Genetic characterization of the phenylacetyl-coenzyme A oxygenase from the aerobic phenylacetic acid degradation pathway of Escherichia coli

Applied and Environmental Microbiology

Volumn 72, Issue 11, 2006, Pages 7422-7426

  Fernández, Cristina ^a   Ferrández, Abel ^a,c   Miñambres, Baltasar ^a,b   Díaz, Eduardo ^a   García, José L ^a,b  

^a CENTRO DE INVESTIGACIONES BIOLÓGICAS   (Spain)

^b CSIC   (Spain)

^c DSM NUTRITIONAL PRODUCTS LTD   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; BACTERIA; CHARACTERIZATION; DEGRADATION; ESCHERICHIA COLI; GENETIC ENGINEERING;

AEROBIC PHENYLACETIC ACID; DEGRADATION PATHWAY; PHENYLACETYL-COENZYME A (COA); PRIMARY STRUCTURE;

ENZYMES;

BACTERIAL ENZYME; OXYGENASE; PHENYLACETIC ACID; PHENYLACETYL COENZYME A OXYGENASE; UNCLASSIFIED DRUG;

ACETATE (ESTER); BIODEGRADATION; COLIFORM BACTERIUM; ENZYME ACTIVITY; GENETIC ANALYSIS; OXIC CONDITIONS;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BIODEGRADATION; ENZYME STRUCTURE; ENZYME SUBUNIT; ESCHERICHIA COLI; NONHUMAN; NUCLEOTIDE SEQUENCE; PAAABCDE GENE; PHYLOGENY; PLASMID; PROMOTER REGION;

ACETYL COENZYME A; AEROBIOSIS; ESCHERICHIA COLI; EVOLUTION, MOLECULAR; PHENYLACETATES; PHYLOGENY; PLASMIDS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; PAA;

EID: 33750989084     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.01550-06     Document Type: Article

References (19)

1. Alonso, S., D. Bartolomé-Martín, M. del Álamo, E. Díaz, J. L. García, and J. Perera. 2003. Genetic characterization of the styrene lower catabolic pathway of Pseudomonas sp. strain Y2. Gene 319:71-83.
2. Díaz, E., A. Ferrández, M. A. Prieto, and J. L. García. 2001. Biodegradation of aromatic compounds by Escherichia coli. Microbiol. Mol. Biol. Rev. 65:523-569.
3. Felsenstein, J. 1993. PHYLIP (phylogenetic inference package) version 3.5.1. Department of Genetics, University of Washington, Seattle, Wash.
4. Ferrández, A., J. L. García, and E. Díaz. 2000. Transcriptional regulation of the divergent paa catabolic opérons for phenylacetic acid degradation in Escherichia coli. J. Biol. Chem. 275:12214-12222.
5. Ferrández, A., B. Miñambres, B. García, E. R. Olivera, J. M. Luengo, J. L. García, and E. Díaz. 1998. Catabolism of phenylacetic acid in Escherichia coli. Characterization of a new aerobic hybrid pathway. J. Biol. Chem. 273:25974-25986.
6. Gibbs, H. D. 1927. The indophenol test. J. Biol. Chem. 72:649-664.
7. Hartmann, S., C. Hultschig, W. Eisenreich, G. Fuchs, A. Bacher, and S. Ghisla. 1999. NIH shift in flavine dependent monooxygenation: mechanistic studies with 2-aminobenzoyl-CoA monooxygenase reductase. Proc. Natl. Acad. Sci. USA 96:7831-7836.
8. Ishiyama, D., D. Vujaklija, and J. Davies. 2004. Novel pathway of salicylate degradation by Streptomyces sp. strain WA46. Appl. Environ. Microbiol. 70:1297-1306.
9. Ismail, W., M. El-Said Mohamed, B. L. Wanner, K. A. Datsenko, W. Eisenreich, F. Rohdich, A. Bacher, and G. Fuchs. 2003. Functional genomics by NMR spectroscopy phenylacetate catabolism in Escherichia coli. Eur. J. Biochem. 270:3047-3054.
10. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
11. Leahy, J. G., P. J. Batchelor, and S. M. Morcomb. 2003. Evolution of the soluble diiron monooxygenases. FEMS Microbiol. Rev. 27:449-479.
12. Luengo, J. M., J. L. Garcia, and E. R. Olivera. 2001. The phenylacetyl-CoA catabolon: a complex catabolic unit with broad biotechnological applications. Mol. Microbiol. 39:1434-1442.
13. Martínez-Blanco, H., A. Reglero, L. B. Rodríguez-Aparicio, and J. M. Luengo. 1990. Purification and biochemical characterization of phenyl-acetyl-CoA ligase from Pseudomonas putida. A specific enzyme for the catabolism of phenylacetic acid. J. Biol. Chem. 265:7084-7090.
14. Mohamed, M. E., W. Ismail, J. Heider, and G. Fuchs. 2002. Aerobic metabolism of phenylacetic acids in Azoarcus evansii. Arch. Microbiol. 178:180-192.
15. Navarro-Llorens, J. M., M. A. Patrauchan, G. R. Stewart, J. E. Davies, L. E. Eltis, and W. W. Mohn. 2005. Phenylacetate catabolism in Rhodococcus sp. strain RHA1: a central pathway for degradation of aromatic compounds. J. Bacteriol. 187:4497-4504.
16. Notomista, E., A. Lahm, A. Di Donato, and A. Tramontano. 2003. Evolution of bacterial and archaeal multicomponent monooxygenases. J. Mol. Evol. 56:435-445.
17. Olivera, E. R., B. Miñambres, B. García, C. Muñiz, M. A. Moreno, A. Ferrández, E. Díaz, J. L. García, and J. M. Luengo. 1998. Molecular characterization of the phenylacetic acid catabolic pathway in Pseudomonas putida U: the phenylacetyl-CoA catabolon. Proc. Natl. Acad. Sci. USA 95:6419-6424.
18. Sambrook, J., and D. W. Russell. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
19. Zaar, A., J. Gescher, W. Eisenreich, A. Bacher, and G. Fuchs. 2004. New enzymes involved in aerobic benzoate metabolism in Azoarcus evansii. Mol. Microbiol. 54:223-238.