Development and evaluation of reverse transcription-loop-mediated isothermal amplification assay for rapid and real-time detection of Japanese encephalitis virus

Journal of Clinical Microbiology

Volumn 44, Issue 11, 2006, Pages 4172-4178

  Parida, M M ^a,c   Santhosh, S R ^a   Dash, P K ^a   Tripathi, N K ^a   Saxena, P ^a   Ambuj, S ^a   Sahni, A K ^a   Lakshmuna Rao, P V ^a   Morita, Kouichi ^b  

^a DEFENCE RESEARCH AND DEVELOPMENT ESTABLISHMENT   (India)

^b NAGASAKI UNIVERSITY   (Japan)

^c Division of Virology   (India)

Author keywords

[No Author keywords available]

Indexed keywords

FLUORESCENT DYE;

ANALYTIC METHOD; ARTICLE; CEREBROSPINAL FLUID; CONTROLLED STUDY; CROSS REACTION; DEVELOPING COUNTRY; EVALUATION; GENE AMPLIFICATION; GENE TARGETING; INTERMETHOD COMPARISON; JAPANESE ENCEPHALITIS VIRUS; LABORATORY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION; REVERSE TRANSCRIPTION LOOP MEDIATED ISOTHERMAL AMPLIFICATION ASSAY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; STANDARD; STANDARDIZATION; VALIDATION PROCESS; VIRUS GENE;

ANTIBODIES, VIRAL; CELLS, CULTURED; ENCEPHALITIS VIRUS, JAPANESE; HUMANS; IMMUNOGLOBULIN M; NUCLEIC ACID AMPLIFICATION TECHNIQUES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY;

JAPANESE ENCEPHALITIS VIRUS;

EID: 33750960505     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.01487-06     Document Type: Article

References (25)

1. Banerjee, K. 1996. Emerging viral infections with special references to India. Indian J. Med. Res. 103:177-200.
2. Burke, D. S., A. Nisalak, and M. A. Ussery. 1982. Antibody capture immunoassay detection of Japanese encephalitis virus immunoglobulin M and G antibodies in cerebrospinal fluid. J. Clin. Microbiol. 16:1034-1042.
3. Chan, A. B., and J. D. Fox. 1999. NASBA and other transcription-based amplification methods for research and diagnostic microbiology. Rev. Med. Microbiol. 10:185-196.
4. Dong-Kun, Y., C. H. Kweon, B. H. Kim, S. I. Lim, S. H. Kim, J. H. Kwon, and H. R. Han. 2004. TaqMan reverse transcription polymerase chain reaction for the detection of Japanese encephalitis virus. J. Vet. Sci. 5:345-351.
5. Gould, E. A., and J. C. S. Clegg. 1985. Growth, titration, and purification of Togaviruses, p. 43-78. In B. W. Mahy (ed.), Virology: a practical approach. IRL Press, Oxford, United Kingdom.
6. Hong, T. C. T., Q. L. Mai, D. V. Cuong, M. M. Parida, M. Harumi, N. Tsugunori, F. Hasebe, and K. Morita. 2004. Development and evaluation of a novel loop-mediated isothermal amplification method for rapid detection of severe acute respiratory syndrome coronavirus. J. Clin. Microbiol. 42:1956-1961.
7. Igarashi, A. 1978. Isolation of a Singh's Aedes albopictus cell clone sensitive to Dengue and Chikungunya viruses. J. Gen. Virol. 40:531-544.
8. Igarashi, A., M. Tanaka, K. Morita, T. Takasu, A. Ahmed, D. S. Akram, and M. A. Wagar. 1994. Detection of West Nile and Japanese encephalitis viral genome sequences in cerebrospinal fluid from acute encephalitis cases in Karachi, Pakistan. Microbiol. Immunol. 38:827-830.
9. Kabilan, L., S. Vrati, S. Ramesh, S. Srinivas, M. B. Appaiahgari, N. Arunachalam, V. Thenmozhi, S. M. Kumaravel, P. P. Samuel, and R. Rajendran. 2004. Japanese encephalitis virus is an important cause of encephalitis among children in Cuddalore district, Tamil Nadu, India. J. Clin. Virol. 31:153-159.
10. Kuno, G. 1998. Universal diagnostic RT-PCR protocol for arboviruses. J. Virol. Methods 72:27-41.
11. Mackay, I. M., K. E. Arden, and A. Nitsche. 2002. Real-time PCR in virology. Nucleic Acids Res. 30:1292-1305.
12. Monath, T. P., and F. X. Hinz. 1996. Flaviviridae, p. 961-1034. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Fields virology, 3rd ed., vol. 1. Lippincott-Raven, Philadelphia, Pa.
13. Mori, Y., K. Nagamine, N. Tomita, and T. Nolomi. 2001. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem. Biophys. Res. Commun. 289:150-154.
14. Nagamine, K., T. Hase, and T. Notomi. 2002. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol. Cell Probes 16:223-229.
15. Nolomi, T., H. Okayama, H. Masubuchi, T. Yonekawa, K. Watanabe, N. Amino, and T. Hase. 2000. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 28:e63.
16. Parida, M. M., P. Guillermo, S. Inoue, F. Hasebe, and K. Morita. 2004. Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus. J. Clin. Microbiol. 42:257-263.
17. Parida, M. M., K. Horioke, H. Ishida, P. K. Dash, P. Saxena, A. M. Jana, M. A. Islam, S. Inoue, N. Hosaka, and K. Morita. 2005. Rapid detection and differentiation of Dengue virus serotypes by real-time reverse transcription loop-mediated isothermal amplification assay. J. Clin. Microbiol. 43:2895-2903.
18. Parida, M. M., P. K. Dash, N. K. Tripathi, Ambuj, S. R. Santhosh, P. Saxena, S. Agarwal, A. K. Sahni, S. P. Singh, A. K. Rathi, R. Bhargava, A. Abhyankar, S. K. Verma, P. V. Lakshmana Rao, and K. Sekhar. 2006. Japanese encephalitis outbreak investigation, Gorakhpur, India, 2005. Emerg. Infect. Dis. 12:1427-1430.
19. Reuben, R., and A. Gajanana. 1997. Japanese encephalitis in India. Indian J. Pediatr. 64:243-251.
20. Solomon, T., H. Ni, D. W. C. Beasley, M. Ekkelenkamp, M. J. Cardosa, and A. D. T. Barret. 2003. Origin and evolution of Japanese encephalitis virus in southeast Asia. J. Virol. 77:3091-3098.
21. Solomon, T., L. T. T. Thao, N. M. Dung, R. Kneen, N. T. Hung, A. Nisalak, D. W. Vaughn, J. Farrar, T. T. Hien, N. J. White, and M. J. Cardosa. 1998. Rapid diagnosis of Japanese encephalitis by using an immunoglobulin M dot enzyme immunoassay. J. Clin. Microbiol. 36:2030-2034.
22. Sumiyoshi, H., C. Mori, I. Fuke, K. Morita, S. Kuhara, J. Kondou, Y. Kikuchi, H. Nagamatu, and A. Igarashi. 1987. Complete nucleotide sequence of the Japanese encephalitis virus genome RNA. Virology 161:497-510.
23. Tanaka, M. 1993. Rapid identification of flavivirus using the polymerase chain reaction. J. Virol. Methods 41:311-322.
24. Toriniwa, H., and T. Komiya. 2006. Rapid detection and quantification of Japanese encephalitis virus by real-time reverse transcription loop-mediated isothermal amplification. Microbiol. Immunol. 50:379-387.
25. Vrati, S., R. K. Giri, A. Razdan, and P. Malik. 1999. Complete nucleotide sequence of an Indian isolate of Japanese encephalitis virus: sequence comparison with other strains and phylogenetic analysis. Am. J. Trop. Med. Hyg. 61:677-680.