-
1
-
-
0035032570
-
Statistical design and the analysis of gene expression microarray data
-
Kerr MK, Churchill GA: Statistical design and the analysis of gene expression microarray data. Genet Res 2001, 77:123-128.
-
(2001)
Genet Res
, vol.77
, pp. 123-128
-
-
Kerr, M.K.1
Churchill, G.A.2
-
2
-
-
0642309738
-
Evaluation of normalization methods for microarray data
-
Park T, Yi SG, Kang SH, Lee S, Lee YS, Simon R: Evaluation of normalization methods for microarray data. BMC Bioinformatics 2003, 4:33.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 33
-
-
Park, T.1
Yi, S.G.2
Kang, S.H.3
Lee, S.4
Lee, Y.S.5
Simon, R.6
-
3
-
-
0037287998
-
Normalization methods for analysis of microarray gene-expression data
-
Chen YJ, Kodell R, Sistare F, Thompson KL, Morris S, Chen JJ: Normalization methods for analysis of microarray gene-expression data. J Biopharm Stat 2003, 13:57-74.
-
(2003)
J Biopharm Stat
, vol.13
, pp. 57-74
-
-
Chen, Y.J.1
Kodell, R.2
Sistare, F.3
Thompson, K.L.4
Morris, S.5
Chen, J.J.6
-
4
-
-
0038441481
-
Monitoring global messenger RNA changes in externally controlled microarray experiments
-
van de Peppel J, Kemmeren P, van Bakel H, Radonjic M, van Leenen D, Holstege FC: Monitoring global messenger RNA changes in externally controlled microarray experiments. EMBO Rep 2003, 4:387-393.
-
(2003)
EMBO Rep
, vol.4
, pp. 387-393
-
-
van de Peppel, J.1
Kemmeren, P.2
van Bakel, H.3
Radonjic, M.4
van Leenen, D.5
Holstege, F.C.6
-
5
-
-
20844458965
-
Housekeeping genes in cancer: Normalization of array data
-
Khimani AH, Mhashilkar AM, Mikulskis A, O'Malley M, Liao J, Golenko EE, Mayer P, Chada S, Killian JB, Lott ST: Housekeeping genes in cancer: normalization of array data. Biotechniques 2005, 38:739-745.
-
(2005)
Biotechniques
, vol.38
, pp. 739-745
-
-
Khimani, A.H.1
Mhashilkar, A.M.2
Mikulskis, A.3
O'Malley, M.4
Liao, J.5
Golenko, E.E.6
Mayer, P.7
Chada, S.8
Killian, J.B.9
Lott, S.T.10
-
6
-
-
16844379879
-
Standardization strategy for quantitative PCR in human seminoma and normal testis
-
Neuvians TP, Gashaw I, Sauer CG, von Ostau C, Kliesch S, Bergmann M, Hacker A, Grobholz R: Standardization strategy for quantitative PCR in human seminoma and normal testis. J Biotechnol 2005, 117:163-171.
-
(2005)
J Biotechnol
, vol.117
, pp. 163-171
-
-
Neuvians, T.P.1
Gashaw, I.2
Sauer, C.G.3
von Ostau, C.4
Kliesch, S.5
Bergmann, M.6
Hacker, A.7
Grobholz, R.8
-
7
-
-
23044467076
-
Transcriptional profiling of tissue plasticity: Role of shifts in gene expression and technical limitations
-
Fluck M, Dapp C, Schmutz S, Wit E, Hoppeler H: Transcriptional profiling of tissue plasticity: role of shifts in gene expression and technical limitations. J Appl Physiol 2005, 99:397-413.
-
(2005)
J Appl Physiol
, vol.99
, pp. 397-413
-
-
Fluck, M.1
Dapp, C.2
Schmutz, S.3
Wit, E.4
Hoppeler, H.5
-
8
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP: Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 2002, 30:e15.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
9
-
-
0036178995
-
Control genes and variability: Absence of ubiquitous reference transcripts in diverse mammalian expression studies
-
Lee PD, Sladek R, Greenwood CM, Hudson TJ: Control genes and variability: absence of ubiquitous reference transcripts in diverse mammalian expression studies. Genome Res 2002, 12:292-297.
-
(2002)
Genome Res
, vol.12
, pp. 292-297
-
-
Lee, P.D.1
Sladek, R.2
Greenwood, C.M.3
Hudson, T.J.4
-
10
-
-
0037167899
-
Within the fold: Assessing differential expression measures and reproducibility in microarray assays
-
research0062
-
Yang IV, Chen E, Hasseman JP, Liang W, Frank BC, Wang S, Sharov V, Saeed AI, White J, Li J, Lee NH, Yeatman TJ, Quackenbush J: Within the fold: assessing differential expression measures and reproducibility in microarray assays. Genome Biol 2002, 3:research0062.
-
(2002)
Genome Biol
, vol.3
-
-
Yang, I.V.1
Chen, E.2
Hasseman, J.P.3
Liang, W.4
Frank, B.C.5
Wang, S.6
Sharov, V.7
Saeed, A.I.8
White, J.9
Li, J.10
Lee, N.H.11
Yeatman, T.J.12
Quackenbush, J.13
-
11
-
-
0036545952
-
An assessment of Motorola CodeLink microarray performance for gene expression profiling applications
-
Ramakrishnan R, Dorris D, Lublinsky A, Nguyen A, Domanus M, Prokhorova A, Gieser L, Touma E, Lockner R, Tata M, Zhu X, Patterson M, Shippy R, Sendera TJ, Mazumder A: An assessment of Motorola CodeLink microarray performance for gene expression profiling applications. Nucleic Acids Res 2002, 30:e30.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Ramakrishnan, R.1
Dorris, D.2
Lublinsky, A.3
Nguyen, A.4
Domanus, M.5
Prokhorova, A.6
Gieser, L.7
Touma, E.8
Lockner, R.9
Tata, M.10
Zhu, X.11
Patterson, M.12
Shippy, R.13
Sendera, T.J.14
Mazumder, A.15
-
12
-
-
24144445705
-
Improved statistical tests for differential gene expression by shrinking variance components estimates
-
Cui X, Hwang JT, Qiu J, Blades NJ, Churchill GA: Improved statistical tests for differential gene expression by shrinking variance components estimates. Biostatistics 2005, 6:59-75.
-
(2005)
Biostatistics
, vol.6
, pp. 59-75
-
-
Cui, X.1
Hwang, J.T.2
Qiu, J.3
Blades, N.J.4
Churchill, G.A.5
-
14
-
-
0642336937
-
Oligodeoxyribonucleotide probe accessibility on a three-dimensional DNA microarray surface and the effect of hybridization time on the accuracy of expression ratios
-
Dorris DR, Nguyen A, Gieser L, Lockner R, Lublinsky A, Patterson M, Touma E, Sendera TJ, Elghanian R, Mazumder A: Oligodeoxyribonucleotide probe accessibility on a three-dimensional DNA microarray surface and the effect of hybridization time on the accuracy of expression ratios. BMC Biotechnol 2003, 3:6.
-
(2003)
BMC Biotechnol
, vol.3
, pp. 6
-
-
Dorris, D.R.1
Nguyen, A.2
Gieser, L.3
Lockner, R.4
Lublinsky, A.5
Patterson, M.6
Touma, E.7
Sendera, T.J.8
Elghanian, R.9
Mazumder, A.10
-
15
-
-
33645461833
-
A dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola
-
Wilson AC, Dunbar HE, Davis GK, Hunter WB, Stern DL, Moran NA: A dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola. BMC Genomics 2006, 7:50.
-
(2006)
BMC Genomics
, vol.7
, pp. 50
-
-
Wilson, A.C.1
Dunbar, H.E.2
Davis, G.K.3
Hunter, W.B.4
Stern, D.L.5
Moran, N.A.6
-
16
-
-
0034730124
-
Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
-
Lee ML, Kuo FC, Whitmore GA, Sklar J: Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc Natl Acad Sci U S A 2000, 97:9834-9839.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 9834-9839
-
-
Lee, M.L.1
Kuo, F.C.2
Whitmore, G.A.3
Sklar, J.4
-
17
-
-
0142128826
-
Gene expression analysis reveals chemical-specific profiles
-
Hamadeh HK, Bushel PR, Jayadev S, Martin K, DiSorbo O, Sieber S, Bennett L, Tennant R, Stoll R, Barrett JC, Blanchard K, Paules RS, Afshari CA: Gene expression analysis reveals chemical-specific profiles. Toxicol Sci 2002, 67:219-231.
-
(2002)
Toxicol Sci
, vol.67
, pp. 219-231
-
-
Hamadeh, H.K.1
Bushel, P.R.2
Jayadev, S.3
Martin, K.4
DiSorbo, O.5
Sieber, S.6
Bennett, L.7
Tennant, R.8
Stoll, R.9
Barrett, J.C.10
Blanchard, K.11
Paules, R.S.12
Afshari, C.A.13
-
18
-
-
0036028826
-
Developing toxicologically predictive gene sets using cDNA microarrays and Bayesian classification
-
Thomas RS, Rank DR, Penn SG, Craven MW, Drinkwater NR, Bradfield CA: Developing toxicologically predictive gene sets using cDNA microarrays and Bayesian classification. Methods Enzymol 2002, 357:198-205.
-
(2002)
Methods Enzymol
, vol.357
, pp. 198-205
-
-
Thomas, R.S.1
Rank, D.R.2
Penn, S.G.3
Craven, M.W.4
Drinkwater, N.R.5
Bradfield, C.A.6
-
19
-
-
19544375991
-
Comparison of the expression profiles induced by genotoxic and nongenotoxic carcinogens in rat liver
-
Ellinger-Ziegelbauer H, Stuart B, Wahle B, Bomann W, Ahr HJ: Comparison of the expression profiles induced by genotoxic and nongenotoxic carcinogens in rat liver. Mutat Res 2005, 575:61-84.
-
(2005)
Mutat Res
, vol.575
, pp. 61-84
-
-
Ellinger-Ziegelbauer, H.1
Stuart, B.2
Wahle, B.3
Bomann, W.4
Ahr, H.J.5
-
20
-
-
3042565113
-
The limits of log-ratios
-
Sharov V, Kwong KY, Frank B, Chen E, Hasseman J, Gaspard R, Yu Y, Yang I, Quackenbush J: The limits of log-ratios. BMC Biotechnol 2004, 4:3.
-
(2004)
BMC Biotechnol
, vol.4
, pp. 3
-
-
Sharov, V.1
Kwong, K.Y.2
Frank, B.3
Chen, E.4
Hasseman, J.5
Gaspard, R.6
Yu, Y.7
Yang, I.8
Quackenbush, J.9
-
21
-
-
84872265585
-
-
accession number E-MEXP-525
-
http://www.ebi.ac.uk/arrayexpress/: accession number E-MEXP-525.
-
-
-
-
22
-
-
0242291496
-
MAANOVA: A software package for the analysis of spotted cDNA microarray experiments
-
In Edited by: Pargmigiani G, Garrett E, Irizarry R and Zeger S. New York, Springer
-
Wu H, Kerr K, Cui X, Churchill GA: MAANOVA: A software package for the analysis of spotted cDNA microarray experiments. In The analysis of gene expression data: methods and software Edited by: Pargmigiani G, Garrett E, Irizarry R and Zeger S. New York, Springer; 2002.
-
(2002)
The Analysis of Gene Expression Data: Methods and Software
-
-
Wu, H.1
Kerr, K.2
Cui, X.3
Churchill, G.A.4
-
23
-
-
0034927555
-
Analysis of variance for gene expression microarray data
-
Kerr MK, Martin M, Churchill GA: Analysis of variance for gene expression microarray data. J Comput Biol 2000, 7:819-837.
-
(2000)
J Comput Biol
, vol.7
, pp. 819-837
-
-
Kerr, M.K.1
Martin, M.2
Churchill, G.A.3
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