Correlating gene expression to physiological parameters and environmental conditions during cold acclimation of Pinus sylvestris, identification of molecular markers using cDNA microarrays

Tree Physiology

Volumn 26, Issue 10, 2006, Pages 1297-1313

  Joosen, Ronny V L ^a   Lammers, Michiel ^a   Balk, Peter A ^a   Brønnum, Peter ^b   Konings, Maurice C J M ^a   Perks, Mike ^c   Stattin, Eva ^d   Van Wordragen, Monique F ^a   Van Der Geest, A H M ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b DANISH INSTITUTE OF AGRICULTURAL SCIENCES   (Denmark)

^c FOREST RESEARCH   (United Kingdom)

^d DALARNA UNIVERSITY   (Sweden)

Author keywords

Apical buds; Climate room; Field; Freezing tolerance; Gene expression; mRNA level; Root electrolyte leakage; Scots pine; Seedlings; Shoot electrolyte leakage; Transcript abundance

Indexed keywords

ABUNDANCE; ANALYTICAL METHOD; BIOMARKER; CONIFEROUS TREE; DNA; ENVIRONMENTAL CONDITIONS; FIELD METHOD; FREEZE TOLERANCE; GENE EXPRESSION; HIGH TEMPERATURE; MOLECULAR ANALYSIS; PHOTOPERIOD; PHYSIOLOGICAL RESPONSE; ROOT SYSTEM; SEEDLING; SHOOT;

PINUS SYLVESTRIS;

EID: 33750696676     PISSN: 0829318X     EISSN: None     Source Type: Journal    
DOI: 10.1093/treephys/26.10.1297     Document Type: Article

References (43)

1. Allagulova, C.R., F.R. Gimalov, F.M. Shakirova and V.A. Vakhitov. 2003. The plant dehydrins: structure and putative functions. Biochemistry (Moscow) 68:945-951.
2. Beck, E.H., R. Heim and J. Hansen. 2004. Plant resistance to cold stress: mechanisms and environmental signals triggering frost hardening and dehardening. J. Biosci. 29:449-459.
3. Brønnum, P. 2005. Assessment of seedling storability of Quercus robur and Pinus sylvestris. Scand. J. For. Res. 20:26-35.
4. Chang, S., J. Puryear and J. Cairney. 1993. A simple and efficient method for isolating RNA from pine trees. Plant Mol. Biol. Rep. 11:113-116.
5. Chapman, S., P. Schenk, K. Kazan and J. Manners. 2002. Using biplots to interpret gene expression patterns in plants. Bioinformatics 18:202-204.
6. Chinnusamy, V., K. Schumaker and J.K. Zhu. 2004. Molecular genetic perspectives on cross-talk and specificity in abiotic stress signalling in plants. J. Exp. Bot. 55:225-236.
7. Close, T.J. 1997. Dehydrins: a commonality in the response of plants to dehydration and low temperature. Physiol. Plant. 100:291-296.
8. Cobbett, C. and P. Goldsbrough. 2002. Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis. Annu. Rev. Plant Biol. 53:159-182.
9. Fowler, S. and M.F. Thomashow. 2002. Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell 14:1675-1690.
10. Galau, G.A., D.W. Hughes and L. Dure. 1986. Abscisic-acid induction of cloned cotton late embryogenesis-abundant (LEA) messenger-RNAs. Plant Mol. Biol. 7:155-170.
11. Garber, K. 2004. Gene expression tests foretell breast cancer's future. Science 303:1754-1755.
12. Gianni, L., M. Zambetti, K. Clark et al. 2005. Gene expression profiles in paraffin-embedded core biopsy tissue predict response to chemotherapy in women with locally advanced breast cancer. J. Clin. Oncol. 23:7265-7277.
13. Gilmour, S.J., A.M. Sebolt, M.P. Salazar, J.D. Everard and M.F. Thomashow. 2000. Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation. Plant Physiol. 124:1854-1865.
14. Goyal, K., L.J. Walton and A. Tunnacliffe. 2005. LEA proteins prevent protein aggregation due to water stress. Biochem. J. 388:151-157.
15. Griffith, M. and M.W. Yaish. 2004. Antifreeze proteins in overwintering plants: a tale of two activities. Trends Plant Sci. 9:399-405.
16. Horvath, D.P., J.V. Anderson, W.S. Chao and M.E. Foley. 2003. Knowing when to grow: signals regulating bud dormancy. Trends Plant Sci. 8:534-540.
17. Hurme, P., T. Repo, O. Savolainen and T. Paakkonen. 1997. Climatic adaptation of bud set and frost hardiness in Scots pine (Pinus sylvestris). Can. J. For. Res. 27:716-723.
18. Jaglo-Ottosen, K.R., S.J. Gilmour, D.G. Zarka, O. Schabenberger and M.F. Thomashow. 1998. Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance. Science 280:104-106.
19. Levitt, J. 1980. Responses of plants to environmental stresses. Vol. 1. 2nd Edn. Academic Press, New York, 256 p.
20. Li, D., H. Zhu, K. Liu, X. Liu, G. Leggewie, M. Udvardi and D. Wang. 2002. Purple acid phosphatases of Arabidopsis thaliana. Comparative analysis and differential regulation by phosphate deprivation. J. Biol. Chem. 277:27,772-27,781.
21. Li, C., O. Junttila and E.T. Palva. 2004. Environmental regulation and physiological basis of freezing tolerance in woody plants. Acta Physiol. Plant. 26:213-222.
22. Liao, H., F. Wong, T. Phang, M. Cheung, W. Li, G. Shao, X. Yan and H. Lam. 2003. GmPAP3, a novel purple acid phosphatase-like gene in soybean induced by NaCl stress but not phosphorus deficiency. Gene 318:103-111.
23. Liu, J.J. and A.K. Ekramoddoullah. 2004. Characterization, expression and evolution of two novel subfamilies of Pinus monticola cDNAs encoding pathogenesis-related (PR)-10 proteins. Tree Physiol. 24:1377-1385.
24. McKay, H.M. 1992. Electrolyte leakage from fine roots of conifer seedlings: a rapid index of plant vitality following cold-storage. Can. J. For. Res. 22:1371-1377.
25. Padmanabhan, V., D.M. Dias and R.J. Newton. 1997. Expression analysis of a gene family in loblolly pine (Pinus taeda L.) induced by water deficit stress. Plant Mol. Biol. 35:801-807.
26. Pearce, R.S. 1999. Molecular analysis of acclimation to cold. Plant Growth Regul. 29:47-76.
27. Preisig-Muller, R., A. Schwekendiek, I. Brehm, H.J. Reif and H. Kindl. 1999. Characterization of a pine multigene family containing elicitor-responsive stilbene synthase genes. Plant Mol. Biol. 39:221-229.
28. Repo, T., G. Zhang, A. Ryyppo, R. Rikala and M. Vuorinen. 2000. The relation between growth cessation and frost hardening in Scots pines of different origins. Trees 14:456-464.
29. Seki, M., J. Ishida, M. Narusaka et al. 2002. Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray. Funct. Integr. Genomics 2:282-291.
30. Seki, M., A. Kamei, K. Yamaguchi-Shinozaki and K. Shinozaki. 2003. Molecular responses to drought, salinity and frost: common and different paths for plant protection. Curr. Opin. Biotechnol. 14:194-199.
31. Shinozaki, K., K. Yamaguchi-Shinozaki and M. Seki. 2003. Regulatory network of gene expression in the drought and cold stress responses. Curr. Opin. Plant Biol. 6:410-417.
32. Soeda, Y., M.C.J.M. Konings, O. Vorst et al. 2005. Gene expression programs during Brassica oleracea seed maturation, osmopriming and germination are indicators of progression of the germination process and the stress tolerance level. Plant Physiol. 137:354-368.
33. Stitt, M. and V. Hurry. 2002. A plant for all seasons: alterations in photosynthetic carbon metabolism during cold acclimation in Arabidopsis. Curr. Opin. Plant Biol. 5:199-206.
34. Taulavuori, K., E. Taulavuori, A. Niinimaa and K. Laine. 1996. Frost resistance and pH of cell effusate in needles of artificially deacclimated Scots pine (Pinus sylvestris L.). Physiol. Plant. 96:111-117.
35. Thomashow, M.F. 1999. Plant cold acclimation: freezing tolerance genes and regulatory mechanisms. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50:571-599.
36. Thomashow, M.F. 2001. So what's new in the field of plant cold acclimation? Lots! Plant Physiol. 125:89-93.
37. Thomma, B.P., B.P. Cammue and K. Thevissen. 2002. Plant defensins. Planta 216:193-202.
38. van Amerongen, A. and M. Koets. 2005. Simple and rapid bacterial protein and DNA diagnostic methods based on signal generation with colloidal carbon particles. In Rapid Methods for Biological and Chemical Contaminants in Food and Feed. Eds. A. van Amerongen, D. Barug and M. Lauwaars. Wageningen Academic Publishers, Wageningen, The Netherlands, pp 105-126.
39. Viswanathan, C. and J.K. Zhu. 2002. Molecular genetic analysis of cold-regulated gene transcription. Philos. Trans. R. Soc. Lond. B Biol. Sci. 357:877-886.
40. Watkinson, J.I., A.A. Sioson, C. Vasquez-Robinet et al. 2003. Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine. Plant Physiol. 133:1702-1716.
41. Wise, M.J. and A. Tunnacliffe. 2004. POPP the question: what do LEA proteins do? Trends Plant Sci. 9:13-17.
42. Zhang, G., A. Ryyppo, E. Vapaavuori and T. Repo. 2003. Quantification of additive response and stationarity of frost hardiness by photoperiod and temperature in Scots pine. Can. J. For. Res. 33:1772-1784.
43. Zhu, J.K. 2001. Cell signaling under salt, water and cold stresses. Curr. Opin. Plant Biol. 4:401-406.