Spatial population genetic structure and limited dispersal in a rocky mountain alpine stream insect

Molecular Ecology

Volumn 15, Issue 12, 2006, Pages 3553-3566

  Finn, Debra S ^a,b   Theobald, David M ^a   Black IV, William C ^a   Poff, N Leroy ^a  

^a Department of Environmental and Radiological Health Sciences   (United States)

^b OREGON STATE UNIVERSITY   (United States)

Author keywords

Alpine streams; Isolation by distance; mtDNA; Population structure; Simuliidae; SSCP

Indexed keywords

FRESH WATER; MITOCHONDRIAL DNA;

ANIMAL; ANIMAL BEHAVIOR; ARTICLE; CHEMISTRY; CLASSIFICATION; ECOSYSTEM; FLY; GENE FLOW; GENETICS; GEOGRAPHY; HAPLOTYPE; PHYLOGENY; PHYSIOLOGY; POPULATION GENETICS;

ANIMALS; DIPTERA; DNA, MITOCHONDRIAL; ECOSYSTEM; FRESH WATER; GENE FLOW; GENETICS, POPULATION; GEOGRAPHY; HAPLOTYPES; HOMING BEHAVIOR; PHYLOGENY;

HEXAPODA; INSECTA; PROSIMULIUM NEOMACROPYGA; SIMULIIDAE; SIMULIUM NIGRICOXUM;

EID: 33749841611     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2006.03034.x     Document Type: Article

References (88)

1. Adler PH, Currie DC, Wood DM (2004) The Black Flies (Simuliidae) of North America. Cornell University Press, Ithaca, New York.
2. Adler PH, Kim KC, Light RW (1983) Flight patterns of the Simulium vittatum (Diptera: Simuliidae) complex over a stream. Environmental Entomology, 12, 232-236.
3. Allan JD (1975) The distributional ecology and diversity of benthic insects in Cement Creek, Colorado. Ecology, 56, 1040-1053.
4. Avise JC (2000) Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, Massachusetts.
5. Baker AM, Williams SA, Hughes JM (2003) Patterns of spatial genetic structuring in a hydropsychid caddisfly (Cheumatopsyche sp. AV1) from southeastern Australia. Molecular Ecology, 12, 3313-3324.
6. Ballard JWO, Whitlock MC (2004) The incomplete natural history of mitochondria. Molecular Ecology, 13, 729-744.
7. Baron JS, Rueth HM, Wolfe AM et al. (2000) Ecosystem responses to nitrogen deposition in the Colorado Front Range. Ecosystems, 3, 352-368.
8. Black WC, DuTeau NM (1997) RAPD-PCR and SSCP analysis for insect population genetic studies. In: The Molecular Biology of Insect Disease Vectors: A Methods Manual (eds Crampton J, Beard CB, Louis C), pp. 361-373. Chapman & Hall, New York.
9. Bohonak AJ (1999) Dispersal, gene flow, and population structure. Quarterly Review of Biology, 74, 21-45.
10. Bohonak AJ (2002) IBD (isolation by distance): a program for analyses of isolation by distance. Journal of Heredity, 93, 153-154.
11. Bowman WD (2001) Introduction: historical perspectives and significance of alpine ecosystem studies. In: Structure and Function of an Alpine Ecosystem: Niwot Ridge, Colorado (eds Bowman WD, Seastedt TR), pp. 3-12. Oxford University Press, New York.
12. Briers RA, Cariss HM, Gee JHR (2002) Dispersal of adult stoneflies (Plecoptera) from upland streams draining catchments with contrasting land-use. Archiv für Hydrobiologie, 155, 627-644.
13. Briers RA, Cariss HM, Gee JHR (2003) Flight activity of adult stoneflies in relation to weather. Ecological Entomology, 28, 31-40.
14. Briers RA, Gee JHR (2004) Riparian forestry management and adult stream insects. Hydrology and Earth System Sciences, 8, 545-549.
15. Bunn SE, Hughes JM (1997) Dispersal and recruitment in streams: evidence from genetic studies. Journal of the North American Benthological Society, 16, 338-346.
16. Choe JC, Adler PH, Kim KC, Taylor RAJ (1984) Flight patterns of Simulium jenningsi (Diptera: Simuliidae) in central Pennsylvania, USA. Journal of Medical Entomology, 21, 474-476.
17. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1660.
18. Coulon A, Cosson JF, Angibault JM et al. (2004) Landscape connectivity influences gene flow in a roe deer population inhabiting a fragmented landscape: an individual-based approach. Molecular Ecology, 13, 2841-2850.
19. Crandall KA, Templeton AR (1993) Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics, 134, 959-969.
20. DeChaine EG, Martin AP (2004) Historic cycles of fragmentation and expansion in Parnassius smintheus (Papilionidae) inferred using mitochondrial DNA. Evolution, 58, 113-127.
21. Downes JA (1965) Adaptations of insects in the arctic. Annual Review of Entomology, 10, 257-274.
22. Elias SA (1996) The Ice-Age History of National Parks in the Rocky Mountains. Smithsonian Institution Press, Washington, DC.
23. Environmental Systems Research Institute (ESRI) (2005) ARCGIS Version 9 Software. Redlands, California.
24. Finn DS, Poff NL (2005) Variability and convergence in benthic communities along the longitudinal gradients of four physically similar Rocky Mountain streams. Freshwater Biology, 50, 243-261.
25. Flecker AS, Allan JD (1988) Flight direction in some Rocky Mountain mayflies (Ephemeroptera), with observations of parasitism. Aquatic Insects, 10, 33-42.
26. Garnier S, Alibert P, Audiot P, Prieur B, Rasplus JY (2004) Isolation by distance and sharp discontinuities in gene frequencies: implications for the phylogeography of an alpine insect species, Carabus solieri. Molecular Ecology, 13, 1883-1897.
27. Hall TA (1999) BIOEDIT: a user-friendly biological sequence alignment editing and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
28. Hiss RH, Norris DE, Dietrich CH et al. (1994) Molecular taxonomy using single-strand conformation polymorphism (SSCP) analysis of mitochondrial ribosomal DNA genes. Insect Molecular Biology, 3, 171-182.
29. Hubbell SP (2001) The Unified Neutral Theory of Biodiversity and Biogeography. Princeton University Press, Princeton, New Jersey.
30. Hughes JM, Bunn SE, Hurwood DA, Cleary C (1998) Dispersal and recruitment of Tasiagma ciliata (Trichoptera: Tasimiidae) in rainforest streams, south-eastern Australia. Freshwater Biology, 39, 117-127.
31. Hughes JM, Mather PB, Sheldon AL, Allendorf FW (1999) Genetic structure of the stonefly, Yoraperla brevis, populations: the extent of gene flow among adjacent montane streams. Freshwater Biology, 41, 63-72.
32. Hughes JM, Bunn SE, Cleary C, Hurwood DA (2000) A hierarchical analysis of the genetic structure of an aquatic insect Bungona (Baetidae: Ephemeroptera). Heredity, 85, 561-570.
33. Hughes JM, Mather PB, Hillyer MJ, Cleary C, Peckarsky B (2003a) Genetic structure in a montane mayfly Baetis bicaudatus (Ephemeroptera: Baetidae), from the Rocky Mountains, Colorado. Freshwater Biology, 48, 2149-2162.
34. Hughes JM, Hillyer M, Bunn SE (2003b) Small-scale patterns of genetic variation in the mayfly Bungona narilla (Ephemeroptera: Baetidae) in rainforest streams, south-east Queensland. Freshwater Biology, 48, 709-717.
35. Jackson JK, Fisher SG (1986) Secondary production, emergence, and export of aquatic insects of a Sonoran Desert stream. Ecology, 67, 629-638.
36. Keyghobadi N, Roland J, Strobeck C (2005) Genetic differentiation and gene flow among populations of the alpine butterfly, Parnassius smintheus, vary with landscape connectivity. Molecular Ecology, 14, 1897-1909.
37. Knowles LL (2001) Did the Pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshoppers. Molecular Ecology, 10, 691-701.
38. Knowles LL, Maddison WP (2002) Statistical phylogeography. Molecular Ecology, 11, 2623-2635.
39. Kuusela K, Huusko A (1996) Post-emergence migration of stoneflies (Plecoptera) into the nearby forest. Ecological Entomology, 21, 171-177.
40. Liston GE, Sturm M (1998) A snow-transport model for complex terrain. Journal of Glaciology, 44, 498-516.
41. Lowe WH, Likens GE (2005) Moving headwater streams to the head of the class. Bioscience, 55, 196-197.
42. Lunt DH, Zhang D-X, Szymura JM, Hewitt GM (1996) The insect cytochrome oxidase I gene: evolutionary patterns and conserved primers for phylogenetic studies. Insect Molecular Biology, 5, 153-165.
43. MacArthur RH, Wilson EO (1967) The Theory of Island Biogeography. Princeton University Press, Princeton, New Jersey.
44. Macdonald DW, Johnson DDP (2001) Dispersal in theory and practice: consequences for conservation biology. In: Dispersal (eds Clobert J, Danchin E, Dhondt AA, Nichols JD), pp. 358-372. Oxford University Press, Oxford, UK.
45. Macneale KH, Peckarsky BL, Likens GE (2005) Stable isotopes identify dispersal patterns of stonefly populations living along stream corridors. Freshwater Biology, 50, 1117-1130.
46. Michels E, Cottenie K, Neys L, De Gelas K, Coppin P, De Meester L (2001) Geographical and genetic distances among zooplankton populations in a set of interconnected ponds: a plea for using GIS modelling of the effective geographical distance. Molecular Ecology, 10, 1929-1938.
47. Moilanen A, Hanski I (1998) Metapopulation dynamics: effects of habitat quality and landscape structure. Ecology, 79, 2503-2515.
48. Monaghan MT, Spaak P, Robinson CT, Ward JV (2002) Population genetic structure of 3 alpine stream insects: influences of gene flow, demographics, and habitat fragmentation. Journal of the North American Benthological Society, 21, 114-131.
49. Myers MJ, Sperling FAH, Resh VH (2001) Dispersal of two species of Trichoptera from desert springs: conservation implications for isolated vs. connected populations. Journal of Insect Conservation, 5, 207-215.
50. Omernik J (1987) Ecoregions of the conterminous United States. Annals of the Association of American Geographers, 77, 118-125.
51. Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proceedings of the National Academy of Sciences, USA, 86, 2766-2770.
52. Palmer MA, Allan JD, Butman CA (1996) Dispersal as a regional process affecting the local dynamics of marine and stream benthic invertebrates. Trends in Ecology & Evolution, 11, 322-326.
53. Petersen I, Masters Z, Hildrew AG, Ormerod SJ (2004) Dispersal of adult aquatic insects in catchments of differing land use. Journal of Applied Ecology, 41, 934-950.
54. Petersen I, Winterbottom JH, Orton S et al. (1999) Emergence and lateral dispersal of adult Plecoptera and Trichoptera from Broadstone stream, UK. Freshwater Biology, 42, 401-416.
55. Posada D, Crandall KA (2001) Intraspecific gene genealogies: trees grafting into networks. Trends in Ecology & Evolution, 16, 37-45.
56. Posada D, Crandall KA, Templeton AR (2000) GEODIS: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology, 9, 487-488.
57. Roberts DM, Irving-Bell RJ (1996) Effect of weather conditions on the flight activity of Nigerian blackflies (Diperta: Simuliidae). Medical and Veterinary Entomology, 10, 137-144.
58. Roff DA (1990) The evolution of flightlessness in insects. Ecological Monographs, 60, 389-421.
59. Roland J, Keyghobadi N, Fownes S (2000) Alpine Parnassius butterfly dispersal: effects of landscape and population size. Ecology, 81, 1642-1653.
60. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219-1228.
61. Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R (2003) DNASP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496-2497.
62. Schippers P, Verboom J, Knaapen JP, van Apeldoorn RC (1996) Dispersal and habitat connectivity in complex heterogeneous landscapes: an analysis with a GIS-based random walk model. Ecography, 19, 97-106.
63. Schmidt SK, Hughes JM, Bunn SE (1995) Gene flow among conspecific populations of Baetis sp. (Ephemeroptera): adult flight and larval drift. Journal of the North American Benthological Society, 14, 147-157.
64. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN, version 2.000: a software for population genetics data analysis. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Switzerland.
65. Schultheis AS, Weight LA, Hendricks AC (2002) Gene flow, dispersal, and nested clade analysis among populations of the stonefly Peltoperla tarteri in the southern Appalachians. Molecular Ecology, 11, 317-327.
66. Shipp JL, Grace B, Janzen HH (1988) Influence of temperature and water vapour pressure on the flight activity of Simulium arcticum Malloch (Diptera: Simuliidae). International Journal of Biometeorology, 32, 242-246.
67. Slatkin M (1985) Gene flow in natural populations. Annual Review of Ecology and Systematics, 16, 393-430.
68. Slatkin M (1993) Isolation by distance in equilibrium and nonequilibrium populations. Evolution, 47, 264-279.
69. Slatkin M (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics, 139, 457-462.
70. Smith PJ, Collier KJ (2001) Allozyme diversity and population genetic structure of the caddisfly Orthopsyche fimbriata and the mayfly Acanthophlebia cruentata in New Zealand streams. Freshwater Biology, 46, 795-805.
71. Spear SF, Peterson CR, Matocq MD, Storfer A (2005) Landscape genetics of the blotched tiger salamander (Ambystoma tigrinum melanostictum). Molecular Ecology, 14, 2553-2564.
72. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
73. Templeton AR (2004) Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology, 13, 789-809.
74. Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data III. Cladogram estimation. Genetics, 132, 619-633.
75. Thompson BH (1976) Studies on the flight range and dispersal of Simulium damnosum (Diptera: Simuliidae) in the rain-forest of Cameroon. Annals of Tropical Medicine and Parasitology, 70, 343-354.
76. Turchin P (1998) Quantitative Analysis of Movement: Measuring and Modeling Population Redistribution in Animals and Plants. Sinauer Associates, Sunderland, Massachusetts.
77. Ward JV (1994) Ecology of alpine streams. Freshwater Biology, 32, 277-294.
78. Waringer JA (1991) Phenology and the influence of meteorological parameters on the catching success of light-trapping for Trichoptera. Freshwater Biology, 25, 307-319.
79. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
80. Welker JM, Bowman WD, Seastedt TR (2001) Environmental change and future directions in alpine research. In: Structure and Function of an Alpine Ecosystem: Niwot Ridge, Colorado (eds Bowman WD, Seastedt TR), pp. 304-322. Oxford University Press, New York.
81. West DF, Black WC (1998) Breeding structure of three snow pool Aedes mosquito species in northern Colorado. Heredity, 81, 371-380.
82. Wiens JA (1989) Spatial scaling in ecology. Functional Ecology, 3, 385-397.
83. Wiens JA (2001) The landscape context of dispersal. In: Dispersal (eds Clobert J, Danchin E, Dhondt AA, Nichols JD), pp. 96-109. Oxford University Press, Oxford.
84. Wilcock HR, Hildrew AG, Nichols RA (2001) Genetic differentiation of a European caddisfly: past and present gene flow among fragmented larval habitats. Molecular Ecology, 10, 1821-1834.
85. Wilcock HR, Nichols RA, Hildrew AG (2003) Genetic population structure and neighbourhood population size estimates of the caddisfly Plectrocnemia conspersa. Freshwater Biology, 48, 1813-1824.
86. Wishart MJ, Hughes JM (2001) Exploring patterns of population subdivision in the net-winged midge, Elporia barnardi (Diptera: Blephariceridae), in mountain streams of the south-western Cape, South Africa. Freshwater Biology, 46, 479-490.
87. Wishart MJ, Hughes JM (2003) Genetic population structure of the net-winged midge, Elporia barnardi (Diptera: Blephariceridae) in streams of the south-western Cape, South Africa: implications for dispersal. Freshwater Biology, 48, 28-38.
88. Wright S (1940) Breeding structure of populations in relation to speciation. American Naturalist, 74, 232-248.