메뉴 건너뛰기




Volumn 72, Issue 1, 1998, Pages 27-41

Universal diagnostic RT-PCR protocol for arboviruses

Author keywords

Arbovirus; Disease diagnosis; PCR; Universal protocol

Indexed keywords

PRIMER DNA;

EID: 0031838119     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0166-0934(98)00003-2     Document Type: Article
Times cited : (157)

References (51)
  • 1
    • 0029207282 scopus 로고
    • Sensitive and specific colorimetric dot assay to detect eastern equine encephalomyelitis viral RNA in mosquitoes (Diptera:Culicidae) after polymerase chain reaction amplification
    • Armstrong, P., Borovsky, D., Shope, R.E., Morris, C.D., Mitchell, C.J., Karabatsos, N., Komar, N., Spielman, A., 1995. Sensitive and specific colorimetric dot assay to detect eastern equine encephalomyelitis viral RNA in mosquitoes (Diptera:Culicidae) after polymerase chain reaction amplification. J. Med. Entomol. 32, 42-52.
    • (1995) J. Med. Entomol. , vol.32 , pp. 42-52
    • Armstrong, P.1    Borovsky, D.2    Shope, R.E.3    Morris, C.D.4    Mitchell, C.J.5    Karabatsos, N.6    Komar, N.7    Spielman, A.8
  • 2
    • 0029898309 scopus 로고    scopus 로고
    • Enhanced amplification of hepatitis C virus (HCV) cDNA by PCR: Detection of HCV RNA in archival sera
    • Beardsley, A.M., Gowans, E.J., Burrell, C.J., Marmion, B.P., 1996. Enhanced amplification of hepatitis C virus (HCV) cDNA by PCR: detection of HCV RNA in archival sera. J. Clin. Microbiol. 34, 1581-1582.
    • (1996) J. Clin. Microbiol. , vol.34 , pp. 1581-1582
    • Beardsley, A.M.1    Gowans, E.J.2    Burrell, C.J.3    Marmion, B.P.4
  • 3
    • 0027212943 scopus 로고
    • PCR buffer optimization with uniform temperature regimen to facilitate automation
    • Blanchard, M.M., Taillon-Miller, P., Nowotny, P., Nowotney, V., 1993. PCR buffer optimization with uniform temperature regimen to facilitate automation. PCR Methods Appl. 2, 234-240.
    • (1993) PCR Methods Appl. , vol.2 , pp. 234-240
    • Blanchard, M.M.1    Taillon-Miller, P.2    Nowotny, P.3    Nowotney, V.4
  • 4
  • 5
    • 2142773830 scopus 로고    scopus 로고
    • Improved purification yields of RNA by RNeasy®
    • Bonham, M.J., Danielpour, D., 1996. Improved purification yields of RNA by RNeasy®. BioTechniques 21, 57-60.
    • (1996) BioTechniques , vol.21 , pp. 57-60
    • Bonham, M.J.1    Danielpour, D.2
  • 8
    • 0027428302 scopus 로고
    • The Langat model for tick-borne encephalitis virus. Specific detection by RT-PCR
    • Campbell, J., Iacono-Connors, L., Walz, S., Schultz, W., 1993. The Langat model for tick-borne encephalitis virus. Specific detection by RT-PCR. J. Virol. Methods 44, 235-240.
    • (1993) J. Virol. Methods , vol.44 , pp. 235-240
    • Campbell, J.1    Iacono-Connors, L.2    Walz, S.3    Schultz, W.4
  • 9
    • 0028458471 scopus 로고
    • Detection and serotyping of dengue viruses by PCR: A simple, rapid method for the isolation of viral RNa from infected mosquito larvae
    • Chan, S.-Y., Kautner, I., Lam, S.K., 1994. Detection and serotyping of dengue viruses by PCR: a simple, rapid method for the isolation of viral RNA from infected mosquito larvae. Southeast Asian J. Trop. Med. Public Health 25, 258-261.
    • (1994) Southeast Asian J. Trop. Med. Public Health , vol.25 , pp. 258-261
    • Chan, S.-Y.1    Kautner, I.2    Lam, S.K.3
  • 10
    • 0028118377 scopus 로고
    • An integrated target sequence and signal amplification assay, reverse transcriptase-PCR enzyme-linked immunosorbent assay to detect and characterize flaviviruses
    • Chang, G.-J., Trent, D.W., Vorndam, A.V., Vergne, E., Kinney, R.M., Mitchell, C.J., 1994. An integrated target sequence and signal amplification assay, reverse transcriptase-PCR enzyme-linked immunosorbent assay to detect and characterize flaviviruses. J. Clin. Microbiol. 32, 477-483.
    • (1994) J. Clin. Microbiol. , vol.32 , pp. 477-483
    • Chang, G.-J.1    Trent, D.W.2    Vorndam, A.V.3    Vergne, E.4    Kinney, R.M.5    Mitchell, C.J.6
  • 11
    • 0031044819 scopus 로고    scopus 로고
    • Highly sensistive method to detect mRNA in individual cells by direct RT-PCR using Tth DNA polymerase
    • Chiocchia, G., Smith, K.A., 1997. Highly sensistive method to detect mRNA in individual cells by direct RT-PCR using Tth DNA polymerase. BioTechniques 22, 312-317.
    • (1997) BioTechniques , vol.22 , pp. 312-317
    • Chiocchia, G.1    Smith, K.A.2
  • 12
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidium thiocyanate-phenolchloroform extraction
    • Chomczynski, P., Sacchi, N., 1987. Single-step method of RNA isolation by acid guanidium thiocyanate-phenolchloroform extraction. Anal. Chem. 162, 156-159.
    • (1987) Anal. Chem. , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 13
    • 0027324667 scopus 로고
    • Ultra-rapid, simple, sensitive, and economical silica method for extraction of dengue viral RNA from clinical specimens and mosquitoes by reverse transcriptase chain reaction
    • Chungue, E., Roche, C., Lefevre, M.-F., Barbazan, P., Chanteau, S., 1993. Ultra-rapid, simple, sensitive, and economical silica method for extraction of dengue viral RNA from clinical specimens and mosquitoes by reverse transcriptase chain reaction. J. Med. Virol. 40, 142-145.
    • (1993) J. Med. Virol. , vol.40 , pp. 142-145
    • Chungue, E.1    Roche, C.2    Lefevre, M.-F.3    Barbazan, P.4    Chanteau, S.5
  • 14
    • 0004748154 scopus 로고
    • Introduction to PCR for viral diagnosis
    • Clewley, J.P. (Ed.), CRC Press, Boca Raton, FL
    • Clewley, J.P., 1995. Introduction to PCR for viral diagnosis. In: Clewley, J.P. (Ed.), The Polymerase Chain Reaction (PCR) for Human Viral Diagnosis. CRC Press, Boca Raton, FL, pp. 1-12.
    • (1995) The Polymerase Chain Reaction (PCR) for Human Viral Diagnosis , pp. 1-12
    • Clewley, J.P.1
  • 16
    • 0025000308 scopus 로고
    • Identification of dengue sequences by genomic amplification: Rapid diagnosis of dengue virus serotypes in peripheral blood
    • Deubel, V., Laille, M., Hugnot, J.-P., Chungue, E., Guesdom, J.-L., Drouet, M.T., Bassot, S., Chorrier, D., 1990. Identification of dengue sequences by genomic amplification: rapid diagnosis of dengue virus serotypes in peripheral blood. J. Virol. Methods 30, 41-54.
    • (1990) J. Virol. Methods , vol.30 , pp. 41-54
    • Deubel, V.1    Laille, M.2    Hugnot, J.-P.3    Chungue, E.4    Guesdom, J.-L.5    Drouet, M.T.6    Bassot, S.7    Chorrier, D.8
  • 17
    • 0027450049 scopus 로고
    • A computer program for the design of PCR primers for diagnosis of highly variable genomes
    • Dopazo, J., Sobrino, F., 1993. A computer program for the design of PCR primers for diagnosis of highly variable genomes. J. Virol. Methods 41, 157-166.
    • (1993) J. Virol. Methods , vol.41 , pp. 157-166
    • Dopazo, J.1    Sobrino, F.2
  • 19
    • 0029923481 scopus 로고    scopus 로고
    • High and low annealing temperature increase both specificity and yield in touchdown and stepdown PCR
    • Hecker, K.H., Roux, K.H., 1996. High and low annealing temperature increase both specificity and yield in touchdown and stepdown PCR. BioTechniques 20, 478-485.
    • (1996) BioTechniques , vol.20 , pp. 478-485
    • Hecker, K.H.1    Roux, K.H.2
  • 21
    • 0027290716 scopus 로고
    • Detection of Ockelbo virus RNA in skin biopsies by polymerase chain reaction
    • Horling, J., Vene, S., Franzen, C., Niklasson, B., 1993. Detection of Ockelbo virus RNA in skin biopsies by polymerase chain reaction. J. Clin. Microbiol. 31, 2004-2009.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 2004-2009
    • Horling, J.1    Vene, S.2    Franzen, C.3    Niklasson, B.4
  • 22
    • 0026512586 scopus 로고
    • Use of the polymerase chain reaction for the sensitive detection of St. Louis encephalitis viral RNA
    • Howe, D.K., Vodkin, M.H., Novak, R.J., Shope, R.E., McLaughlin, G.L., 1992. Use of the polymerase chain reaction for the sensitive detection of St. Louis encephalitis viral RNA. J. Virol. Methods 36, 101-110.
    • (1992) J. Virol. Methods , vol.36 , pp. 101-110
    • Howe, D.K.1    Vodkin, M.H.2    Novak, R.J.3    Shope, R.E.4    McLaughlin, G.L.5
  • 23
    • 0002367719 scopus 로고
    • Optimization of PCRs
    • Innis, M.A., Gelfand, D.H., Sninsky, J.J., White, T.J. (Eds.), Academic Press, San Diego, CA
    • Innis, M.A., Gelfand, D.H., 1990. Optimization of PCRs. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J., White, T.J. (Eds.), PCR Protocols: a Guide Tomethods and Applications. Academic Press, San Diego, CA, pp. 1-12.
    • (1990) PCR Protocols: a Guide Tomethods and Applications , pp. 1-12
    • Innis, M.A.1    Gelfand, D.H.2
  • 24
    • 0030897307 scopus 로고    scopus 로고
    • Detection of Colorado tick fever virus by using reverse transcriptase PCR and application of the technique in laboratory diagnosis
    • Johnson, A.J., Karabatsos, N., Lanciotti, R.S., 1997. Detection of Colorado tick fever virus by using reverse transcriptase PCR and application of the technique in laboratory diagnosis. J. Clin. Microbiol. 35, 1203-1208.
    • (1997) J. Clin. Microbiol. , vol.35 , pp. 1203-1208
    • Johnson, A.J.1    Karabatsos, N.2    Lanciotti, R.S.3
  • 25
    • 0029144353 scopus 로고
    • Dengue virus type 2 unresponsive to the current PCR primer: Construction of a new PCR primer to detect all strains of dengue virus type 2
    • Kameoka, Y., Hirota, N., Kobayashi, M., Arai, Y., Kitano, T., Yamada, K., Yamamoto, K., 1995. Dengue virus type 2 unresponsive to the current PCR primer: construction of a new PCR primer to detect all strains of dengue virus type 2. Trop. Med. (Nagasaki) 37, 65-72.
    • (1995) Trop. Med. (Nagasaki) , vol.37 , pp. 65-72
    • Kameoka, Y.1    Hirota, N.2    Kobayashi, M.3    Arai, Y.4    Kitano, T.5    Yamada, K.6    Yamamoto, K.7
  • 26
    • 0028120046 scopus 로고
    • A distinctive property of Tth DNA polymerase: Enzymatic amplification in the presence of phenol
    • Katcher, H.L., Schwartz, I., 1994. A distinctive property of Tth DNA polymerase: enzymatic amplification in the presence of phenol. BioTechniques 16, 84-92.
    • (1994) BioTechniques , vol.16 , pp. 84-92
    • Katcher, H.L.1    Schwartz, I.2
  • 27
    • 0027364307 scopus 로고
    • Sensitive identification of bluetongue virus serogroup by a colorimetric dual oligonucleotide sorbent assay of amplified viral nucleic acid
    • Katz, J.B., Aalstad, A.D., Gustafson, G.A., Moser, K.M., 1993. Sensitive identification of bluetongue virus serogroup by a colorimetric dual oligonucleotide sorbent assay of amplified viral nucleic acid. J. Clin. Microbiol. 31, 3028-3030.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 3028-3030
    • Katz, J.B.1    Aalstad, A.D.2    Gustafson, G.A.3    Moser, K.M.4
  • 28
    • 0029983436 scopus 로고    scopus 로고
    • Detecting Bunyaviruses of the Bunyamwera and California serogroups by a PCR technique
    • Kuno, G., Mitchell, C.J., Chang, G.-J., Smith, G.C., 1996. Detecting Bunyaviruses of the Bunyamwera and California serogroups by a PCR technique. J. Clin. Microbiol. 34, 1184-1188.
    • (1996) J. Clin. Microbiol. , vol.34 , pp. 1184-1188
    • Kuno, G.1    Mitchell, C.J.2    Chang, G.-J.3    Smith, G.C.4
  • 30
    • 0026580422 scopus 로고
    • Rapid detection and typing of dengue viruses from clinical samples by using reverse transcriptase-polymerase chain reaction
    • Lanciotti, R., Calisher, C.H., Gubler, D.J., Chang, G.-J., Vorndam, A.V., 1992. Rapid detection and typing of dengue viruses from clinical samples by using reverse transcriptase-polymerase chain reaction. J. Clin. Microbiol. 30, 545-551.
    • (1992) J. Clin. Microbiol. , vol.30 , pp. 545-551
    • Lanciotti, R.1    Calisher, C.H.2    Gubler, D.J.3    Chang, G.-J.4    Vorndam, A.V.5
  • 31
    • 0025361539 scopus 로고
    • A computer program for selection of oligonucleotide primers for polymerase chain reaction
    • Lowe, T., Sharefkin, J., Yang, S.Q., Dieffenbach, C.W., 1990. A computer program for selection of oligonucleotide primers for polymerase chain reaction. Nucleic Acids Res. 18, 1757-1761.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 1757-1761
    • Lowe, T.1    Sharefkin, J.2    Yang, S.Q.3    Dieffenbach, C.W.4
  • 32
    • 0030911899 scopus 로고    scopus 로고
    • Characterization of arenaviruses using a family-specific primer set for RT-PCR amplification and RFLP analysis - Its potential use for detection of uncharacterized arenaviruses
    • Lozano, M.E., Posik, D.M., Albarino, C.G., Schujman, G., Ghiringhelli, P.D., Calderon, G., Sabattini, M., Romanowski, V., 1997. Characterization of arenaviruses using a family-specific primer set for RT-PCR amplification and RFLP analysis - its potential use for detection of uncharacterized arenaviruses. Virus Res. 49, 79-90.
    • (1997) Virus Res. , vol.49 , pp. 79-90
    • Lozano, M.E.1    Posik, D.M.2    Albarino, C.G.3    Schujman, G.4    Ghiringhelli, P.D.5    Calderon, G.6    Sabattini, M.7    Romanowski, V.8
  • 33
    • 0026044083 scopus 로고
    • Rapid identification of dengue virus serotypes by using polymerase chain reaction
    • Morita, K., Tanaka, M., Igarashi, A., 1991. Rapid identification of dengue virus serotypes by using polymerase chain reaction. J. Clin. Microbiol. 29, 2107-2110.
    • (1991) J. Clin. Microbiol. , vol.29 , pp. 2107-2110
    • Morita, K.1    Tanaka, M.2    Igarashi, A.3
  • 34
    • 0029131239 scopus 로고
    • Detection of hepatitis C virus RNA by methods using phenol-chloroform or silica purification
    • Morsica, G., Novati, R., Lazzarin, A., 1995. Detection of hepatitis C virus RNA by methods using phenol-chloroform or silica purification. J. Clin. Microbiol. 33, 2522-2523.
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 2522-2523
    • Morsica, G.1    Novati, R.2    Lazzarin, A.3
  • 35
    • 0027935520 scopus 로고
    • Highly sensitive detection of viral RNA genomes in blood specimens by an optimized reverse transcription-polymerase chain reaction
    • Murakami, S., Takahashi, Y., Yoshida, S., Fuke, I., Ohmae, K., Mori, C., Takagi, M., Takamizawa, A., Okayama, H., 1994. Highly sensitive detection of viral RNA genomes in blood specimens by an optimized reverse transcription-polymerase chain reaction. J. Med. Virol. 43, 175-181.
    • (1994) J. Med. Virol. , vol.43 , pp. 175-181
    • Murakami, S.1    Takahashi, Y.2    Yoshida, S.3    Fuke, I.4    Ohmae, K.5    Mori, C.6    Takagi, M.7    Takamizawa, A.8    Okayama, H.9
  • 37
    • 0031461179 scopus 로고    scopus 로고
    • Genus-specific detection of Alphaviruses by a seminested reverse transcription-polymerase chain reaction
    • Pfeffer, M., Proebster, B., Kinney, R.M., Kaaden, O.-R., 1997. Genus-specific detection of Alphaviruses by a seminested reverse transcription-polymerase chain reaction. Am. J. Trop. Med. Hyg. 57, 709-718.
    • (1997) Am. J. Trop. Med. Hyg. , vol.57 , pp. 709-718
    • Pfeffer, M.1    Proebster, B.2    Kinney, R.M.3    Kaaden, O.-R.4
  • 39
    • 0027237495 scopus 로고
    • Rapid detection of vesicular stomatitis virus New Jersey serotype in clinical samples by using polymerase chain reaction
    • Rodriguez, L.L., Letchworth, G.J., Spiropoulou, C.F., Nichol, S.T., 1993. Rapid detection of vesicular stomatitis virus New Jersey serotype in clinical samples by using polymerase chain reaction. J. Clin. Microbiol. 31, 2016-2020.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 2016-2020
    • Rodriguez, L.L.1    Letchworth, G.J.2    Spiropoulou, C.F.3    Nichol, S.T.4
  • 40
    • 0029137215 scopus 로고
    • Priming efficiency in PCR
    • Rychlik, W., 1995. Priming efficiency in PCR. BioTechniques 18, 84-90.
    • (1995) BioTechniques , vol.18 , pp. 84-90
    • Rychlik, W.1
  • 42
    • 0028851746 scopus 로고
    • Nested RT-PCR for detection of sandfly fever virus, serotype Toscana, in clinical specimens, with confirmation by nucleotide sequence analysis
    • Schwarz, T.F., Jager, G., Gilch, S., Nitschko, H., 1995. Nested RT-PCR for detection of sandfly fever virus, serotype Toscana, in clinical specimens, with confirmation by nucleotide sequence analysis. Res. Virol. 146, 355-362.
    • (1995) Res. Virol. , vol.146 , pp. 355-362
    • Schwarz, T.F.1    Jager, G.2    Gilch, S.3    Nitschko, H.4
  • 43
    • 0028170636 scopus 로고
    • Sensitive detection of Ross River virus - A one-tube nested RT-PCR
    • Sellner, L.N., Coelen, R.J., MacKenzie, J.S., 1994. Sensitive detection of Ross River virus - a one-tube nested RT-PCR. J. Virol. Methods 49, 47-58.
    • (1994) J. Virol. Methods , vol.49 , pp. 47-58
    • Sellner, L.N.1    Coelen, R.J.2    MacKenzie, J.S.3
  • 44
    • 0028864668 scopus 로고
    • Identification of widespread Helicobacter hepaticus infection in feces in commercial mouse colonies by culture and PCR assay
    • Shames, B., Fox, J.G., Dewhirst, F., Yan, L., Shen, Z., Taylor, N.S., 1995. Identification of widespread Helicobacter hepaticus infection in feces in commercial mouse colonies by culture and PCR assay. J. Clin. Microbiol. 33, 2968-2972.
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 2968-2972
    • Shames, B.1    Fox, J.G.2    Dewhirst, F.3    Yan, L.4    Shen, Z.5    Taylor, N.S.6
  • 45
    • 0002053819 scopus 로고
    • The design of primers for PCR
    • Griffin, H.G., Griffin, A.M. (Eds.), CRC Press, Boca Raton, FL
    • Sharrocks, A.D., 1994. The design of primers for PCR. In: Griffin, H.G., Griffin, A.M. (Eds.), PCR Technology -Current Investigations. CRC Press, Boca Raton, FL, pp. 5-11.
    • (1994) PCR Technology -Current Investigations , pp. 5-11
    • Sharrocks, A.D.1
  • 46
    • 0027526229 scopus 로고
    • Rapid identification of flavivirus using the polymerase chain reaction
    • Tanaka, M., 1993. Rapid identification of flavivirus using the polymerase chain reaction. J. Virol. Methods 41, 311-322.
    • (1993) J. Virol. Methods , vol.41 , pp. 311-322
    • Tanaka, M.1
  • 47
    • 0026722260 scopus 로고
    • Non-random reassortment between the tripartite RNA genomes of la Crosse and snowshoe hare viruses
    • Urquidi, V., Bishop, D.H.L., 1992. Non-random reassortment between the tripartite RNA genomes of La Crosse and snowshoe hare viruses. J. Gen. Virol. 73, 2255-2265.
    • (1992) J. Gen. Virol. , vol.73 , pp. 2255-2265
    • Urquidi, V.1    Bishop, D.H.L.2
  • 50
    • 0028307546 scopus 로고
    • PCR based detection of arboviral RNA from mosquitoes homogenized in detergent
    • Vodkin, M.H., Streit, T., Mitchell, C.J., McLaughlin, G.L., Novak, R.J., 1994. PCR based detection of arboviral RNA from mosquitoes homogenized in detergent. BioTechniques 17, 114-116.
    • (1994) BioTechniques , vol.17 , pp. 114-116
    • Vodkin, M.H.1    Streit, T.2    Mitchell, C.J.3    McLaughlin, G.L.4    Novak, R.J.5
  • 51
    • 0025695764 scopus 로고
    • Detection of an arbovirus in an invertebrate and a vertebrate host using the polymerase chain reaction
    • Ward, V.K., Marriott, A.C., Booth, T.F., El-Ghorr, A.A., Nuttall, P.A., 1990. Detection of an arbovirus in an invertebrate and a vertebrate host using the polymerase chain reaction. J. Virol. Methods 30, 291-300.
    • (1990) J. Virol. Methods , vol.30 , pp. 291-300
    • Ward, V.K.1    Marriott, A.C.2    Booth, T.F.3    El-Ghorr, A.A.4    Nuttall, P.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.