-
1
-
-
13444259868
-
The molecular biology database collection: 2005 update
-
Galperin M. The molecular biology database collection: 2005 update. Nucleic Acids Res. 33 D5-D24 (2005) 5-24
-
(2005)
Nucleic Acids Res.
, vol.33
, Issue.D5-D24
, pp. 5-24
-
-
Galperin, M.1
-
2
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
Kanehisa M., and Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28 1 (2000) 27-30
-
(2000)
Nucleic Acids Res.
, vol.28
, Issue.1
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
3
-
-
13444259844
-
Reactome: a knowledgebase of biological pathways
-
Joshi-Tope G., Gillespie M., Vastrik I., D'Eustachio P., Schmidt E., de Bono B., Jassal B., Gopinath G.R., Wu G.R., Matthews L., et al. Reactome: a knowledgebase of biological pathways. Nucleic Acids Res. 33 Database issue (2005) D428-D432
-
(2005)
Nucleic Acids Res.
, vol.33
, Issue.Database issue
-
-
Joshi-Tope, G.1
Gillespie, M.2
Vastrik, I.3
D'Eustachio, P.4
Schmidt, E.5
de Bono, B.6
Jassal, B.7
Gopinath, G.R.8
Wu, G.R.9
Matthews, L.10
-
4
-
-
0037245913
-
BIND: the Biomolecular Interaction Network Database
-
Bader G.D., Betel D., and Hogue C.W.V. BIND: the Biomolecular Interaction Network Database. Nucleic Acids Res. 31 1 (2003) 248-250
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.1
, pp. 248-250
-
-
Bader, G.D.1
Betel, D.2
Hogue, C.W.V.3
-
5
-
-
21044455304
-
Systems biology may work when we learn to understand the parts in terms of the whole
-
Cornish-Bowden A., and Cardenas M. Systems biology may work when we learn to understand the parts in terms of the whole. Biochem. Soc. Trans. 33 Part 3 (2005) 516-519
-
(2005)
Biochem. Soc. Trans.
, vol.33
, Issue.PART 3
, pp. 516-519
-
-
Cornish-Bowden, A.1
Cardenas, M.2
-
6
-
-
19344372443
-
Systems biology, integrative biology, predictive biology
-
Liu E. Systems biology, integrative biology, predictive biology. Cell 121 (2005) 505-506
-
(2005)
Cell
, vol.121
, pp. 505-506
-
-
Liu, E.1
-
7
-
-
18044365052
-
Systems biology-an interdisciplinary approach
-
Friboulet A., and Thomas D. Systems biology-an interdisciplinary approach. Biosens. Bioelectron. 20 12 (2005) 2404-2407
-
(2005)
Biosens. Bioelectron.
, vol.20
, Issue.12
, pp. 2404-2407
-
-
Friboulet, A.1
Thomas, D.2
-
8
-
-
18144399225
-
Systems biology in drug safety and metabolism: integration of microarray, real-time PCR and enzyme approaches
-
Yengi L.G. Systems biology in drug safety and metabolism: integration of microarray, real-time PCR and enzyme approaches. Pharmacogenomics 6 2 (2005) 185-192
-
(2005)
Pharmacogenomics
, vol.6
, Issue.2
, pp. 185-192
-
-
Yengi, L.G.1
-
9
-
-
0035248531
-
Prostate cancer genomics
-
Li P., and Nelson P. Prostate cancer genomics. Curr. Urol. Rep. 2 1 (2001) 70-78
-
(2001)
Curr. Urol. Rep.
, vol.2
, Issue.1
, pp. 70-78
-
-
Li, P.1
Nelson, P.2
-
10
-
-
0037458031
-
From the cover: identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics
-
Mootha V., Lepage P., Miller K., Bunkenborg J., Reich M., Hjerrild M., Delmonte T., Villeneuve A., Sladek R., Xu F., et al. From the cover: identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics. PNAS 100 2 (2003) 605-610
-
(2003)
PNAS
, vol.100
, Issue.2
, pp. 605-610
-
-
Mootha, V.1
Lepage, P.2
Miller, K.3
Bunkenborg, J.4
Reich, M.5
Hjerrild, M.6
Delmonte, T.7
Villeneuve, A.8
Sladek, R.9
Xu, F.10
-
11
-
-
0033168258
-
Integrated pathway-genome databases and their role in drug discovery
-
Karp P.D., Krummenacker M., Paley S., and Wagg J. Integrated pathway-genome databases and their role in drug discovery. Trends Biotechnol. 17 7 (1999) 275-281
-
(1999)
Trends Biotechnol.
, vol.17
, Issue.7
, pp. 275-281
-
-
Karp, P.D.1
Krummenacker, M.2
Paley, S.3
Wagg, J.4
-
12
-
-
3042734655
-
Computational knowledge integration in biopharmaceutical research
-
Ficenec D., Osborne M., Pradines J., Richards D., Felciano R., Cho R., Chen R., Liefeld T., Owen J., Ruttenberg A., et al. Computational knowledge integration in biopharmaceutical research. Brief. Bioinform. 4 3 (2003) 260-278
-
(2003)
Brief. Bioinform.
, vol.4
, Issue.3
, pp. 260-278
-
-
Ficenec, D.1
Osborne, M.2
Pradines, J.3
Richards, D.4
Felciano, R.5
Cho, R.6
Chen, R.7
Liefeld, T.8
Owen, J.9
Ruttenberg, A.10
-
13
-
-
0035106485
-
XML, bioinformatics and data integration
-
Achard F., Vaysseix G., and Barillot E. XML, bioinformatics and data integration. Bioinformatics 17 2 (2001) 115-125
-
(2001)
Bioinformatics
, vol.17
, Issue.2
, pp. 115-125
-
-
Achard, F.1
Vaysseix, G.2
Barillot, E.3
-
14
-
-
0037342537
-
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
-
Hucka M., Finney A., Sauro H., Bolouri H., Doyle J., Kitano H., Arkin A., Bornstein B., Bray D., Cornish-Bowden A., et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 19 4 (2003) 524-531
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.3
Bolouri, H.4
Doyle, J.5
Kitano, H.6
Arkin, A.7
Bornstein, B.8
Bray, D.9
Cornish-Bowden, A.10
-
15
-
-
2442595958
-
CellML: its future, present and past
-
Lloyd C., Halstead M., and Nielsen P. CellML: its future, present and past. Prog. Biophys. Mol. Biol. 85 2-3 (2004) 433-450
-
(2004)
Prog. Biophys. Mol. Biol.
, vol.85
, Issue.2-3
, pp. 433-450
-
-
Lloyd, C.1
Halstead, M.2
Nielsen, P.3
-
16
-
-
0742323374
-
The HUPO PSI's molecular interaction format-a community standard for the representation of protein interaction data
-
Hermjakob H., Montecchi-Palazzi L., Bader G., Wojcik J., Salwinski L., Ceol A., Moore S., Orchard S., Sarkans U., Mering C.V., et al. The HUPO PSI's molecular interaction format-a community standard for the representation of protein interaction data. Nat. Biotechnol. 22 (2004) 177-183
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 177-183
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Bader, G.3
Wojcik, J.4
Salwinski, L.5
Ceol, A.6
Moore, S.7
Orchard, S.8
Sarkans, U.9
Mering, C.V.10
-
17
-
-
13444272070
-
The Biomolecular Interaction Network Database and related tools 2005 update
-
Alfarano C., Andrade C.E., Anthony K., Bahroos N., Bajec M., Bantoft K., Betel D., Bobechko B., Boutilier K., Burgess E., et al. The Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Res. 33 suppl_1 (2005) D418-D424
-
(2005)
Nucleic Acids Res.
, vol.33
, Issue.1 suppl
-
-
Alfarano, C.1
Andrade, C.E.2
Anthony, K.3
Bahroos, N.4
Bajec, M.5
Bantoft, K.6
Betel, D.7
Bobechko, B.8
Boutilier, K.9
Burgess, E.10
-
18
-
-
33748416310
-
Development of genomic object net builder for supporting XML design for visualization
-
Tanaka T., and Kitakaze H. Development of genomic object net builder for supporting XML design for visualization. Genome Inform. 13 (2002) 455-456
-
(2002)
Genome Inform.
, vol.13
, pp. 455-456
-
-
Tanaka, T.1
Kitakaze, H.2
-
19
-
-
33748435913
-
XML pathway file conversion between genome object net and SBML
-
Nakano M., and Kitakaze H. XML pathway file conversion between genome object net and SBML. Genome Inform. 13 (2002) 457-458
-
(2002)
Genome Inform.
, vol.13
, pp. 457-458
-
-
Nakano, M.1
Kitakaze, H.2
-
20
-
-
0023663060
-
A genetic linkage map of the human genome
-
Donis-Keller H., Green P., Helms C., Cartinhour S., Weiffenbach B., Stephens K., Keith t., Bowden d., Smith D., Lander E., et al. A genetic linkage map of the human genome. Cell 51 (1987) 319-337
-
(1987)
Cell
, vol.51
, pp. 319-337
-
-
Donis-Keller, H.1
Green, P.2
Helms, C.3
Cartinhour, S.4
Weiffenbach, B.5
Stephens, K.6
Keith, t.7
Bowden, d.8
Smith, D.9
Lander, E.10
-
21
-
-
14844326483
-
Computational prediction of human metabolic pathways from the complete human genome
-
Romero P., Wagg J., Green M., Kaiser D., Krummenacker M., and Karp P. Computational prediction of human metabolic pathways from the complete human genome. Genome Biol. 6 1 (2004) R2
-
(2004)
Genome Biol.
, vol.6
, Issue.1
-
-
Romero, P.1
Wagg, J.2
Green, M.3
Kaiser, D.4
Krummenacker, M.5
Karp, P.6
-
22
-
-
21544461263
-
PAX of mind for pathway researchers
-
Luciano J.S. PAX of mind for pathway researchers. Science 10 13 (2005) 937-942
-
(2005)
Science
, vol.10
, Issue.13
, pp. 937-942
-
-
Luciano, J.S.1
-
23
-
-
27144450537
-
Systems biology. Less is more in modeling large genetic networks
-
Bornholdt S. Systems biology. Less is more in modeling large genetic networks. Science 310 5747 (2005) 449-451
-
(2005)
Science
, vol.310
, Issue.5747
, pp. 449-451
-
-
Bornholdt, S.1
-
24
-
-
9144236198
-
Human protein reference database as a discovery resource for proteomics
-
Peri S., Navarro J., Kristiansen T., Amanchy R., Surendranath V., Muthusamy B., Gandhi T., Chandrika K., Deshpande N., Suresh S., et al. Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res. 32 (2004) D497-D501
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Peri, S.1
Navarro, J.2
Kristiansen, T.3
Amanchy, R.4
Surendranath, V.5
Muthusamy, B.6
Gandhi, T.7
Chandrika, K.8
Deshpande, N.9
Suresh, S.10
-
25
-
-
0037024612
-
Science's signal transduction knowledge environment: the connections maps database
-
Gough N.R. Science's signal transduction knowledge environment: the connections maps database. Ann. N.Y. Acad. Sci. 971 (2002) 585-587
-
(2002)
Ann. N.Y. Acad. Sci.
, vol.971
, pp. 585-587
-
-
Gough, N.R.1
-
26
-
-
9144248312
-
IntAct-an open source molecular interaction database
-
Hermjakob H., Montecchi-Palazzi L., Lewington C., Mudali S., Kerrien S., Orchard S., Vingron M., Roechert B., Roepstorff P., Valencia A., et al. IntAct-an open source molecular interaction database. Nucleic Acids Res. 32 (2004) D452-D455
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Lewington, C.3
Mudali, S.4
Kerrien, S.5
Orchard, S.6
Vingron, M.7
Roechert, B.8
Roepstorff, P.9
Valencia, A.10
-
27
-
-
0035267939
-
Creating semantic web contents with Protege-2000
-
Noy N.F., Sintek M., Decker S., Crubezy M., Fergerson R.W., and Musen M.A. Creating semantic web contents with Protege-2000. IEEE Intelligent Syst. 16 2 (2001) 60-71
-
(2001)
IEEE Intelligent Syst.
, vol.16
, Issue.2
, pp. 60-71
-
-
Noy, N.F.1
Sintek, M.2
Decker, S.3
Crubezy, M.4
Fergerson, R.W.5
Musen, M.A.6
-
28
-
-
33748422640
-
-
H. Knublauch, R.W. Fergerson, N.F. Noy, M.A. Musen. The Protege OWL Plugin: An Open Development Environment for Semantic Web Applications. Third International Semantic Web Conference - ISWC 2004, Hiroshima, Japan (2004).
-
-
-
-
29
-
-
84867759223
-
-
V. Haarslev, R. Ralf Moller. RACER system description, in: Proceedings of the International Joint Conference on Automated Reasoning (IJCAR-01), vol. 2083 of Lecture Notes in Artificial Intelligence, Springer-Verlag, 2001, pp. 701-705.
-
-
-
-
30
-
-
33748419767
-
-
B. Hollunder, F. Baader. Qualifying number restrictions in concept languages, in: Proceedings of the Second International Conference on the Principles of Knowledge Representation and Reasoning (KR-91), Boston, MA, USA, 1991, pp. 335-346.
-
-
-
-
31
-
-
33748432682
-
-
S. Tobies. Complexity Results and Practical Algorithms for Logics in Knowledge Representation. PhD Thesis, RWTH Aachen, 2001. electronically available at http://www.bth.rwth-aachen.de/ediss/ediss.html.
-
-
-
-
32
-
-
33748438081
-
-
O.W.L. Pellet. Reasoner. http://www.mindswap.org/2003/pellet/index.shtml.
-
-
-
-
33
-
-
33748428305
-
-
I. Horrocks, L. Li, D. Turi, S. Bechhofer. The instance store: DL reasoning with large numbers of individuals, in: Proceedings of the 2004 Description Logic Workshop (DL 2004), 2004.
-
-
-
-
34
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon P., Markiel A., Ozier O., Baliga N.S., Wang J.T., Ramage D., Amin N., Schwikowski B., and Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13 11 (2003) 2498-2504
-
(2003)
Genome Res.
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
|