E-Science and the Semantic Web: A symbiotic relationship

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 4265 LNAI, Issue , 2006, Pages 1-12

  Goble, Carole ^a   Corcho, Oscar ^a   Alper, Pinar ^a   De Roure, David ^b  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

^b UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DATA REDUCTION; DISTRIBUTED COMPUTER SYSTEMS; RESOURCE ALLOCATION; WORLD WIDE WEB;

E-SCIENCE; SCIENTIFIC COMMUNITY; SEMANTIC WEB;

SEMANTICS;

EID: 33750722159     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/11893318_1     Document Type: Conference Paper

References (54)

1. Hey, T. and A.E. Trefethen, Cyberinfrastructure for e-Science. Science, 2005. 308(5723): p. 817-821.
2. Stevens, R., et al. Exploring Williams-Beuren Syndrome Using myGrid. in 12th International Conference on Intelligent Systems in Molecular Biology. 2004. Glasgow, UK: Bioinformatics
3. NAR1, Web Server issue. Nucleic Acids Research 2006. 34.
4. NAR2, Database Issue Nucleic Acids Research 2006. 34.
5. Hey, A.J.G. and A.E. Trefethen, The Data Deluge: An e-Science Perspective, in Grid Computing - Making the Global Infrastructure a Reality, F. Berman, G.C. Fox, and A.J.G. Hey, Editors. 2003, Wiley and Sons. p. 809-824.
6. Szalay, A. and J. Gray, 2020 Computing: Science in an exponential world. Nature, 2006. 440: p. 413-414.
7. Berners-Lee, T., J. Hendler, and O. Lassila, The Semantic Web. Scientific American, 2001. 284(5): p. 34-43.
8. Hendler, J., Science and the Semantic Web. Science 2003. 299: p. 520-521.
9. Baker, C.J.O. and K.-H. Cheung, eds. Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences. 2006, In Press.
10. Schroeder, M. and E. Neumann, Special Issue on Semantic Web in Life Sciences. Journal of Web Semantics, 2006. 4(3).
11. Stevens, R., O. Bodenreider, and Y.A. Lussier. Semantic Webs for Life Sciences Session Introduction, in Pacific Symposium on Biocomputing. 2006.
12. Kazic, T. Putting Semantics into the Semantic Web: How Well Can It Capture Biology? in Pacific Symposium on Biocomputing. 2006.
13. Neumann, E., A Life Science Semantic Web: Are We There Yet? Sci. STKE, 2005 (283).
14. Goble, C. Using the Semantic Web for e-Science: inspiration, incubation, irritation, in 4th International Semantic Web Conference (ISWC2005). 2005. Galway, Ireland: Springer.
15. Greenberg, J., Metadata and the World Wide Web. The encyclopedia of library and information science, 2002.72: p. 244-261.
16. Antoniou, G. and F. van Harmelen, A Semantic Web Primer. 2004: MIT Press
17. Oinn, T., et al., Taverna: A tool for the composition and enactment of bioinformatics workflows. Bioinformatics Journal, 2004. 20(17): p. 3045-3054.
18. Garwood, K., et al. Pedro ontology services; A framework for rapid ontology markup, in 2nd European Semantic Web Conference. 2005. Heraklion, Greece: Springer-Verlag.
19. Frey, J.G., D. De Roure, and L.A. Carr. Publication At Source: Scientific Communication from a Publication Web to a Data Grid, in Euroweb 2002 Conference, The Web and the GRID: from e-science to e-business. 2002. Oxford, UK: BCS.
20. Taylor, K., et al. A Semantic Datagrid for Combinatorial Chemistry, in 6th IEEE/ACM International Workshop on Grid Computing. 2005. Seattle.
21. Hughes, G., et al., The Semantic Smart Laboratory: A system for supporting the chemical e-Scientist. Organic & Biomolecular Chemistry., 2004. 2(22): p. 3284-3293.
22. Bachler, M., et al. Collaborative Tools in the Semantic Grid, in GGF11 - The Eleventh Global Grid Forum. 2004. Honolulu, Hawaii, USA: Global Grid Forum.
23. Zhao, J., et al. Using Semantic Web Technologies for Representing e-Science Provenance. in 3rd International Semantic Web Conference ISWC2004. 2004. Hiroshima, Japan: Springer.
24. Frey, J., et al. CombeChem: A Case Study in Provenance and Annotation using the Semantic Web. in International Provenance and Annotation Workshop (IPAW'06). 2006. Chicago, USA: Springer.
25. Corcho, O., M. Fernández-López, and A. Gómez- Pérez, Methodologies, tools and languages for building ontologies. Where is their meeting point? Data & Knowledge Engineering, 2003. 46(1): p. 41-64.
26. O'Reilly, T. What Is Web 2.0. 2005 [cited July 2006]; Available from: www.oreillynet.com/go/web2.
27. Gruber, T. Ontology of Folksonomies: A Mash-up of Apples and Oranges. 2005 [cited July 2006]; Available from: http://tomgruber.org/writing/ontology- of-folksonomy.htm.
28. Corcho, O., Ontology-based document annotation: trends and open research problems. International Journal of Metadata, Semantics and Ontologies, 2006. 1(1): p. 47-57.
29. Uren, V., et al., Semantic Annotation for Knowledge Management: Requirements and a Survery of the State of the Art. Journal of Web Semantics, 2006. 4(1).
30. Bizer, C. D2R MAP - A DB to RDF Mapping Language, in 12th International World Wide Web Conference (WWW2003). 2003. Budapest, Hungary.
31. Bergman, M.K., The deep Web: surfacing hidden information. The Journal of Electronic Publishing, 2001. 7(1).
32. Stephens, S., et al., Aggregation of bioinformatics data using Semantic Web technology. Journal of Web Semantics, 2006. 4(3).
33. Bourne, P., Will a Biological Database Be Different from a Biological Journal? PLoS Comput Biol, 2005.1(3): p. e34.
34. Bechhofer, S., R. Stevens, and P. Lord. Ontology Driven Dynamic Linking of Biology Resources. in Pacific Symposium on Biocomputing. 2005. Hawaii.
35. Cheung, K.H., et al., YeastHub: a semantic web use case for integrating data in the life sciences domain. Bioinformatics 2005. 21(1: i85-i96).
36. Taylor, K.R., et al., Bringing Chemical Data onto the Semantic Web. J. Chem. Inf. Model., 2006. 46: p. 939-952
37. Myers, J.D., et al. A Collaborative Informatics Infrastructure for Multi-scale Science, in Second International Workshop on Challenges of Large Applications in Distributed Environments. 2004. Honolulu, Hawaii.
38. Newscientist.com news service and Translator lets computers "understand" experiments. 2006 [cited July 2006]; Available from: http://www.newscientist.com/article/dn9288-translator-lets-computers-understand- experiments-.html.
39. Wang, X., R. Gorlitsky, and J.S. Almeida, From XML to RDF: How Semantic Web Technologies Will Change the Design of 'Omic' Standards. Nature Biotechnology, 2005. 23(9): p. 1099-103.
40. Blake, J., Bio-ontologies - fast and furious. Nature Biotechnology 2004. 22: p. 773-774.
41. Cheung, K.-H., et al., A semantic web approach to biological pathway data reasoning and integration. Journal of Web Semantics, 2006. 4(3).
42. Lord, P., et al. Feta: A light-weight architecture for user oriented semantic service discovery, in 2nd European Semantic Web Conference. 2005. Heraklion, Greece: Springer-Verlag.
43. Wroe, C.J., et al. Methodology To Migrate The Gene Ontology To A Description Logic Environment Using DAML+OIL. in 8th Pacific Symposium on Biocomputing (PSB). 2003. Hawaii.
44. Stevens, R., et al., Managing OWL's Limitations in Modelling Biomedical Knowledge. Intl Journal of Human Computer Systems, Accepted for publication.
45. Zhang, S., O. Bodenreider, and C. Golbreich. Experience in Reasoning with the Foundational Model of Anatomy in OWL DL. in Pacific Symposium on Biocomputing. 2006.
46. Neumann, E.K. and D. Quan. Biodash: A Semantic Web Dashboard for Drug Development, in Pacific Symposium on Biocomputing. 2006.
47. Gates, W. Opening Keynote, in SuperComputing 2005 (SC05). 2005. Seattle, Washington.
48. Goble, C., R. Stevens, and S. Bechhofer, The Semantic Web and Knowledge Grids. Drug Discovery Today: Technologies, 2005. 2(3): p. 193-302.
49. Wolstencroft, K., et al. A little semantics goes a long way in Biology, in 4th International Semantic Web Conference (JSWC2005). 2005. Galway, Ireland.
50. W3C, Workshop on Semantic Web for Life Sciences. 2004: Cambridge, Massachusetts USA.
51. Gao, Y., et al., SWAN: A distributed knowledge infrastructure for Alzheimer disease research. Journal of Web Semantics, 2006. 4(3).
52. Goble, C.A. and D. De Roure. The Semantic Grid: Building Bridges and Busting Myths. in 16th European Conference in Artificial Intelligence (ECAI 2004). 2004. Valencia, Spain.
53. De Roure, D., N.R. Jennings, and N.R. Shadbolt, The Semantic Grid: Past, Present, and Future. Proceedings of the IEEE, 2005.93(3): p. 669-681.
54. Goble, C.A., et al., Enhancing Services and Applications with Knowledge and Semantics, in The Grid 2: Blueprint for a New Computing Infrastructure, I. Foster and C. Kesselman, Editors. 2004, Morgan-Kaufmann. p. 431-458.