure of western Alaska chum salmon and a comparison with Russian far east stocks. Can. J. Fish. Aquat. Sci. 51(Suppl. 1): 84-94.
40. Wright, S. 1969. Evolution and the genetics of populations. Vol. 2: The theory of gene frequencies. University of Chicago Press, Chicago, Ill.