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Volumn 244, Issue 1, 2007, Pages 77-80

Walking through protein sequence space

Author keywords

Conserved sequence structure modules; Protein evolution; Protein sequence space; Sequence space walk

Indexed keywords

EVOLUTION; PROTEIN;

EID: 33750989640     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2006.07.027     Document Type: Article
Times cited : (14)

References (21)
  • 3
    • 49149121097 scopus 로고    scopus 로고
    • Batagelj, V., Mrvar, A., 2002. Pajek-analysis and visualization of large networks, in: Graph Drawing, pp. 477-478.
  • 4
    • 0027483434 scopus 로고
    • Empirical and structural models for insertions and deletions in the divergent evolution of proteins
    • Benner S.A., Cohen M.A., and Gonnet G.H. Empirical and structural models for insertions and deletions in the divergent evolution of proteins. J. Mol. Biol. 229 (1993) 1065-1082
    • (1993) J. Mol. Biol. , vol.229 , pp. 1065-1082
    • Benner, S.A.1    Cohen, M.A.2    Gonnet, G.H.3
  • 5
    • 0033972919 scopus 로고    scopus 로고
    • Closed loops of nearly standard size: common basic element of protein structure
    • Berezovsky I.N., Grosberg A.Y., and Trifonov E.N. Closed loops of nearly standard size: common basic element of protein structure. FEBS Lett. 466 (2000) 283-286
    • (2000) FEBS Lett. , vol.466 , pp. 283-286
    • Berezovsky, I.N.1    Grosberg, A.Y.2    Trifonov, E.N.3
  • 6
    • 13044269058 scopus 로고    scopus 로고
    • Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space
    • Bornberg-Bauer E., and Chan H.S. Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space. Proc. Nat. Acad. Sci. USA 96 (1999) 10689-10694
    • (1999) Proc. Nat. Acad. Sci. USA , vol.96 , pp. 10689-10694
    • Bornberg-Bauer, E.1    Chan, H.S.2
  • 7
    • 15544372313 scopus 로고    scopus 로고
    • The architecture of the protein domain universe
    • Dokholyan N.V. The architecture of the protein domain universe. Gene 347 (2005) 199-206
    • (2005) Gene , vol.347 , pp. 199-206
    • Dokholyan, N.V.1
  • 8
    • 0037195119 scopus 로고    scopus 로고
    • Expanding protein universe and its origin from the biological Big Bang
    • Dokholyan N.V., Shakhnovich B., and Shakhnovich E.I. Expanding protein universe and its origin from the biological Big Bang. Proc. Natl. Acad. USA 99 (2002) 14132-14136
    • (2002) Proc. Natl. Acad. USA , vol.99 , pp. 14132-14136
    • Dokholyan, N.V.1    Shakhnovich, B.2    Shakhnovich, E.I.3
  • 9
    • 0033740039 scopus 로고    scopus 로고
    • Towards a covering set of protein family profiles
    • Heger A., and Holm L. Towards a covering set of protein family profiles. Prog. Biophys. Mol. Bio. 73 (2000) 321-337
    • (2000) Prog. Biophys. Mol. Bio. , vol.73 , pp. 321-337
    • Heger, A.1    Holm, L.2
  • 10
    • 0026458378 scopus 로고
    • Amino-acid substitution matrices from protein blocks
    • Henikoff S., and Henikoff J.G. Amino-acid substitution matrices from protein blocks. Proc. Natl. Acad. USA 89 (1992) 10915-10919
    • (1992) Proc. Natl. Acad. USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 11
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin S., and Altschul S.F. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl. Acad. USA 87 (1990) 2264-2268
    • (1990) Proc. Natl. Acad. USA , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 12
    • 0014935646 scopus 로고
    • Natural selection and the concept of a protein space
    • Maynard Smith J. Natural selection and the concept of a protein space. Nature 225 (1970) 563-564
    • (1970) Nature , vol.225 , pp. 563-564
    • Maynard Smith, J.1
  • 14
    • 37649029995 scopus 로고    scopus 로고
    • Sequence-related human proteins cluster by degree of evolutionary conservation
    • Mrowka R., Patzak A., Herzel H., and Holste D. Sequence-related human proteins cluster by degree of evolutionary conservation. Phys. Rev. E 70 (2004)
    • (2004) Phys. Rev. E , vol.70
    • Mrowka, R.1    Patzak, A.2    Herzel, H.3    Holste, D.4
  • 16
    • 0032862380 scopus 로고    scopus 로고
    • Centripetal modules and ancient introns
    • Roy S.W., Nosaka M., de Souza S.J., and Gilbert W. Centripetal modules and ancient introns. Gene 238 (1999) 85-91
    • (1999) Gene , vol.238 , pp. 85-91
    • Roy, S.W.1    Nosaka, M.2    de Souza, S.J.3    Gilbert, W.4
  • 17
    • 0032859647 scopus 로고    scopus 로고
    • Module-intron correlation and intron sliding in family F/10 xylanase genes
    • Sato Y., Niimura Y., Yura K., and Go M. Module-intron correlation and intron sliding in family F/10 xylanase genes. Gene 238 (1999) 93-101
    • (1999) Gene , vol.238 , pp. 93-101
    • Sato, Y.1    Niimura, Y.2    Yura, K.3    Go, M.4
  • 19
    • 0037308797 scopus 로고    scopus 로고
    • Evolutionary aspects of protein structure and folding
    • Trifonov E.N., and Berezovsky I.N. Evolutionary aspects of protein structure and folding. Curr. Opin. Struct. Biol. 13 (2003) 110-114
    • (2003) Curr. Opin. Struct. Biol. , vol.13 , pp. 110-114
    • Trifonov, E.N.1    Berezovsky, I.N.2
  • 21
    • 1442324641 scopus 로고    scopus 로고
    • Funnel-like organization in sequence space determines the distributions of protein stability and folding rate preferred by evolution
    • Xia Y., and Levitt M. Funnel-like organization in sequence space determines the distributions of protein stability and folding rate preferred by evolution. Proteins-Structure Function and Bioinformatics 55 (2004) 107-114
    • (2004) Proteins-Structure Function and Bioinformatics , vol.55 , pp. 107-114
    • Xia, Y.1    Levitt, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.